HEADER SIGNALING PROTEIN 08-APR-19 6JT1 TITLE STRUCTURE OF HUMAN SOLUBLE GUANYLATE CYCLASE IN THE HEME OXIDISED TITLE 2 STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GUANYLATE CYCLASE SOLUBLE SUBUNIT ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GCS-ALPHA-1,GUANYLATE CYCLASE SOLUBLE SUBUNIT ALPHA-3,GCS- COMPND 5 ALPHA-3,SOLUBLE GUANYLATE CYCLASE LARGE SUBUNIT; COMPND 6 EC: 4.6.1.2; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: GENBANK: AAH28384.1; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-1; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: GCS-BETA-1,GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-3,GCS- COMPND 13 BETA-3,SOLUBLE GUANYLATE CYCLASE SMALL SUBUNIT; COMPND 14 EC: 4.6.1.2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GUCY1A1, GUC1A3, GUCSA3, GUCY1A3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: GUCY1B1, GUC1B3, GUCSB3, GUCY1B3; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS SOLUBLE GUANYLATE CYCLASE, SIGNALING PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR L.CHEN,Y.KANG,R.LIU,J.-X.WU REVDAT 5 27-MAR-24 6JT1 1 REMARK REVDAT 4 20-NOV-19 6JT1 1 JRNL REVDAT 3 06-NOV-19 6JT1 1 CRYST1 REVDAT 2 09-OCT-19 6JT1 1 JRNL REVDAT 1 28-AUG-19 6JT1 0 JRNL AUTH Y.KANG,R.LIU,J.X.WU,L.CHEN JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF HUMAN SOLUBLE JRNL TITL 2 GUANYLATE CYCLASE. JRNL REF NATURE V. 574 206 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 31514202 JRNL DOI 10.1038/S41586-019-1584-6 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 379909 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6JT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011712. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN SOLUBLE GUANYLATE CYCLASE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 2 REMARK 465 CYS A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 LYS A 7 REMARK 465 ASP A 8 REMARK 465 LEU A 9 REMARK 465 LYS A 10 REMARK 465 ILE A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 CYS A 15 REMARK 465 PRO A 16 REMARK 465 PHE A 17 REMARK 465 SER A 18 REMARK 465 LEU A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 GLN A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ASN A 27 REMARK 465 GLU A 28 REMARK 465 SER A 29 REMARK 465 SER A 30 REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 465 ALA A 33 REMARK 465 ALA A 34 REMARK 465 GLY A 35 REMARK 465 SER A 36 REMARK 465 SER A 37 REMARK 465 GLU A 38 REMARK 465 SER A 39 REMARK 465 CYS A 40 REMARK 465 LYS A 41 REMARK 465 ALA A 42 REMARK 465 THR A 43 REMARK 465 MET A 44 REMARK 465 PRO A 45 REMARK 465 ILE A 46 REMARK 465 CYS A 47 REMARK 465 GLN A 48 REMARK 465 ASP