HEADER MEMBRANE PROTEIN 13-APR-19 6JUH
TITLE STRUCTURE OF CAVAB IN COMPLEX WITH EFONIDIPINE
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ION TRANSPORT PROTEIN;
COMPND 3 CHAIN: A, B, C, D;
COMPND 4 ENGINEERED: YES;
COMPND 5 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: ARCOBACTER BUTZLERI RM4018;
SOURCE 3 ORGANISM_TAXID: 367737;
SOURCE 4 STRAIN: RM4018;
SOURCE 5 VARIANT: RM4018;
SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111
KEYWDS VOLTAGE-GATED CALCIUM CHANNEL BLOCK, MEMBRANE PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR L.TANG,F.XU
REVDAT 2 22-NOV-23 6JUH 1 REMARK
REVDAT 1 06-NOV-19 6JUH 0
JRNL AUTH F.XU,W.XIONG,Y.HUANG,J.SHEN,D.ZHOU,L.TANG
JRNL TITL STRUCTURAL BASIS FOR EFONIDIPINE BLOCK OF A VOLTAGE-GATED
JRNL TITL 2 CA2+CHANNEL.
JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 513 631 2019
JRNL REFN ESSN 1090-2104
JRNL PMID 30981510
JRNL DOI 10.1016/J.BBRC.2019.03.176
REMARK 2
REMARK 2 RESOLUTION. 3.00 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_1839
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.82
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 88.6
REMARK 3 NUMBER OF REFLECTIONS : 53911
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.238
REMARK 3 R VALUE (WORKING SET) : 0.235
REMARK 3 FREE R VALUE : 0.291
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.940
REMARK 3 FREE R VALUE TEST SET COUNT : 2663
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 29.8197 - 7.9569 0.89 2871 180 0.2323 0.2805
REMARK 3 2 7.9569 - 6.3356 0.90 2819 141 0.2726 0.2881
REMARK 3 3 6.3356 - 5.5405 0.92 2837 145 0.2810 0.3581
REMARK 3 4 5.5405 - 5.0366 0.92 2815 155 0.2311 0.3058
REMARK 3 5 5.0366 - 4.6771 0.93 2832 149 0.2013 0.2736
REMARK 3 6 4.6771 - 4.4022 0.93 2833 149 0.1988 0.2462
REMARK 3 7 4.4022 - 4.1824 0.93 2818 154 0.2100 0.2677
REMARK 3 8 4.1824 - 4.0008 0.93 2841 148 0.2157 0.2999
REMARK 3 9 4.0008 - 3.8471 0.70 2115 105 0.2076 0.2935
REMARK 3 10 3.8471 - 3.7146 0.94 2843 157 0.2183 0.2421
REMARK 3 11 3.7146 - 3.5986 0.64 1908 109 0.2365 0.2919
REMARK 3 12 3.5986 - 3.4959 0.94 2848 145 0.2200 0.3348
REMARK 3 13 3.4959 - 3.4040 0.58 1756 87 0.2275 0.2476
REMARK 3 14 3.4040 - 3.3211 0.94 2844 139 0.2201 0.2697
REMARK 3 15 3.3211 - 3.2457 0.95 2860 142 0.2460 0.2884
REMARK 3 16 3.2457 - 3.1767 0.95 2837 153 0.2802 0.3450
REMARK 3 17 3.1767 - 3.1132 0.95 2875 154 0.3037 0.3136
REMARK 3 18 3.1132 - 3.0545 0.95 2819 137 0.3113 0.3867
REMARK 3 19 3.0545 - 3.0000 0.94 2877 114 0.3341 0.4016
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.840
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.011 9053
REMARK 3 ANGLE : 1.435 12290
REMARK 3 CHIRALITY : 0.082 1464
REMARK 3 PLANARITY : 0.007 1462
REMARK 3 DIHEDRAL : 19.125 3215
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: ALL
REMARK 3 ORIGIN FOR THE GROUP (A): -3.3270 30.9757 32.4806
REMARK 3 T TENSOR
REMARK 3 T11: 0.3570 T22: 0.3743
REMARK 3 T33: 0.3570 T12: -0.0070
REMARK 3 T13: -0.0222 T23: 0.0146
REMARK 3 L TENSOR
REMARK 3 L11: 0.3169 L22: 0.2123
REMARK 3 L33: 0.5289 L12: -0.0049
REMARK 3 L13: -0.0544 L23: -0.0278
REMARK 3 S TENSOR
REMARK 3 S11: 0.0273 S12: -0.1163 S13: -0.0179
REMARK 3 S21: 0.0836 S22: 0.0019 S23: -0.0104
REMARK 3 S31: -0.0474 S32: -0.0298 S33: 0.0000
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6JUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-APR-19.
