HEADER REPLICATION/DNA 15-APR-19 6JUL
TITLE MSDPO4-DNA COMPLEX 1
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DNA POLYMERASE IV;
COMPND 3 CHAIN: F, A;
COMPND 4 SYNONYM: POL IV;
COMPND 5 EC: 2.7.7.7;
COMPND 6 ENGINEERED: YES;
COMPND 7 MOL_ID: 2;
COMPND 8 MOLECULE: DNA (5'-D(P*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3');
COMPND 9 CHAIN: H, G, C, B;
COMPND 10 ENGINEERED: YES;
COMPND 11 OTHER_DETAILS: DNA PRIMER
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS STR. MC2 155;
SOURCE 3 ORGANISM_TAXID: 246196;
SOURCE 4 VARIANT: ATCC 700084 / MC(2)155;
SOURCE 5 GENE: DINB, MSMEG_1014, MSMEG_2294;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41DE3;
SOURCE 9 MOL_ID: 2;
SOURCE 10 SYNTHETIC: YES;
SOURCE 11 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI;
SOURCE 12 ORGANISM_TAXID: 562
KEYWDS DNA POLYMERASE, REPLICATION, REPLICATION-DNA COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR D.T.NAIR,M.K.JOHNSON
REVDAT 2 13-NOV-24 6JUL 1 LINK
REVDAT 1 19-FEB-20 6JUL 0
JRNL AUTH M.K.JOHNSON,J.KOTTUR,D.T.NAIR
JRNL TITL A POLAR FILTER IN DNA POLYMERASES PREVENTS RIBONUCLEOTIDE
JRNL TITL 2 INCORPORATION.
JRNL REF NUCLEIC ACIDS RES. V. 47 10693 2019
JRNL REFN ESSN 1362-4962
JRNL PMID 31544946
JRNL DOI 10.1093/NAR/GKZ792
REMARK 2
REMARK 2 RESOLUTION. 2.30 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0155
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.17
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 39754
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.203
REMARK 3 R VALUE (WORKING SET) : 0.200
REMARK 3 FREE R VALUE : 0.259
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 2145
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36
REMARK 3 REFLECTION IN BIN (WORKING SET) : 2897
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.2750
REMARK 3 BIN FREE R VALUE SET COUNT : 175
REMARK 3 BIN FREE R VALUE : 0.3750
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5290
REMARK 3 NUCLEIC ACID ATOMS : 838
REMARK 3 HETEROGEN ATOMS : 60
REMARK 3 SOLVENT ATOMS : 284
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.21
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.73000
REMARK 3 B22 (A**2) : 0.87000
REMARK 3 B33 (A**2) : -0.15000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.320
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.245
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.197
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 16.720
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6410 ; 0.024 ; 0.018
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8879 ; 2.380 ; 1.866
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 692 ; 7.064 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;35.894 ;22.909
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 830 ;18.424 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;20.793 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 991 ; 0.146 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4520 ; 0.013 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2774 ; 1.868 ; 2.407