A 49 REMARK 465 ILE A 50 REMARK 465 PRO A 51 REMARK 465 GLU A 52 REMARK 465 LYS A 53 REMARK 465 ASN A 54 REMARK 465 ILE A 55 REMARK 465 GLN A 56 REMARK 465 GLU A 57 REMARK 465 SER A 58 REMARK 465 LEU A 59 REMARK 465 PRO A 60 REMARK 465 GLN A 61 REMARK 465 ARG A 62 REMARK 465 LYS A 63 REMARK 465 THR A 64 REMARK 465 SER A 65 REMARK 465 ARG A 66 REMARK 465 SER A 67 REMARK 465 ARG A 68 REMARK 465 ILE A 102 REMARK 465 LYS A 103 REMARK 465 GLU A 104 REMARK 465 SER A 105 REMARK 465 ARG A 106 REMARK 465 LYS A 107 REMARK 465 SER A 108 REMARK 465 LEU A 109 REMARK 465 GLU A 110 REMARK 465 ARG A 111 REMARK 465 GLU A 112 REMARK 465 ASP A 113 REMARK 465 HIS A 175 REMARK 465 CYS A 176 REMARK 465 GLN A 177 REMARK 465 GLU A 178 REMARK 465 ALA A 179 REMARK 465 GLY A 180 REMARK 465 LYS A 181 REMARK 465 ARG A 182 REMARK 465 GLY A 183 REMARK 465 ARG A 184 REMARK 465 LEU A 185 REMARK 465 GLU A 186 REMARK 465 ASP A 187 REMARK 465 MET A 259 REMARK 465 LYS A 260 REMARK 465 SER A 261 REMARK 465 THR A 262 REMARK 465 LYS A 263 REMARK 465 PRO A 264 REMARK 465 SER A 265 REMARK 465 LEU A 266 REMARK 465 SER A 267 REMARK 465 PRO A 268 REMARK 465 SER A 269 REMARK 465 LYS A 270 REMARK 465 PRO A 271 REMARK 465 GLN A 272 REMARK 465 SER A 273 REMARK 465 PHE A 314 REMARK 465 GLN A 315 REMARK 465 GLY A 316 REMARK 465 ASP A 354 REMARK 465 ASN A 355 REMARK 465 SER A 356 REMARK 465 VAL A 357 REMARK 465 LYS A 358 REMARK 465 LYS A 359 REMARK 465 SER A 360 REMARK 465 GLN A 661 REMARK 465 GLN A 662 REMARK 465 GLY A 663 REMARK 465 THR A 664 REMARK 465 ASN A 665 REMARK 465 SER A 666 REMARK 465 LYS A 667 REMARK 465 PRO A 668 REMARK 465 CYS A 669 REMARK 465 PHE A 670 REMARK 465 GLN A 671 REMARK 465 LYS A 672 REMARK 465 LYS A 673 REMARK 465 ASP A 674 REMARK 465 VAL A 675 REMARK 465 GLU A 676 REMARK 465 ASP A 677 REMARK 465 GLY A 678 REMARK 465 ASN A 679 REMARK 465 ALA A 680 REMARK 465 ASN A 681 REMARK 465 PHE A 682 REMARK 465 LEU A 683 REMARK 465 GLY A 684 REMARK 465 LYS A 685 REMARK 465 ALA A 686 REMARK 465 SER A 687 REMARK 465 GLY A 688 REMARK 465 ILE A 689 REMARK 465 ASP A 690 REMARK 465 GLU B 188 REMARK 465 GLU B 189 REMARK 465 ASP B 190 REMARK 465 PHE B 191 REMARK 465 TYR B 192 REMARK 465 GLU B 193 REMARK 465 ASP B 194 REMARK 465 LEU B 195 REMARK 465 ASP B 196 REMARK 465 ARG B 197 REMARK 465 PHE B 198 REMARK 465 GLU B 199 REMARK 465 GLU B 200 REMARK 465 ASN B 201 REMARK 465 GLY B 202 REMARK 465 THR B 203 REMARK 465 VAL B 287 REMARK 465 GLU B 288 REMARK 465 LYS B 289 REMARK 465 LEU B 290 REMARK 465 GLU B 291 REMARK 465 CYS B 292 REMARK 465 GLU B 293 REMARK 465 ASP B 294 REMARK 465 GLU B 295 REMARK 465 LEU B 296 REMARK 465 THR B 297 REMARK 465 GLY B 298 REMARK 465 THR B 