REMARK 100 THE DEPOSITION ID IS D_1300011729.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 09-APR-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 8.2.1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.987
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM
REMARK 200 DATA SCALING SOFTWARE : HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53912
REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 89.0
REMARK 200 DATA REDUNDANCY : 5.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 4MS2
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 79.86
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.11
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0-2.0M AMMONIUM SULFATE 100 MM NA
REMARK 280 -CITRATE PH=5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE
REMARK 280 277.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 2 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,-Y,-Z+1/2
REMARK 290 4555 -X+1/2,-Y,Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.43000
REMARK 290 SMTRY2 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.71000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.43000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.71000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 26390 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 53220 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -228.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 SER A 1264
REMARK 465 LEU A 1265
REMARK 465 LYS A 1266
REMARK 465 ASN A 1267
REMARK 465 SER B 1264
REMARK 465 LEU B 1265
REMARK 465 LYS B 1266
REMARK 465 ASN B 1267
REMARK 465 LYS C 1262
REMARK 465 THR C 1263
REMARK 465 SER C 1264
REMARK 465 LEU C 1265
REMARK 465 LYS C 1266
REMARK 465 ASN C 1267
REMARK 465 SER D 1264
REMARK 465 LEU D 1265
REMARK 465 LYS D 1266
REMARK 465 ASN D 1267
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 PRO B1090 C - N - CA ANGL. DEV. = 14.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ILE A1069 -61.77 70.73
REMARK 500 PRO A1090 150.47 -46.56
REMARK 500 SER A1093 178.77 86.26
REMARK 500 THR A1175 5.24 -66.75
REMARK 500 ALA A1194 -29.42 -34.92
REMARK 500 GLU A1240 -64.25 69.64
REMARK 500 LEU A1257 60.07 -111.39
REMARK 500 GLU B1032 0.38 -66.23
REMARK 500 ARG B1068 -134.72 47.41
REMARK 500 PRO B1090 145.31 -16.27
REMARK 500 SER B1093 -177.74 77.85
REMARK 500 ARG B1108 -4.47 -56.75
REMARK 500 PHE B1160 13.84 -148.61
REMARK 500 THR B1175 10.61 -65.97
REMARK 500 ILE B1183 -52.11 -139.38