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3464 ; 2.972 ; 3.601
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3636 ; 3.219 ; 3.153
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9821 ; 6.703 ;36.189
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 10
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 11 A 79
REMARK 3 ORIGIN FOR THE GROUP (A): -13.9009 -61.6735 23.2855
REMARK 3 T TENSOR
REMARK 3 T11: 0.0138 T22: 0.0479
REMARK 3 T33: 0.1409 T12: 0.0115
REMARK 3 T13: -0.0031 T23: -0.0185
REMARK 3 L TENSOR
REMARK 3 L11: 1.8600 L22: 0.2052
REMARK 3 L33: 1.7240 L12: 0.0918
REMARK 3 L13: 0.3719 L23: 0.1006
REMARK 3 S TENSOR
REMARK 3 S11: -0.0265 S12: -0.0499 S13: 0.0479
REMARK 3 S21: -0.0470 S22: -0.0210 S23: 0.0053
REMARK 3 S31: -0.0533 S32: 0.1148 S33: 0.0475
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1 A 10
REMARK 3 RESIDUE RANGE : A 80 A 170
REMARK 3 ORIGIN FOR THE GROUP (A): -38.5893 -61.6180 28.5402
REMARK 3 T TENSOR
REMARK 3 T11: 0.0076 T22: 0.0338
REMARK 3 T33: 0.2101 T12: -0.0016
REMARK 3 T13: -0.0112 T23: -0.0050
REMARK 3 L TENSOR
REMARK 3 L11: 1.0292 L22: 0.9038
REMARK 3 L33: 1.7373 L12: -0.5126
REMARK 3 L13: 0.0020 L23: 0.7531
REMARK 3 S TENSOR
REMARK 3 S11: 0.0618 S12: 0.0610 S13: -0.2899
REMARK 3 S21: -0.0285 S22: -0.0167 S23: 0.1037
REMARK 3 S31: 0.0060 S32: -0.1185 S33: -0.0451
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 171 A 244
REMARK 3 ORIGIN FOR THE GROUP (A): -37.2280 -39.3595 30.2172
REMARK 3 T TENSOR
REMARK 3 T11: 0.0358 T22: 0.0679
REMARK 3 T33: 0.1107 T12: -0.0004
REMARK 3 T13: -0.0038 T23: -0.0003
REMARK 3 L TENSOR
REMARK 3 L11: 0.5191 L22: 1.6504
REMARK 3 L33: 0.5292 L12: 0.5575
REMARK 3 L13: 0.1396 L23: 0.8650
REMARK 3 S TENSOR
REMARK 3 S11: -0.0186 S12: -0.0638 S13: -0.0585
REMARK 3 S21: 0.0625 S22: 0.0097 S23: 0.0161
REMARK 3 S31: 0.0491 S32: 0.0402 S33: 0.0089
REMARK 3
REMARK 3 TLS GROUP : 4
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 245 A 347
REMARK 3 ORIGIN FOR THE GROUP (A): -22.9892 -44.8100 -0.1975
REMARK 3 T TENSOR
REMARK 3 T11: 0.0239 T22: 0.1126
REMARK 3 T33: 0.0809 T12: -0.0321
REMARK 3 T13: -0.0271 T23: 0.0158
REMARK 3 L TENSOR
REMARK 3 L11: 1.7448 L22: 1.0658
REMARK 3 L33: 1.7227 L12: -0.2375
REMARK 3 L13: 1.0258 L23: -1.1959
REMARK 3 S TENSOR
REMARK 3 S11: 0.0135 S12: 0.2216 S13: 0.0965
REMARK 3 S21: 0.0775 S22: -0.1835 S23: -0.0966
REMARK 3 S31: -0.0653 S32: 0.2388 S33: 0.1700
REMARK 3
REMARK 3 TLS GROUP : 5
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 838 B 849
REMARK 3 RESIDUE RANGE : C 864 C 873
REMARK 3 ORIGIN FOR THE GROUP (A): -27.7412 -40.7986 13.5804
REMARK 3 T TENSOR
REMARK 3 T11: 0.2599 T22: 0.0695
REMARK 3 T33: 0.1781 T12: -0.0057
REMARK 3 T13: -0.0618 T23: 0.0039
REMARK 3 L TENSOR
REMARK 3 L11: 0.7076 L22: 1.3903
REMARK 3 L33: 0.3997 L12: 0.9799
REMARK 3 L13: -0.0523 L23: -0.0594
REMARK 3 S TENSOR
REMARK 3 S11: 0.0107 S12: 0.0025 S13: 0.0792
REMARK 3 S21: 0.0882 S22: -0.0511 S23: 0.1815