299 REMARK 465 GLU B 300 REMARK 465 ILE B 301 REMARK 465 ASN B 608 REMARK 465 THR B 609 REMARK 465 GLY B 610 REMARK 465 THR B 611 REMARK 465 GLU B 612 REMARK 465 GLU B 613 REMARK 465 THR B 614 REMARK 465 LYS B 615 REMARK 465 GLN B 616 REMARK 465 ASP B 617 REMARK 465 ASP B 618 REMARK 465 ASP B 619 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 85 CG CD OE1 OE2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 PHE A 114 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 115 CG CD OE1 OE2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 THR A 117 OG1 CG2 REMARK 470 ILE A 118 CG1 CG2 CD1 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLN A 121 CG CD OE1 NE2 REMARK 470 VAL A 123 CG1 CG2 REMARK 470 VAL A 127 CG1 CG2 REMARK 470 GLU A 130 CG CD OE1 OE2 REMARK 470 VAL A 131 CG1 CG2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 GLU A 134 CG CD OE1 OE2 REMARK 470 GLU A 138 CG CD OE1 OE2 REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 ASP A 148 CG OD1 OD2 REMARK 470 ASP A 194 CG OD1 OD2 REMARK 470 LYS A 195 CG CD CE NZ REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 ASP A 197 CG OD1 OD2 REMARK 470 ASP A 198 CG OD1 OD2 REMARK 470 CYS A 239 SG REMARK 470 PHE A 240 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 241 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 242 CG OD1 ND2 REMARK 470 ASP A 243 CG OD1 OD2 REMARK 470 CYS A 244 SG REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 ARG A 311 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 312 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 313 CG OD1 OD2 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 ARG A 362 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 389 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 422 CG CD OE1 NE2 REMARK 470 ASP A 423 CG OD1 OD2 REMARK 470 GLU A 445 CG CD OE1 OE2 REMARK 470 GLN A 470 CG CD OE1 NE2 REMARK 470 GLN A 501 CG CD OE1 NE2 REMARK 470 GLN A 515 CG CD OE1 NE2 REMARK 470 GLU A 519 CG CD OE1 OE2 REMARK 470 LYS A 540 CG CD CE NZ REMARK 470 GLU A 541 CG CD OE1 OE2 REMARK 470 LYS A 555 CE NZ REMARK 470 GLU A 562 CG CD OE1 OE2 REMARK 470 MET A 564 CG SD CE REMARK 470 LYS A 572 NZ REMARK 470 LYS A 590 CG CD CE NZ REMARK 470 ASP A 628 CG OD1 OD2 REMARK 470 PHE A 634 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 640 CG CD OE1 OE2 REMARK 470 GLU A 641 CG CD OE1 OE2 REMARK 470 GLU A 649 CG CD OE1 OE2 REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 LYS B 27 CG CD CE NZ REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 GLU B 126 CG CD OE1 OE2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 GLU B 140 CG CD OE1 OE2 REMARK 470 GLU B 172 CG CD OE1 