REMARK 500 LEU B1257 36.33 -91.77
REMARK 500 GLU B1259 0.63 -53.83
REMARK 500 PHE C1041 19.98 -150.62
REMARK 500 ARG C1068 -137.92 50.35
REMARK 500 PRO C1090 -133.60 -31.43
REMARK 500 SER C1092 -62.24 71.57
REMARK 500 SER C1093 -133.44 51.00
REMARK 500 GLN C1115 -58.05 71.09
REMARK 500 ILE C1183 -59.08 -139.66
REMARK 500 ALA C1194 -9.12 -53.49
REMARK 500 GLU C1252 32.25 -92.63
REMARK 500 PHE D1041 21.87 -148.76
REMARK 500 ARG D1068 -124.54 44.61
REMARK 500 SER D1092 -165.68 72.58
REMARK 500 SER D1093 -32.21 146.81
REMARK 500 GLU D1096 51.45 -117.35
REMARK 500 PHE D1160 11.45 -144.47
REMARK 500 ASP D1241 -12.82 -146.86
REMARK 500 LEU D1260 24.27 -78.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 MC3 A 1301
REMARK 610 PX4 A 1302
REMARK 610 MC3 B 1302
REMARK 610 PX4 B 1303
REMARK 610 MC3 C 1302
REMARK 610 PX4 C 1303
REMARK 610 PX4 C 1304
REMARK 610 MC3 D 1302
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MC3 A 1301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 1302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue G3P A 1303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MC3 B 1302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 B 1303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 1301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MC3 C 1302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 C 1303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 C 1304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue G3P C 1305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue G3P C 1306
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue C9X D 1301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MC3 D 1302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue G3P D 1303
DBREF 6JUH A 1001 1267 UNP A8EVM5 A8EVM5_ARCB4 1 267
DBREF 6JUH B 1001 1267 UNP A8EVM5 A8EVM5_ARCB4 1 267
DBREF 6JUH C 1001 1267 UNP A8EVM5 A8EVM5_ARCB4 1 267
DBREF 6JUH D 1001 1267 UNP A8EVM5 A8EVM5_ARCB4 1 267
SEQADV 6JUH ASP A 1177 UNP A8EVM5 GLU 177 ENGINEERED MUTATION
SEQADV 6JUH ASP A 1178 UNP A8EVM5 SER 178 ENGINEERED MUTATION
SEQADV 6JUH ASN A 1181 UNP A8EVM5 MET 181 ENGINEERED MUTATION
SEQADV 6JUH ASP B 1177 UNP A8EVM5 GLU 177 ENGINEERED MUTATION
SEQADV 6JUH ASP B 1178 UNP A8EVM5 SER 178 ENGINEERED MUTATION
SEQADV 6JUH ASN B 1181 UNP A8EVM5 MET 181 ENGINEERED MUTATION
SEQADV 6JUH ASP C 1177 UNP A8EVM5 GLU 177 ENGINEERED MUTATION
SEQADV 6JUH ASP C 1178 UNP A8EVM5 SER 178 ENGINEERED MUTATION
SEQADV 6JUH ASN C 1181 UNP A8EVM5 MET 181 ENGINEERED MUTATION