REMARK 3 S31: -0.3072 S32: 0.0552 S33: 0.0403
REMARK 3
REMARK 3 TLS GROUP : 6
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : F 11 F 79
REMARK 3 ORIGIN FOR THE GROUP (A): -24.4952 -18.7058 46.5980
REMARK 3 T TENSOR
REMARK 3 T11: 0.0436 T22: 0.1030
REMARK 3 T33: 0.1178 T12: 0.0029
REMARK 3 T13: -0.0049 T23: -0.0519
REMARK 3 L TENSOR
REMARK 3 L11: 1.6222 L22: 0.1580
REMARK 3 L33: 0.5055 L12: 0.3128
REMARK 3 L13: 0.6378 L23: -0.0336
REMARK 3 S TENSOR
REMARK 3 S11: -0.0393 S12: -0.2094 S13: 0.0601
REMARK 3 S21: -0.0646 S22: 0.0105 S23: 0.0151
REMARK 3 S31: 0.0635 S32: -0.1631 S33: 0.0288
REMARK 3
REMARK 3 TLS GROUP : 7
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : F 1 F 10
REMARK 3 RESIDUE RANGE : F 80 F 170
REMARK 3 ORIGIN FOR THE GROUP (A): 0.1834 -23.5427 50.4768
REMARK 3 T TENSOR
REMARK 3 T11: 0.0445 T22: 0.1484
REMARK 3 T33: 0.0911 T12: 0.0110
REMARK 3 T13: -0.0030 T23: -0.0408
REMARK 3 L TENSOR
REMARK 3 L11: 0.6131 L22: 2.6144
REMARK 3 L33: 0.9205 L12: -0.4109
REMARK 3 L13: -0.4513 L23: 0.1321
REMARK 3 S TENSOR
REMARK 3 S11: -0.0467 S12: -0.2077 S13: 0.0652
REMARK 3 S21: -0.1806 S22: 0.0330 S23: -0.1488
REMARK 3 S31: -0.0666 S32: 0.2247 S33: 0.0137
REMARK 3
REMARK 3 TLS GROUP : 8
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : F 171 F 244
REMARK 3 ORIGIN FOR THE GROUP (A): -1.6378 -36.3530 32.5276
REMARK 3 T TENSOR
REMARK 3 T11: 0.0166 T22: 0.0367
REMARK 3 T33: 0.1610 T12: 0.0051
REMARK 3 T13: -0.0260 T23: -0.0164
REMARK 3 L TENSOR
REMARK 3 L11: 0.7066 L22: 1.1255
REMARK 3 L33: 0.6640 L12: -0.0561
REMARK 3 L13: -0.2594 L23: -0.2653
REMARK 3 S TENSOR
REMARK 3 S11: -0.0047 S12: 0.0681 S13: -0.1216
REMARK 3 S21: -0.1297 S22: -0.0308 S23: 0.2695
REMARK 3 S31: 0.0174 S32: 0.0074 S33: 0.0355
REMARK 3
REMARK 3 TLS GROUP : 9
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : F 245 F 347
REMARK 3 ORIGIN FOR THE GROUP (A): -13.4377 -8.0117 20.1702
REMARK 3 T TENSOR
REMARK 3 T11: 0.0653 T22: 0.0477
REMARK 3 T33: 0.0804 T12: 0.0263
REMARK 3 T13: -0.0009 T23: 0.0011
REMARK 3 L TENSOR
REMARK 3 L11: 0.9847 L22: 1.7388
REMARK 3 L33: 2.2118 L12: 1.2014
REMARK 3 L13: -0.6678 L23: -0.5208
REMARK 3 S TENSOR
REMARK 3 S11: -0.0314 S12: 0.1246 S13: 0.0156
REMARK 3 S21: -0.0922 S22: 0.0848 S23: 0.0157
REMARK 3 S31: 0.1251 S32: 0.0020 S33: -0.0534
REMARK 3
REMARK 3 TLS GROUP : 10
REMARK 3 NUMBER OF COMPONENTS GROUP : 2
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : G 838 G 848
REMARK 3 RESIDUE RANGE : H 866 H 873
REMARK 3 ORIGIN FOR THE GROUP (A): -10.2043 -22.2485 26.9812
REMARK 3 T TENSOR
REMARK 3 T11: 0.0861 T22: 0.0519
REMARK 3 T33: 0.1695 T12: -0.0370
REMARK 3 T13: -0.0058 T23: -0.0316
REMARK 3 L TENSOR
REMARK 3 L11: 1.4643 L22: 0.6818
REMARK 3 L33: 1.0681 L12: -0.5575
REMARK 3 L13: 1.1044 L23: -0.0968
REMARK 3 S TENSOR
REMARK 3 S11: 0.0953 S12: 0.0708 S13: -0.0364
REMARK 3 S21: -0.1769 S22: 0.0615 S23: -0.0281
REMARK 3 S31: 0.0389 S32: 0.1570 S33: -0.1569
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6JUL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-APR-19.