OE2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 GLU B 182 CG CD OE1 OE2 REMARK 470 LYS B 187 CG CD CE NZ REMARK 470 ASN B 247 CG OD1 ND2 REMARK 470 ASP B 262 CG OD1 OD2 REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 GLU B 357 CG CD OE1 OE2 REMARK 470 PHE B 359 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 410 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 415 CG CD CE NZ REMARK 470 GLU B 441 CG CD OE1 OE2 REMARK 470 LYS B 445 CG CD CE NZ REMARK 470 ASP B 513 CG OD1 OD2 REMARK 470 GLU B 515 CG CD OE1 OE2 REMARK 470 GLU B 554 CG CD OE1 OE2 REMARK 470 GLU B 558 CG CD OE1 OE2 REMARK 470 LYS B 559 CG CD CE NZ REMARK 470 LYS B 561 CG CD CE NZ REMARK 470 GLU B 566 CG CD OE1 OE2 REMARK 470 GLU B 576 CG CD OE1 OE2 REMARK 470 LYS B 593 CG CD CE NZ REMARK 470 LYS B 595 CG CD CE NZ REMARK 470 LYS B 596 CG CD CE NZ REMARK 470 LYS B 607 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 238 4.70 -67.96 REMARK 500 ASP A 243 -2.01 69.22 REMARK 500 CYS A 386 38.04 -97.41 REMARK 500 LEU A 398 -80.11 -84.21 REMARK 500 TYR A 399 177.40 163.92 REMARK 500 ASP A 423 -6.68 72.87 REMARK 500 LEU A 425 -2.83 65.66 REMARK 500 GLN A 468 -60.06 -99.56 REMARK 500 GLN A 470 8.64 58.96 REMARK 500 ASP A 521 64.79 61.24 REMARK 500 ARG A 614 17.31 59.59 REMARK 500 ALA B 29 2.55 -68.74 REMARK 500 ILE B 42 125.66 -39.03 REMARK 500 TYR B 43 -169.50 -102.86 REMARK 500 ASN B 60 58.68 39.12 REMARK 500 SER B 209 82.32 53.92 REMARK 500 PRO B 210 -7.33 -47.56 REMARK 500 LEU B 240 79.78 -114.97 REMARK 500 LEU B 304 67.11 61.42 REMARK 500 LEU B 338 -82.20 -66.92 REMARK 500 TYR B 339 178.88 166.46 REMARK 500 GLU B 357 2.05 -67.78 REMARK 500 HIS B 408 20.98 -140.57 REMARK 500 GLU B 487 71.58 50.94 REMARK 500 HIS B 491 52.17 -91.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 1000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9884 RELATED DB: EMDB REMARK 900 STRUCTURE OF HUMAN SOLUBLE GUANYLATE CYCLASE IN THE HEME OXIDISED REMARK 900 STATE DBREF 6JT1 A 1 690 UNP Q02108 GCYA1_HUMAN 1 690 DBREF 6JT1 B 1 619 UNP Q02153 GCYB1_HUMAN 1 619 SEQADV 6JT1 MET A 44 UNP Q02108 VAL 44 VARIANT SEQADV 6JT1 VAL A 554 UNP Q02108 LEU 554 VARIANT SEQRES 1 A 690 MET PHE CYS THR LYS LEU LYS ASP LEU LYS ILE THR GLY SEQRES 2 A 690 GLU CYS PRO PHE SER LEU LEU ALA PRO GLY GLN VAL PRO SEQRES 3 A 690 ASN GLU SER SER GLU GLU ALA ALA GLY SER SER GLU SER SEQRES 4 A 690 CYS LYS ALA THR MET PRO ILE CYS GLN ASP ILE PRO GLU SEQRES 5 A 690 LYS ASN ILE GLN GLU SER LEU PRO GLN ARG LYS THR SER SEQRES 6 A 690 ARG SER ARG VAL TYR LEU HIS THR LEU ALA GLU SER ILE SEQRES 7 A 690 CYS LYS LEU ILE PHE PRO GLU PHE GLU ARG LEU ASN VAL SEQRES 8 A 690 ALA LEU GLN ARG THR LEU ALA