SEQADV 6JUH ASP D 1177 UNP A8EVM5 GLU 177 ENGINEERED MUTATION
SEQADV 6JUH ASP D 1178 UNP A8EVM5 SER 178 ENGINEERED MUTATION
SEQADV 6JUH ASN D 1181 UNP A8EVM5 MET 181 ENGINEERED MUTATION
SEQRES 1 A 267 MET TYR LEU ARG ILE THR ASN ILE VAL GLU SER SER PHE
SEQRES 2 A 267 PHE THR LYS PHE ILE ILE TYR LEU ILE VAL LEU ASN GLY
SEQRES 3 A 267 ILE THR MET GLY LEU GLU THR SER LYS THR PHE MET GLN
SEQRES 4 A 267 SER PHE GLY VAL TYR THR THR LEU PHE ASN GLN ILE VAL
SEQRES 5 A 267 ILE THR ILE PHE THR ILE GLU ILE ILE LEU ARG ILE TYR
SEQRES 6 A 267 VAL HIS ARG ILE SER PHE PHE LYS ASP PRO TRP SER LEU
SEQRES 7 A 267 PHE ASP PHE PHE VAL VAL ALA ILE SER LEU VAL PRO THR
SEQRES 8 A 267 SER SER GLY PHE GLU ILE LEU ARG VAL LEU ARG VAL LEU
SEQRES 9 A 267 ARG LEU PHE ARG LEU VAL THR ALA VAL PRO GLN MET ARG
SEQRES 10 A 267 LYS ILE VAL SER ALA LEU ILE SER VAL ILE PRO GLY MET
SEQRES 11 A 267 LEU SER VAL ILE ALA LEU MET THR LEU PHE PHE TYR ILE
SEQRES 12 A 267 PHE ALA ILE MET ALA THR GLN LEU PHE GLY GLU ARG PHE
SEQRES 13 A 267 PRO GLU TRP PHE GLY THR LEU GLY GLU SER PHE TYR THR
SEQRES 14 A 267 LEU PHE GLN VAL MET THR LEU ASP ASP TRP SER ASN GLY
SEQRES 15 A 267 ILE VAL ARG PRO LEU MET GLU VAL TYR PRO TYR ALA TRP
SEQRES 16 A 267 VAL PHE PHE ILE PRO PHE ILE PHE VAL VAL THR PHE VAL
SEQRES 17 A 267 MET ILE ASN LEU VAL VAL ALA ILE ILE VAL ASP ALA MET
SEQRES 18 A 267 ALA ILE LEU ASN GLN LYS GLU GLU GLN HIS ILE ILE ASP
SEQRES 19 A 267 GLU VAL GLN SER HIS GLU ASP ASN ILE ASN ASN GLU ILE
SEQRES 20 A 267 ILE LYS LEU ARG GLU GLU ILE VAL GLU LEU LYS GLU LEU
SEQRES 21 A 267 ILE LYS THR SER LEU LYS ASN
SEQRES 1 B 267 MET TYR LEU ARG ILE THR ASN ILE VAL GLU SER SER PHE
SEQRES 2 B 267 PHE THR LYS PHE ILE ILE TYR LEU ILE VAL LEU ASN GLY
SEQRES 3 B 267 ILE THR MET GLY LEU GLU THR SER LYS THR PHE MET GLN
SEQRES 4 B 267 SER PHE GLY VAL TYR THR THR LEU PHE ASN GLN ILE VAL
SEQRES 5 B 267 ILE THR ILE PHE THR ILE GLU ILE ILE LEU ARG ILE TYR
SEQRES 6 B 267 VAL HIS ARG ILE SER PHE PHE LYS ASP PRO TRP SER LEU
SEQRES 7 B 267 PHE ASP PHE PHE VAL VAL ALA ILE SER LEU VAL PRO THR
SEQRES 8 B 267 SER SER GLY PHE GLU ILE LEU ARG VAL LEU ARG VAL LEU
SEQRES 9 B 267 ARG LEU PHE ARG LEU VAL THR ALA VAL PRO GLN MET ARG
SEQRES 10 B 267 LYS ILE VAL SER ALA LEU ILE SER VAL ILE PRO GLY MET
SEQRES 11 B 267 LEU SER VAL ILE ALA LEU MET THR LEU PHE PHE TYR ILE
SEQRES 12 B 267 PHE ALA ILE MET ALA THR GLN LEU PHE GLY GLU ARG PHE
SEQRES 13 B 267 PRO GLU TRP PHE GLY THR LEU GLY GLU SER PHE TYR THR
SEQRES 14 B 267 LEU PHE GLN VAL MET THR LEU ASP ASP TRP SER ASN GLY