REMARK 100 THE DEPOSITION ID IS D_1300011719.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 07-SEP-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : BM14
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.953724
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41973
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300
REMARK 200 RESOLUTION RANGE LOW (A) : 70.173
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 7.100
REMARK 200 R MERGE (I) : 0.15800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 6.80
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.200
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD
REMARK 200 SOFTWARE USED: AUTOSOL
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 46.46
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 2KMME, 0.2M NACL, BIS TRIS
REMARK 280 PROPANE PH 6.0,, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.98000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.26000
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.39000
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.26000
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.98000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.39000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, H, G
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 19350 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 PRO F 348
REMARK 465 ARG F 349
REMARK 465 PRO F 350
REMARK 465 ALA F 351
REMARK 465 VAL F 352
REMARK 465 THR F 353
REMARK 465 ALA F 354
REMARK 465 GLY F 355
REMARK 465 THR F 356
REMARK 465 DT H 856
REMARK 465 DC H 857
REMARK 465 DT H 858
REMARK 465 DG H 859
REMARK 465 DG H 860
REMARK 465 DG H 861
REMARK 465 DG H 862
REMARK 465 DT H 863
REMARK 465 DC H 864
REMARK 465 DC H 865
REMARK 465 DT G 837
REMARK 465 DG G 849
REMARK 465 DG G 850
REMARK 465 DA G 851
REMARK 465 DC G 852
REMARK 465 DC G 853
REMARK 465 DC G 854
REMARK 465 PRO A 348
REMARK 465 ARG A 349
REMARK 465 PRO A 350
REMARK 465 ALA A 351
REMARK 465 VAL A 352
REMARK 465 THR A 353
REMARK 465 ALA A 354
REMARK 465 GLY A 355
REMARK 465 THR A 356
REMARK 465 DT C 856
REMARK 465 DC C 857
REMARK 465 DT C 858
REMARK 465 DG C 859
REMARK 465 DG C 860
REMARK 465 DG C 861
REMARK 465 DG C 862
REMARK 465 DT C 863
REMARK 465 DT B 837
REMARK 465 DG B 850
REMARK 465 DA B 851
REMARK 465 DC B 852
REMARK 465 DC B 853
REMARK 465 DC B 854
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OP1 DG B 849 O HOH B 901 1.01
REMARK 500 O ARG A 300 O HOH A 501 1.98
REMARK 500 O VAL A 186 O HOH A 502 2.18
REMARK 500 O VAL A 292 O HOH A 501 2.19
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 MSE F 1 N MSE F 1 CA 0.164
REMARK 500 TRP A 106 CB TRP A 106 CG -0.112
REMARK 500 DA B 848 P DA B 848 OP2 -0.108
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 MSE F 1 CG - SE - CE ANGL. DEV. = -13.4 DEGREES
REMARK 500 ARG F 26 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES
REMARK 500 GLY F 33 N - CA - C ANGL. DEV. = 18.2 DEGREES
REMARK 500 PRO F 41 C - N - CA ANGL. DEV. = -9.1 DEGREES
REMARK 500 ARG F 42 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES
REMARK 500 ARG F 64 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES
REMARK 500 ARG F 95 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES
REMARK 500 ARG F 129 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES
REMARK 500 ARG F 129 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES
REMARK 500 LEU F 166 CB - CG - CD2 ANGL. DEV. = -10.2 DEGREES
REMARK 500 ARG F 178 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES
REMARK 500 ARG F 178 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES
REMARK 500 ARG F 245 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES
REMARK 500 ARG F 268 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES
REMARK 500 ARG F 287 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES
REMARK 500 ARG F 334 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES
REMARK 500 ARG F 334 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES
REMARK 500 ASP A 9 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES
REMARK 500 LEU A 14 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES
REMARK 500 ASP A 37 CB - CG - OD1 ANGL. DEV. = 7.1 DEGREES
REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES
REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES
REMARK 500 MSE A 61 CG - SE - CE ANGL. DEV. = 14.4 DEGREES
REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES
REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES
REMARK 500 ASP A 107 OD1 - CG - OD2 ANGL. DEV. = -13.6 DEGREES
REMARK 500 ASP A 107 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES
REMARK 500 ASP A 107 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES
REMARK 500 ASP A 120 CB - CG - OD1 ANGL. DEV. = 7.2 DEGREES
REMARK 500 ARG A 129 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES
REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES
REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES
REMARK 500 ARG A 247 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES
REMARK 500 ARG A 247 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES
REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES
REMARK 500 ARG A 293 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES
REMARK 500 DG B 843 O5' - P - OP2 ANGL. DEV. = -5.5 DEGREES
REMARK 500 DA B 848 O5' - P - OP1 ANGL. DEV. = 16.1 DEGREES
REMARK 500 DG B 849 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES
REMARK 500 DG B 849 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 GLN F 12 53.55 39.11
REMARK 500 SER F 35 -15.60 58.36
REMARK 500 SER F 145 -157.81 -161.06
REMARK 500 LEU F 329 -127.72 -117.38
REMARK 500 ASP F 330 -61.65 58.75
REMARK 500 ARG F 331 119.44 -17.21
REMARK 500 ASP F 346 -69.12 84.54
REMARK 500 GLN A 12 60.26 34.11
REMARK 500 ASP A 96 -4.39 -58.76
REMARK 500 ASP A 117 -56.21 96.74
REMARK 500 SER A 145 -157.36 -159.33
REMARK 500 LEU A 329 53.44 -102.88
REMARK 500 ASP A 346 49.72 -95.74
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS
REMARK 500
REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH
REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED
REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND
REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES.