LYS HIS LYS ILE LYS GLU SEQRES 9 A 690 SER ARG LYS SER LEU GLU ARG GLU ASP PHE GLU LYS THR SEQRES 10 A 690 ILE ALA GLU GLN ALA VAL ALA ALA GLY VAL PRO VAL GLU SEQRES 11 A 690 VAL ILE LYS GLU SER LEU GLY GLU GLU VAL PHE LYS ILE SEQRES 12 A 690 CYS TYR GLU GLU ASP GLU ASN ILE LEU GLY VAL VAL GLY SEQRES 13 A 690 GLY THR LEU LYS ASP PHE LEU ASN SER PHE SER THR LEU SEQRES 14 A 690 LEU LYS GLN SER SER HIS CYS GLN GLU ALA GLY LYS ARG SEQRES 15 A 690 GLY ARG LEU GLU ASP ALA SER ILE LEU CYS LEU ASP LYS SEQRES 16 A 690 GLU ASP ASP PHE LEU HIS VAL TYR TYR PHE PHE PRO LYS SEQRES 17 A 690 ARG THR THR SER LEU ILE LEU PRO GLY ILE ILE LYS ALA SEQRES 18 A 690 ALA ALA HIS VAL LEU TYR GLU THR GLU VAL GLU VAL SER SEQRES 19 A 690 LEU MET PRO PRO CYS PHE HIS ASN ASP CYS SER GLU PHE SEQRES 20 A 690 VAL ASN GLN PRO TYR LEU LEU TYR SER VAL HIS MET LYS SEQRES 21 A 690 SER THR LYS PRO SER LEU SER PRO SER LYS PRO GLN SER SEQRES 22 A 690 SER LEU VAL ILE PRO THR SER LEU PHE CYS LYS THR PHE SEQRES 23 A 690 PRO PHE HIS PHE MET PHE ASP LYS ASP MET THR ILE LEU SEQRES 24 A 690 GLN PHE GLY ASN GLY ILE ARG ARG LEU MET ASN ARG ARG SEQRES 25 A 690 ASP PHE GLN GLY LYS PRO ASN PHE GLU GLU TYR PHE GLU SEQRES 26 A 690 ILE LEU THR PRO LYS ILE ASN GLN THR PHE SER GLY ILE SEQRES 27 A 690 MET THR MET LEU ASN MET GLN PHE VAL VAL ARG VAL ARG SEQRES 28 A 690 ARG TRP ASP ASN SER VAL LYS LYS SER SER ARG VAL MET SEQRES 29 A 690 ASP LEU LYS GLY GLN MET ILE TYR ILE VAL GLU SER SER SEQRES 30 A 690 ALA ILE LEU PHE LEU GLY SER PRO CYS VAL ASP ARG LEU SEQRES 31 A 690 GLU ASP PHE THR GLY ARG GLY LEU TYR LEU SER ASP ILE SEQRES 32 A 690 PRO ILE HIS ASN ALA LEU ARG ASP VAL VAL LEU ILE GLY SEQRES 33 A 690 GLU GLN ALA ARG ALA GLN ASP GLY LEU LYS LYS ARG LEU SEQRES 34 A 690 GLY LYS LEU LYS ALA THR LEU GLU GLN ALA HIS GLN ALA SEQRES 35 A 690 LEU GLU GLU GLU LYS LYS LYS THR VAL ASP LEU LEU CYS SEQRES 36 A 690 SER ILE PHE PRO CYS GLU VAL ALA GLN GLN LEU TRP GLN SEQRES 37 A 690 GLY GLN VAL VAL GLN ALA LYS LYS PHE SER ASN VAL THR SEQRES 38 A 690 MET LEU PHE SER ASP ILE VAL GLY PHE THR ALA ILE CYS SEQRES 39 A 690 SER GLN CYS SER PRO LEU GLN VAL ILE THR MET LEU ASN SEQRES 40 A 690 ALA LEU TYR THR ARG PHE ASP GLN GLN CYS GLY GLU LEU SEQRES 41 A 690 ASP VAL TYR LYS VAL GLU THR ILE GLY ASP ALA TYR CYS SEQRES 42 A 690 VAL ALA GLY GLY LEU HIS LYS GLU SER ASP THR HIS ALA SEQRES 43 A 690 VAL GLN ILE ALA LEU MET ALA VAL LYS MET MET GLU LEU SEQRES 44 A 690 SER ASP GLU VAL MET SER PRO HIS GLY GLU PRO ILE LYS SEQRES 45 A 690 MET ARG ILE GLY LEU HIS SER GLY SER VAL PHE ALA GLY SEQRES 46 A 690 VAL VAL GLY VAL LYS MET PRO ARG TYR CYS LEU PHE GLY SEQRES 47 A 690 ASN ASN VAL THR LEU ALA ASN LYS PHE GLU SER CYS