SEQRES 15 B 267 ILE VAL ARG PRO LEU MET GLU VAL TYR PRO TYR ALA TRP
SEQRES 16 B 267 VAL PHE PHE ILE PRO PHE ILE PHE VAL VAL THR PHE VAL
SEQRES 17 B 267 MET ILE ASN LEU VAL VAL ALA ILE ILE VAL ASP ALA MET
SEQRES 18 B 267 ALA ILE LEU ASN GLN LYS GLU GLU GLN HIS ILE ILE ASP
SEQRES 19 B 267 GLU VAL GLN SER HIS GLU ASP ASN ILE ASN ASN GLU ILE
SEQRES 20 B 267 ILE LYS LEU ARG GLU GLU ILE VAL GLU LEU LYS GLU LEU
SEQRES 21 B 267 ILE LYS THR SER LEU LYS ASN
SEQRES 1 C 267 MET TYR LEU ARG ILE THR ASN ILE VAL GLU SER SER PHE
SEQRES 2 C 267 PHE THR LYS PHE ILE ILE TYR LEU ILE VAL LEU ASN GLY
SEQRES 3 C 267 ILE THR MET GLY LEU GLU THR SER LYS THR PHE MET GLN
SEQRES 4 C 267 SER PHE GLY VAL TYR THR THR LEU PHE ASN GLN ILE VAL
SEQRES 5 C 267 ILE THR ILE PHE THR ILE GLU ILE ILE LEU ARG ILE TYR
SEQRES 6 C 267 VAL HIS ARG ILE SER PHE PHE LYS ASP PRO TRP SER LEU
SEQRES 7 C 267 PHE ASP PHE PHE VAL VAL ALA ILE SER LEU VAL PRO THR
SEQRES 8 C 267 SER SER GLY PHE GLU ILE LEU ARG VAL LEU ARG VAL LEU
SEQRES 9 C 267 ARG LEU PHE ARG LEU VAL THR ALA VAL PRO GLN MET ARG
SEQRES 10 C 267 LYS ILE VAL SER ALA LEU ILE SER VAL ILE PRO GLY MET
SEQRES 11 C 267 LEU SER VAL ILE ALA LEU MET THR LEU PHE PHE TYR ILE
SEQRES 12 C 267 PHE ALA ILE MET ALA THR GLN LEU PHE GLY GLU ARG PHE
SEQRES 13 C 267 PRO GLU TRP PHE GLY THR LEU GLY GLU SER PHE TYR THR
SEQRES 14 C 267 LEU PHE GLN VAL MET THR LEU ASP ASP TRP SER ASN GLY
SEQRES 15 C 267 ILE VAL ARG PRO LEU MET GLU VAL TYR PRO TYR ALA TRP
SEQRES 16 C 267 VAL PHE PHE ILE PRO PHE ILE PHE VAL VAL THR PHE VAL
SEQRES 17 C 267 MET ILE ASN LEU VAL VAL ALA ILE ILE VAL ASP ALA MET
SEQRES 18 C 267 ALA ILE LEU ASN GLN LYS GLU GLU GLN HIS ILE ILE ASP
SEQRES 19 C 267 GLU VAL GLN SER HIS GLU ASP ASN ILE ASN ASN GLU ILE
SEQRES 20 C 267 ILE LYS LEU ARG GLU GLU ILE VAL GLU LEU LYS GLU LEU
SEQRES 21 C 267 ILE LYS THR SER LEU LYS ASN
SEQRES 1 D 267 MET TYR LEU ARG ILE THR ASN ILE VAL GLU SER SER PHE
SEQRES 2 D 267 PHE THR LYS PHE ILE ILE TYR LEU ILE VAL LEU ASN GLY
SEQRES 3 D 267 ILE THR MET GLY LEU GLU THR SER LYS THR PHE MET GLN
SEQRES 4 D 267 SER PHE GLY VAL TYR THR THR LEU PHE ASN GLN ILE VAL
SEQRES 5 D 267 ILE THR ILE PHE THR ILE GLU ILE ILE LEU ARG ILE TYR
SEQRES 6 D 267 VAL HIS ARG ILE SER PHE PHE LYS ASP PRO TRP SER LEU
SEQRES 7 D 267 PHE ASP PHE PHE VAL VAL ALA ILE SER LEU VAL PRO THR
SEQRES 8 D 267 SER SER GLY PHE GLU ILE LEU ARG VAL LEU ARG VAL LEU
SEQRES 9 D 267 ARG LEU PHE ARG LEU VAL THR ALA VAL PRO GLN MET ARG