REMARK 500 MODEL OMEGA
REMARK 500 TRP F 106 ASP F 107 -143.50
REMARK 500 ASP F 330 ARG F 331 148.55
REMARK 500 TRP A 106 ASP A 107 -142.23
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 628 DISTANCE = 6.36 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG F 402 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP F 9 OD2
REMARK 620 2 ASP F 107 OD2 65.7
REMARK 620 3 GLU F 108 OE2 93.1 124.5
REMARK 620 4 0KX F 401 O2A 90.9 71.0 164.1
REMARK 620 5 DC H 873 O3' 168.3 114.7 77.1 100.3
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG F 403 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP F 9 OD1
REMARK 620 2 LEU F 10 O 80.2
REMARK 620 3 ASP F 107 OD1 113.7 80.1
REMARK 620 4 ASP F 107 OD2 82.0 116.8 53.8
REMARK 620 5 0KX F 401 O1G 78.8 89.2 161.5 144.3
REMARK 620 6 0KX F 401 O1B 151.8 87.0 88.4 126.2 75.9
REMARK 620 7 0KX F 401 O2A 107.8 169.5 102.1 71.8 85.8 82.8
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 403 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 9 OD1
REMARK 620 2 LEU A 10 O 79.7
REMARK 620 3 ASP A 107 OD1 106.9 83.0
REMARK 620 4 ASP A 107 OD2 77.7 118.6 51.7
REMARK 620 5 0KX A 401 O2G 82.1 91.3 168.1 139.5
REMARK 620 6 0KX A 401 O1B 158.0 85.7 87.4 124.1 81.7
REMARK 620 7 0KX A 401 O2A 104.9 164.9 108.7 76.5 75.4 85.4
REMARK 620 N 1 2 3 4 5 6
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 402 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 ASP A 107 OD2
REMARK 620 2 GLU A 108 OE2 108.8
REMARK 620 3 0KX A 401 O2A 58.1 143.1
REMARK 620 4 HOH A 567 O 116.9 89.3 71.3
REMARK 620 5 DC C 873 O3' 112.0 99.8 117.1 123.9
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 0KX F 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG F 403
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 0KX A 401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403
DBREF 6JUL F 1 356 UNP A0QR77 A0QR77_MYCS2 1 356
DBREF 6JUL H 856 873 PDB 6JUL 6JUL 856 873
DBREF 6JUL G 837 854 PDB 6JUL 6JUL 837 854
DBREF 6JUL A 1 356 UNP A0QR77 A0QR77_MYCS2 1 356
DBREF 6JUL C 856 873 PDB 6JUL 6JUL 856 873
DBREF 6JUL B 837 854 PDB 6JUL 6JUL 837 854
SEQRES 1 F 356 MSE THR LYS TRP VAL LEU HIS VAL ASP LEU ASP GLN PHE
SEQRES 2 F 356 LEU ALA SER VAL GLU LEU ARG ARG ARG PRO ASP LEU ARG
SEQRES 3 F 356 GLY GLN PRO VAL ILE VAL GLY GLY SER GLY ASP PRO SER
SEQRES 4 F 356 GLU PRO ARG LYS VAL VAL THR CYS ALA SER TYR GLU ALA
SEQRES 5 F 356 ARG GLU PHE GLY VAL HIS ALA GLY MSE PRO LEU ARG ALA
SEQRES 6 F 356 ALA ALA ARG ARG CYS PRO ASP ALA THR PHE LEU PRO SER
SEQRES 7 F 356 ASP PRO ALA ALA TYR ASP GLU ALA SER GLU GLN VAL MSE