SER SEQRES 48 A 690 VAL PRO ARG LYS ILE ASN VAL SER PRO THR THR TYR ARG SEQRES 49 A 690 LEU LEU LYS ASP CYS PRO GLY PHE VAL PHE THR PRO ARG SEQRES 50 A 690 SER ARG GLU GLU LEU PRO PRO ASN PHE PRO SER GLU ILE SEQRES 51 A 690 PRO GLY ILE CYS HIS PHE LEU ASP ALA TYR GLN GLN GLY SEQRES 52 A 690 THR ASN SER LYS PRO CYS PHE GLN LYS LYS ASP VAL GLU SEQRES 53 A 690 ASP GLY ASN ALA ASN PHE LEU GLY LYS ALA SER GLY ILE SEQRES 54 A 690 ASP SEQRES 1 B 619 MET TYR GLY PHE VAL ASN HIS ALA LEU GLU LEU LEU VAL SEQRES 2 B 619 ILE ARG ASN TYR GLY PRO GLU VAL TRP GLU ASP ILE LYS SEQRES 3 B 619 LYS GLU ALA GLN LEU ASP GLU GLU GLY GLN PHE LEU VAL SEQRES 4 B 619 ARG ILE ILE TYR ASP ASP SER LYS THR TYR ASP LEU VAL SEQRES 5 B 619 ALA ALA ALA SER LYS VAL LEU ASN LEU ASN ALA GLY GLU SEQRES 6 B 619 ILE LEU GLN MET PHE GLY LYS MET PHE PHE VAL PHE CYS SEQRES 7 B 619 GLN GLU SER GLY TYR ASP THR ILE LEU ARG VAL LEU GLY SEQRES 8 B 619 SER ASN VAL ARG GLU PHE LEU GLN ASN LEU ASP ALA LEU SEQRES 9 B 619 HIS ASP HIS LEU ALA THR ILE TYR PRO GLY MET ARG ALA SEQRES 10 B 619 PRO SER PHE ARG CYS THR ASP ALA GLU LYS GLY LYS GLY SEQRES 11 B 619 LEU ILE LEU HIS TYR TYR SER GLU ARG GLU GLY LEU GLN SEQRES 12 B 619 ASP ILE VAL ILE GLY ILE ILE LYS THR VAL ALA GLN GLN SEQRES 13 B 619 ILE HIS GLY THR GLU ILE ASP MET LYS VAL ILE GLN GLN SEQRES 14 B 619 ARG ASN GLU GLU CYS ASP HIS THR GLN PHE LEU ILE GLU SEQRES 15 B 619 GLU LYS GLU SER LYS GLU GLU ASP PHE TYR GLU ASP LEU SEQRES 16 B 619 ASP ARG PHE GLU GLU ASN GLY THR GLN GLU SER ARG ILE SEQRES 17 B 619 SER PRO TYR THR PHE CYS LYS ALA PHE PRO PHE HIS ILE SEQRES 18 B 619 ILE PHE ASP ARG ASP LEU VAL VAL THR GLN CYS GLY ASN SEQRES 19 B 619 ALA ILE TYR ARG VAL LEU PRO GLN LEU GLN PRO GLY ASN SEQRES 20 B 619 CYS SER LEU LEU SER VAL PHE SER LEU VAL ARG PRO HIS SEQRES 21 B 619 ILE ASP ILE SER PHE HIS GLY ILE LEU SER HIS ILE ASN SEQRES 22 B 619 THR VAL PHE VAL LEU ARG SER LYS GLU GLY LEU LEU ASP SEQRES 23 B 619 VAL GLU LYS LEU GLU CYS GLU ASP GLU LEU THR GLY THR SEQRES 24 B 619 GLU ILE SER CYS LEU ARG LEU LYS GLY GLN MET ILE TYR SEQRES 25 B 619 LEU PRO GLU ALA ASP SER ILE LEU PHE LEU CYS SER PRO SEQRES 26 B 619 SER VAL MET ASN LEU ASP ASP LEU THR ARG ARG GLY LEU SEQRES 27 B 619 TYR LEU SER ASP ILE PRO LEU HIS ASP ALA THR ARG ASP SEQRES 28 B 619 LEU VAL LEU LEU GLY GLU GLN PHE ARG GLU GLU TYR LYS SEQRES 29 B 619 LEU THR GLN GLU LEU GLU ILE LEU THR ASP ARG LEU GLN SEQRES 30 B 619 LEU THR LEU ARG ALA LEU GLU ASP GLU LYS LYS LYS THR SEQRES 31 B 619 ASP THR LEU LEU TYR SER VAL LEU PRO PRO SER VAL ALA SEQRES 32 B 619 ASN GLU LEU ARG HIS LYS ARG PRO VAL PRO ALA LYS ARG SEQRES 33 B 619 TYR ASP ASN VAL THR ILE LEU PHE SER GLY ILE VAL GLY