SEQRES 10 D 267 LYS ILE VAL SER ALA LEU ILE SER VAL ILE PRO GLY MET
SEQRES 11 D 267 LEU SER VAL ILE ALA LEU MET THR LEU PHE PHE TYR ILE
SEQRES 12 D 267 PHE ALA ILE MET ALA THR GLN LEU PHE GLY GLU ARG PHE
SEQRES 13 D 267 PRO GLU TRP PHE GLY THR LEU GLY GLU SER PHE TYR THR
SEQRES 14 D 267 LEU PHE GLN VAL MET THR LEU ASP ASP TRP SER ASN GLY
SEQRES 15 D 267 ILE VAL ARG PRO LEU MET GLU VAL TYR PRO TYR ALA TRP
SEQRES 16 D 267 VAL PHE PHE ILE PRO PHE ILE PHE VAL VAL THR PHE VAL
SEQRES 17 D 267 MET ILE ASN LEU VAL VAL ALA ILE ILE VAL ASP ALA MET
SEQRES 18 D 267 ALA ILE LEU ASN GLN LYS GLU GLU GLN HIS ILE ILE ASP
SEQRES 19 D 267 GLU VAL GLN SER HIS GLU ASP ASN ILE ASN ASN GLU ILE
SEQRES 20 D 267 ILE LYS LEU ARG GLU GLU ILE VAL GLU LEU LYS GLU LEU
SEQRES 21 D 267 ILE LYS THR SER LEU LYS ASN
HET MC3 A1301 21
HET PX4 A1302 10
HET G3P A1303 10
HET CA B1301 1
HET MC3 B1302 21
HET PX4 B1303 10
HET CA C1301 1
HET MC3 C1302 21
HET PX4 C1303 10
HET PX4 C1304 10
HET G3P C1305 10
HET G3P C1306 10
HET C9X D1301 45
HET MC3 D1302 21
HET G3P D1303 10
HETNAM MC3 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE
HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
HETNAM G3P SN-GLYCEROL-3-PHOSPHATE
HETNAM CA CALCIUM ION
HETNAM C9X 2-[PHENYL-(PHENYLMETHYL)AMINO]ETHYL (4~{R})-5-(5,5-
HETNAM 2 C9X DIMETHYL-2-OXIDANYLIDENE-1,3,2$L^{5}-DIOXAPHOSPHINAN-
HETNAM 3 C9X 2-YL)-2,6-DIMETHYL-4-(3-NITROPHENYL)-1,4-
HETNAM 4 C9X DIHYDROPYRIDINE-3-CARBOXYLATE
FORMUL 5 MC3 4(C36 H72 N O8 P)
FORMUL 6 PX4 4(C36 H73 N O8 P 1+)
FORMUL 7 G3P 4(C3 H9 O6 P)
FORMUL 8 CA 2(CA 2+)
FORMUL 17 C9X C34 H38 N3 O7 P
HELIX 1 AA1 MET A 1001 GLU A 1010 1 10
HELIX 2 AA2 SER A 1011 GLU A 1032 1 22
HELIX 3 AA3 SER A 1034 ARG A 1068 1 35
HELIX 4 AA4 ILE A 1069 LYS A 1073 5 5
HELIX 5 AA5 ASP A 1074 LEU A 1088 1 15
HELIX 6 AA6 ILE A 1097 ARG A 1102 1 6
HELIX 7 AA7 VAL A 1103 LEU A 1106 5 4
HELIX 8 AA8 PHE A 1107 VAL A 1113 1 7
HELIX 9 AA9 VAL A 1113 SER A 1125 1 13
HELIX 10 AB1 VAL A 1126 GLY A 1153 1 28
HELIX 11 AB2 PHE A 1156 GLY A 1161 1 6
HELIX 12 AB3 THR A 1162 THR A 1175 1 14
HELIX 13 AB4 ASP A 1178 ILE A 1183 1 6
HELIX 14 AB5 ILE A 1183 TYR A 1191 1 9
HELIX 15 AB6 TYR A 1193 GLN A 1237 1 45
HELIX 16 AB7 LEU A 1250 LEU A 1257 1 8
HELIX 17 AB8 TYR B 1002 SER B 1011 1 10
HELIX 18 AB9 SER B 1011 GLU B 1032 1 22
HELIX 19 AC1 SER B 1034 ARG B 1068 1 35
HELIX 20 AC2 ILE B 1069 LYS B 1073 5 5
HELIX 21 AC3 ASP B 1074 ILE B 1086 1 13
HELIX 22 AC4 VAL B 1100 LEU B 1106 5 7
HELIX 23 AC5 PHE B 1107 ALA B 1112 1 6
HELIX 24 AC6 VAL B 1113 SER B 1125 1 13