SEQRES 8 F 356 GLY LEU LEU ARG ASP LEU GLY HIS PRO LEU GLU VAL TRP
SEQRES 9 F 356 GLY TRP ASP GLU ALA TYR LEU GLY ALA ASP LEU PRO ASP
SEQRES 10 F 356 GLU SER ASP PRO VAL GLU VAL ALA GLU ARG ILE ARG THR
SEQRES 11 F 356 VAL VAL ALA ALA GLU THR GLY LEU SER CYS SER VAL GLY
SEQRES 12 F 356 ILE SER ASP ASN LYS GLN ARG ALA LYS VAL ALA THR GLY
SEQRES 13 F 356 PHE ALA LYS PRO ALA GLY ILE TYR VAL LEU THR GLU ALA
SEQRES 14 F 356 ASN TRP MSE THR VAL MSE GLY ASP ARG PRO PRO ASP ALA
SEQRES 15 F 356 LEU TRP GLY VAL GLY PRO LYS THR THR LYS LYS LEU ALA
SEQRES 16 F 356 ALA MSE GLY ILE THR THR VAL ALA ASP LEU ALA VAL THR
SEQRES 17 F 356 ASP PRO SER VAL LEU THR THR ALA PHE GLY PRO SER THR
SEQRES 18 F 356 GLY LEU TRP LEU LEU LEU LEU ALA LYS GLY GLY GLY ASP
SEQRES 19 F 356 THR GLU VAL SER SER GLU PRO TRP VAL PRO ARG SER ARG
SEQRES 20 F 356 SER HIS VAL VAL THR PHE PRO GLN ASP LEU THR GLU ARG
SEQRES 21 F 356 ARG GLU MSE ASP SER ALA VAL ARG ASP LEU ALA LEU GLN
SEQRES 22 F 356 THR LEU ALA GLU ILE VAL GLU GLN GLY ARG ILE VAL THR
SEQRES 23 F 356 ARG VAL ALA VAL THR VAL ARG THR SER THR PHE TYR THR
SEQRES 24 F 356 ARG THR LYS ILE ARG LYS LEU PRO ALA PRO SER THR ASP
SEQRES 25 F 356 ALA GLY GLN ILE VAL ASP THR ALA LEU ALA VAL LEU ASP
SEQRES 26 F 356 GLN PHE GLU LEU ASP ARG PRO VAL ARG LEU LEU GLY VAL
SEQRES 27 F 356 ARG LEU GLU LEU ALA MSE ASP ASP VAL PRO ARG PRO ALA
SEQRES 28 F 356 VAL THR ALA GLY THR
SEQRES 1 H 18 DT DC DT DG DG DG DG DT DC DC DT DA DG
SEQRES 2 H 18 DG DA DC DC DC
SEQRES 1 G 18 DT DC DT DG DG DG DG DT DC DC DT DA DG
SEQRES 2 G 18 DG DA DC DC DC
SEQRES 1 A 356 MSE THR LYS TRP VAL LEU HIS VAL ASP LEU ASP GLN PHE
SEQRES 2 A 356 LEU ALA SER VAL GLU LEU ARG ARG ARG PRO ASP LEU ARG
SEQRES 3 A 356 GLY GLN PRO VAL ILE VAL GLY GLY SER GLY ASP PRO SER
SEQRES 4 A 356 GLU PRO ARG LYS VAL VAL THR CYS ALA SER TYR GLU ALA
SEQRES 5 A 356 ARG GLU PHE GLY VAL HIS ALA GLY MSE PRO LEU ARG ALA
SEQRES 6 A 356 ALA ALA ARG ARG CYS PRO ASP ALA THR PHE LEU PRO SER
SEQRES 7 A 356 ASP PRO ALA ALA TYR ASP GLU ALA SER GLU GLN VAL MSE
SEQRES 8 A 356 GLY LEU LEU ARG ASP LEU GLY HIS PRO LEU GLU VAL TRP
SEQRES 9 A 356 GLY TRP ASP GLU ALA TYR LEU GLY ALA ASP LEU PRO ASP
SEQRES 10 A 356 GLU SER ASP PRO VAL GLU VAL ALA GLU ARG ILE ARG THR
SEQRES 11 A 356 VAL VAL ALA ALA GLU THR GLY LEU SER CYS SER VAL GLY
SEQRES 12 A 356 ILE SER ASP ASN LYS GLN ARG ALA LYS VAL ALA THR GLY
SEQRES 13 A 356 PHE ALA LYS PRO ALA GLY ILE TYR VAL LEU THR GLU ALA
SEQRES 14 A 356 ASN TRP MSE THR VAL MSE GLY ASP ARG PRO PRO ASP ALA
SEQRES 15 A 356 LEU TRP GLY VAL GLY PRO LYS THR THR LYS LYS LEU ALA
SEQRES 16 A 356 ALA MSE GLY ILE THR THR VAL ALA ASP LEU ALA VAL THR