SEQRES 34 B 619 PHE ASN ALA PHE CYS SER LYS HIS ALA SER GLY GLU GLY SEQRES 35 B 619 ALA MET LYS ILE VAL ASN LEU LEU ASN ASP LEU TYR THR SEQRES 36 B 619 ARG PHE ASP THR LEU THR ASP SER ARG LYS ASN PRO PHE SEQRES 37 B 619 VAL TYR LYS VAL GLU THR VAL GLY ASP LYS TYR MET THR SEQRES 38 B 619 VAL SER GLY LEU PRO GLU PRO CYS ILE HIS HIS ALA ARG SEQRES 39 B 619 SER ILE CYS HIS LEU ALA LEU ASP MET MET GLU ILE ALA SEQRES 40 B 619 GLY GLN VAL GLN VAL ASP GLY GLU SER VAL GLN ILE THR SEQRES 41 B 619 ILE GLY ILE HIS THR GLY GLU VAL VAL THR GLY VAL ILE SEQRES 42 B 619 GLY GLN ARG MET PRO ARG TYR CYS LEU PHE GLY ASN THR SEQRES 43 B 619 VAL ASN LEU THR SER ARG THR GLU THR THR GLY GLU LYS SEQRES 44 B 619 GLY LYS ILE ASN VAL SER GLU TYR THR TYR ARG CYS LEU SEQRES 45 B 619 MET SER PRO GLU ASN SER ASP PRO GLN PHE HIS LEU GLU SEQRES 46 B 619 HIS ARG GLY PRO VAL SER MET LYS GLY LYS LYS GLU PRO SEQRES 47 B 619 MET GLN VAL TRP PHE LEU SER ARG LYS ASN THR GLY THR SEQRES 48 B 619 GLU GLU THR LYS GLN ASP ASP ASP HET HEM B1000 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 HEM C34 H32 FE N4 O4 HELIX 1 AA1 TYR A 70 PHE A 83 1 14 HELIX 2 AA2 GLU A 85 LYS A 101 1 17 HELIX 3 AA3 GLU A 115 GLY A 126 1 12 HELIX 4 AA4 PRO A 128 GLU A 149 1 22 HELIX 5 AA5 ASN A 150 GLY A 156 1 7 HELIX 6 AA6 THR A 158 SER A 174 1 17 HELIX 7 AA7 THR A 210 GLU A 228 1 19 HELIX 8 AA8 PRO A 237 ASN A 242 1 6 HELIX 9 AA9 PRO A 278 PHE A 286 1 9 HELIX 10 AB1 GLY A 302 MET A 309 1 8 HELIX 11 AB2 ASN A 319 TYR A 323 1 5 HELIX 12 AB3 THR A 334 MET A 341 1 8 HELIX 13 AB4 ARG A 389 THR A 394 5 6 HELIX 14 AB5 LEU A 409 ALA A 419 1 11 HELIX 15 AB6 ALA A 421 LEU A 425 5 5 HELIX 16 AB7 LYS A 426 PHE A 458 1 33 HELIX 17 AB8 PRO A 459 GLN A 468 1 10 HELIX 18 AB9 GLY A 489 GLN A 496 1 8 HELIX 19 AC1 SER A 498 ASP A 521 1 24 HELIX 20 AC2 THR A 544 ASP A 561 1 18 HELIX 21 AC3 GLY A 598 SER A 609 1 12 HELIX 22 AC4 SER A 619 LYS A 627 1 9 HELIX 23 AC5 TYR B 2 GLN B 30 1 29 HELIX 24 AC6 ASP B 44 LEU B 59 1 16 HELIX 25 AC7 ASN B 62 SER B 81 1 20 HELIX 26 AC8 TYR B 83 LEU B 90 1 8 HELIX 27 AC9 ASN B 93 ASN B 100 1 8 HELIX 28 AD1 ASP B 102 TYR B 112 1 11 HELIX 29 AD2 ASP B 144 ILE B 157 1 14 HELIX 30 AD3 PRO B 210 PHE B 217 1 8 HELIX 31 AD4 GLY B 233 LEU B 240 1 8 HELIX 32 AD5 PRO B 241 GLN B 244 5 4 HELIX 33 AD6 SER B 264 HIS B 271 1 8 HELIX 34 AD7 ASN B 329 GLY B 337 1 9 HELIX 35 AD8 ASP B 347 LEU B 354 1 8 HELIX 36 AD9 PHE B 359 TYR B 395 1 37 HELIX 37 AE1 PRO B 399 ARG B 407 1 9 HELIX 38 AE2 GLY B 429 HIS B 437 1 9 HELIX 39 AE3 SER B 439 THR B 461 1 23 HELIX 40 AE4 HIS B 491 GLY B 508 1 18 HELIX 41 AE5 GLY B 544 GLY B 557 1 14 HELIX 42 AE6 GLU B 566 MET B 573 1 8 SHEET 1 AA1 4 SER A 189 LEU A 193 