HELIX 25 AC7 VAL B 1126 GLY B 1153 1 28
HELIX 26 AC8 PHE B 1156 GLY B 1161 1 6
HELIX 27 AC9 THR B 1162 THR B 1175 1 14
HELIX 28 AD1 ILE B 1183 TYR B 1191 1 9
HELIX 29 AD2 TYR B 1193 HIS B 1239 1 47
HELIX 30 AD3 ASN B 1244 GLU B 1256 1 13
HELIX 31 AD4 LEU B 1257 THR B 1263 5 7
HELIX 32 AD5 MET C 1001 MET C 1001 5 1
HELIX 33 AD6 TYR C 1002 GLU C 1010 1 9
HELIX 34 AD7 SER C 1011 GLU C 1032 1 22
HELIX 35 AD8 SER C 1034 PHE C 1041 1 8
HELIX 36 AD9 PHE C 1041 ARG C 1068 1 28
HELIX 37 AE1 ILE C 1069 PHE C 1072 5 4
HELIX 38 AE2 ASP C 1074 VAL C 1089 1 16
HELIX 39 AE3 ILE C 1097 ARG C 1102 1 6
HELIX 40 AE4 VAL C 1103 LEU C 1106 5 4
HELIX 41 AE5 PHE C 1107 VAL C 1113 1 7
HELIX 42 AE6 GLN C 1115 SER C 1125 1 11
HELIX 43 AE7 SER C 1125 GLY C 1153 1 29
HELIX 44 AE8 PHE C 1156 GLY C 1161 1 6
HELIX 45 AE9 THR C 1162 THR C 1175 1 14
HELIX 46 AF1 ILE C 1183 GLU C 1189 1 7
HELIX 47 AF2 VAL C 1190 TYR C 1193 5 4
HELIX 48 AF3 ALA C 1194 ASN C 1244 1 51
HELIX 49 AF4 TYR D 1002 GLU D 1010 1 9
HELIX 50 AF5 SER D 1011 GLU D 1032 1 22
HELIX 51 AF6 SER D 1034 ARG D 1068 1 35
HELIX 52 AF7 ARG D 1068 LYS D 1073 1 6
HELIX 53 AF8 ASP D 1074 VAL D 1089 1 16
HELIX 54 AF9 ILE D 1097 ARG D 1102 1 6
HELIX 55 AG1 VAL D 1103 LEU D 1106 5 4
HELIX 56 AG2 PHE D 1107 VAL D 1113 1 7
HELIX 57 AG3 GLN D 1115 VAL D 1126 1 12
HELIX 58 AG4 VAL D 1126 GLY D 1153 1 28
HELIX 59 AG5 PHE D 1156 GLY D 1161 1 6
HELIX 60 AG6 THR D 1162 THR D 1175 1 14
HELIX 61 AG7 ILE D 1183 TYR D 1191 1 9
HELIX 62 AG8 ALA D 1194 ILE D 1199 1 6
HELIX 63 AG9 ILE D 1199 ILE D 1243 1 45
HELIX 64 AH1 ILE D 1254 LEU D 1260 1 7
SITE 1 AC1 4 THR A1162 GLY A1164 TYR A1168 PHE B1203
SITE 1 AC2 2 TYR A1191 ALA A1194
SITE 1 AC3 2 SER A1034 THR B1162
SITE 1 AC4 1 CA C1301
SITE 1 AC5 3 GLY B1164 TYR B1168 TRP C1195
SITE 1 AC6 1 TYR B1191
SITE 1 AC7 3 CA B1301 ASP C1178 ASP D1178
SITE 1 AC8 7 PHE C1141 THR C1162 GLY C1164 PHE C1167
SITE 2 AC8 7 TYR C1168 G3P C1305 TRP D1195
SITE 1 AC9 2 ILE C1097 TYR D1191
SITE 1 AD1 2 LEU C1151 TYR C1191
SITE 1 AD2 4 THR C1162 LEU C1163 GLY C1164 MC3 C1302
SITE 1 AD3 2 SER C1034 THR C1036
SITE 1 AD4 5 MET A1174 THR A1206 THR B1206 LEU D1176
SITE 2 AD4 5 ILE D1210
SITE 1 AD5 6 TYR A1193 TRP A1195 PHE D1141 GLY D1164
SITE 2 AD5 6 PHE D1167 TYR D1168
SITE 1 AD6 3 LEU A1163 GLY A1164 SER D1034
CRYST1 124.860 125.520 191.420 90.00 90.00 90.00 P 21 2 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008009 0.000000 0.000000 0.00000
SCALE2 0.000000 0.007967 0.000000 0.00000
SCALE3 0.000000 0.000000 0.005224 0.00000