SEQRES 17 A 356 ASP PRO SER VAL LEU THR THR ALA PHE GLY PRO SER THR
SEQRES 18 A 356 GLY LEU TRP LEU LEU LEU LEU ALA LYS GLY GLY GLY ASP
SEQRES 19 A 356 THR GLU VAL SER SER GLU PRO TRP VAL PRO ARG SER ARG
SEQRES 20 A 356 SER HIS VAL VAL THR PHE PRO GLN ASP LEU THR GLU ARG
SEQRES 21 A 356 ARG GLU MSE ASP SER ALA VAL ARG ASP LEU ALA LEU GLN
SEQRES 22 A 356 THR LEU ALA GLU ILE VAL GLU GLN GLY ARG ILE VAL THR
SEQRES 23 A 356 ARG VAL ALA VAL THR VAL ARG THR SER THR PHE TYR THR
SEQRES 24 A 356 ARG THR LYS ILE ARG LYS LEU PRO ALA PRO SER THR ASP
SEQRES 25 A 356 ALA GLY GLN ILE VAL ASP THR ALA LEU ALA VAL LEU ASP
SEQRES 26 A 356 GLN PHE GLU LEU ASP ARG PRO VAL ARG LEU LEU GLY VAL
SEQRES 27 A 356 ARG LEU GLU LEU ALA MSE ASP ASP VAL PRO ARG PRO ALA
SEQRES 28 A 356 VAL THR ALA GLY THR
SEQRES 1 C 18 DT DC DT DG DG DG DG DT DC DC DT DA DG
SEQRES 2 C 18 DG DA DC DC DC
SEQRES 1 B 18 DT DC DT DG DG DG DG DT DC DC DT DA DG
SEQRES 2 B 18 DG DA DC DC DC
MODRES 6JUL MSE F 1 MET MODIFIED RESIDUE
MODRES 6JUL MSE F 61 MET MODIFIED RESIDUE
MODRES 6JUL MSE F 91 MET MODIFIED RESIDUE
MODRES 6JUL MSE F 172 MET MODIFIED RESIDUE
MODRES 6JUL MSE F 175 MET MODIFIED RESIDUE
MODRES 6JUL MSE F 197 MET MODIFIED RESIDUE
MODRES 6JUL MSE F 263 MET MODIFIED RESIDUE
MODRES 6JUL MSE F 344 MET MODIFIED RESIDUE
MODRES 6JUL MSE A 1 MET MODIFIED RESIDUE
MODRES 6JUL MSE A 61 MET MODIFIED RESIDUE
MODRES 6JUL MSE A 91 MET MODIFIED RESIDUE
MODRES 6JUL MSE A 172 MET MODIFIED RESIDUE
MODRES 6JUL MSE A 175 MET MODIFIED RESIDUE
MODRES 6JUL MSE A 197 MET MODIFIED RESIDUE
MODRES 6JUL MSE A 263 MET MODIFIED RESIDUE
MODRES 6JUL MSE A 344 MET MODIFIED RESIDUE
HET MSE F 1 8
HET MSE F 61 8
HET MSE F 91 8
HET MSE F 172 8
HET MSE F 175 8
HET MSE F 197 8
HET MSE F 263 8
HET MSE F 344 8
HET MSE A 1 8
HET MSE A 61 8
HET MSE A 91 8
HET MSE A 172 8
HET MSE A 175 8
HET MSE A 197 8
HET MSE A 263 8
HET MSE A 344 8
HET 0KX F 401 28
HET MG F 402 1
HET MG F 403 1
HET 0KX A 401 28
HET MG A 402 1
HET MG A 403 1
HETNAM MSE SELENOMETHIONINE
HETNAM 0KX 2'-DEOXY-5'-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)
HETNAM 2 0KX PHOSPHORYL]AMINO}PHOSPHORYL]CYTIDINE
HETNAM MG MAGNESIUM ION
FORMUL 1 MSE 16(C5 H11 N O2 SE)
FORMUL 7 0KX 2(C9 H17 N4 O12 P3)
FORMUL 8 MG 4(MG 2+)
FORMUL 13 HOH *284(H2 O)
HELIX 1 AA1 GLN F 12 ARG F 21 1 10
HELIX 2 AA2 ARG F 22 ARG F 26 5 5
HELIX 3 AA3 SER F 49 GLU F 54 1 6
HELIX 4 AA4 PRO F 62 CYS F 70 1 9
HELIX 5 AA5 ASP F 79 ASP F 96 1 18
HELIX 6 AA6 ASP F 120 GLY F 137 1 18
HELIX 7 AA7 ASN F 147 LYS F 159 1 13
HELIX 8 AA8 ASN F 170 GLY F 176 1 7
HELIX 9 AA9 PRO F 179 LEU F 183 5 5
HELIX 10 AB1 GLY F 187 MSE F 197 1 11