0 SHEET 2 AA1 4 LEU A 200 PHE A 205 -1 O HIS A 201 N LEU A 193 SHEET 3 AA1 4 TYR A 255 HIS A 258 -1 O TYR A 255 N VAL A 202 SHEET 4 AA1 4 GLU A 232 LEU A 235 -1 N SER A 234 O SER A 256 SHEET 1 AA2 6 ILE A 298 GLN A 300 0 SHEET 2 AA2 6 HIS A 289 PHE A 292 -1 N MET A 291 O LEU A 299 SHEET 3 AA2 6 ALA A 378 PRO A 385 -1 O ILE A 379 N PHE A 292 SHEET 4 AA2 6 MET A 364 ILE A 373 -1 N ILE A 371 O LEU A 380 SHEET 5 AA2 6 PHE A 346 VAL A 350 -1 N PHE A 346 O GLY A 368 SHEET 6 AA2 6 PHE A 324 ILE A 326 -1 N GLU A 325 O ARG A 349 SHEET 1 AA3 3 LYS A 475 MET A 482 0 SHEET 2 AA3 3 HIS A 578 ALA A 584 -1 O GLY A 580 N VAL A 480 SHEET 3 AA3 3 LEU A 596 PHE A 597 -1 O PHE A 597 N PHE A 583 SHEET 1 AA4 5 ASP A 486 ILE A 487 0 SHEET 2 AA4 5 MET A 573 ILE A 575 -1 O ARG A 574 N ASP A 486 SHEET 3 AA4 5 LYS A 615 VAL A 618 1 O ASN A 617 N ILE A 575 SHEET 4 AA4 5 HIS A 655 LEU A 657 -1 O HIS A 655 N VAL A 618 SHEET 5 AA4 5 PHE A 634 PRO A 636 -1 N THR A 635 O PHE A 656 SHEET 1 AA5 2 TYR A 523 VAL A 525 0 SHEET 2 AA5 2 CYS A 533 ALA A 535 -1 O ALA A 535 N TYR A 523 SHEET 1 AA6 4 THR B 123 ASP B 124 0 SHEET 2 AA6 4 LEU B 131 TYR B 135 -1 O ILE B 132 N THR B 123 SHEET 3 AA6 4 THR B 177 GLU B 183 -1 O THR B 177 N TYR B 135 SHEET 4 AA6 4 ILE B 162 GLN B 168 -1 N ILE B 167 O GLN B 178 SHEET 1 AA7 5 VAL B 229 CYS B 232 0 SHEET 2 AA7 5 HIS B 220 ASP B 224 -1 N ILE B 222 O THR B 230 SHEET 3 AA7 5 SER B 318 PRO B 325 -1 O PHE B 321 N ILE B 221 SHEET 4 AA7 5 ARG B 305 LEU B 313 -1 N ILE B 311 O LEU B 320 SHEET 5 AA7 5 PHE B 276 ARG B 279 -1 N PHE B 276 O GLY B 308 SHEET 1 AA8 5 TYR B 470 VAL B 472 0 SHEET 2 AA8 5 TYR B 479 SER B 483 -1 O VAL B 482 N TYR B 470 SHEET 3 AA8 5 LYS B 415 SER B 425 -1 N THR B 421 O SER B 483 SHEET 4 AA8 5 ILE B 521 ILE B 533 -1 O HIS B 524 N ILE B 422 SHEET 5 AA8 5 ARG B 539 PHE B 543 -1 O ARG B 539 N ILE B 533 SHEET 1 AA9 7 TYR B 470 VAL B 472 0 SHEET 2 AA9 7 TYR B 479 SER B 483 -1 O VAL B 482 N TYR B 470 SHEET 3 AA9 7 LYS B 415 SER B 425 -1 N THR B 421 O SER B 483 SHEET 4 AA9 7 ILE B 521 ILE B 533 -1 O HIS B 524 N ILE B 422 SHEET 5 AA9 7 ILE B 562 SER B 565 1 O ASN B 563 N ILE B 521 SHEET 6 AA9 7 MET B 599 ARG B 606 -1 O TRP B 602 N VAL B 564 SHEET 7 AA9 7 PHE B 582 VAL B 590 -1 N VAL B 590 O MET B 599 SHEET 1 AB1 2 GLN B 511 VAL B 512 0 SHEET 2 AB1 2 GLU B 515 SER B 516 -1 O GLU B 515 N VAL B 512 CISPEP 1 THR A 328 PRO A 329 0 -13.80 CISPEP 2 ARG B 258 PRO B 259 0 -10.85 SITE 1 AC1 15 TYR B 2 VAL B 5 LEU B 87 LEU B 101 SITE 2 AC1 15 HIS B 105 LEU B 108 MET B 115 ARG B 116 SITE 3 AC1 15 PRO B 118 TYR B 135 SER B 137 ARG B 139 SITE 4 AC1 15 VAL B 146 ILE B 149 ILE B 150 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000