HELIX 11 AB2 THR F 201 VAL F 207 1 7
HELIX 12 AB3 ASP F 209 GLY F 218 1 10
HELIX 13 AB4 GLY F 218 LYS F 230 1 13
HELIX 14 AB5 GLU F 259 GLN F 281 1 23
HELIX 15 AB6 ASP F 312 PHE F 327 1 16
HELIX 16 AB7 GLN A 12 ARG A 22 1 11
HELIX 17 AB8 PRO A 23 ARG A 26 5 4
HELIX 18 AB9 GLY A 34 ASP A 37 5 4
HELIX 19 AC1 SER A 49 GLU A 54 1 6
HELIX 20 AC2 PRO A 62 CYS A 70 1 9
HELIX 21 AC3 ASP A 79 ASP A 96 1 18
HELIX 22 AC4 ASP A 120 GLY A 137 1 18
HELIX 23 AC5 ASN A 147 LYS A 159 1 13
HELIX 24 AC6 ASN A 170 GLY A 176 1 7
HELIX 25 AC7 PRO A 179 LEU A 183 5 5
HELIX 26 AC8 GLY A 187 ALA A 196 1 10
HELIX 27 AC9 THR A 201 THR A 208 1 8
HELIX 28 AD1 ASP A 209 GLY A 218 1 10
HELIX 29 AD2 GLY A 218 LYS A 230 1 13
HELIX 30 AD3 GLU A 259 GLN A 281 1 23
HELIX 31 AD4 ASP A 312 GLN A 326 1 15
SHEET 1 AA1 5 LEU F 101 TRP F 104 0
SHEET 2 AA1 5 GLU F 108 LEU F 115 -1 O GLU F 108 N TRP F 104
SHEET 3 AA1 5 THR F 2 LEU F 10 -1 N LEU F 6 O LEU F 111
SHEET 4 AA1 5 CYS F 140 SER F 145 -1 O GLY F 143 N HIS F 7
SHEET 5 AA1 5 ILE F 163 VAL F 165 1 O TYR F 164 N ILE F 144
SHEET 1 AA2 3 CYS F 47 ALA F 48 0
SHEET 2 AA2 3 VAL F 30 VAL F 32 -1 N VAL F 32 O CYS F 47
SHEET 3 AA2 3 THR F 74 LEU F 76 1 O THR F 74 N ILE F 31
SHEET 1 AA3 4 SER F 246 LEU F 257 0
SHEET 2 AA3 4 VAL F 333 LEU F 342 -1 O VAL F 338 N HIS F 249
SHEET 3 AA3 4 VAL F 285 THR F 294 -1 N ALA F 289 O ARG F 339
SHEET 4 AA3 4 THR F 299 SER F 310 -1 O ARG F 304 N VAL F 288
SHEET 1 AA4 5 LEU A 101 TRP A 104 0
SHEET 2 AA4 5 GLU A 108 LEU A 115 -1 O TYR A 110 N GLU A 102
SHEET 3 AA4 5 THR A 2 LEU A 10 -1 N VAL A 8 O ALA A 109
SHEET 4 AA4 5 CYS A 140 SER A 145 -1 O SER A 145 N VAL A 5
SHEET 5 AA4 5 ILE A 163 VAL A 165 1 O TYR A 164 N ILE A 144
SHEET 1 AA5 3 CYS A 47 ALA A 48 0
SHEET 2 AA5 3 VAL A 30 VAL A 32 -1 N VAL A 32 O CYS A 47
SHEET 3 AA5 3 THR A 74 LEU A 76 1 O THR A 74 N ILE A 31
SHEET 1 AA6 4 SER A 246 LEU A 257 0
SHEET 2 AA6 4 VAL A 333 LEU A 342 -1 O LEU A 340 N ARG A 247
SHEET 3 AA6 4 VAL A 285 THR A 294 -1 N ALA A 289 O ARG A 339
SHEET 4 AA6 4 THR A 299 SER A 310 -1 O LYS A 302 N VAL A 290
LINK C MSE F 1 N THR F 2 1555 1555 1.36
LINK C GLY F 60 N MSE F 61 1555 1555 1.34
LINK C MSE F 61 N PRO F 62 1555 1555 1.36
LINK C VAL F 90 N MSE F 91 1555 1555 1.33
LINK C MSE F 91 N GLY F 92 1555 1555 1.35
LINK C TRP F 171 N MSE F 172 1555 1555 1.33
LINK C MSE F 172 N THR F 173 1555 1555 1.33
LINK C VAL F 174 N MSE F 175 1555 1555 1.32
LINK C MSE F 175 N GLY F 176 1555 1555 1.32
LINK C ALA F 196 N MSE F 197 1555 1555 1.32
LINK C MSE F 197 N GLY F 198 1555 1555 1.34
LINK C GLU F 262 N MSE F 263 1555 1555 1.32
LINK C MSE F 263 N ASP F 264 1555 1555 1.35
LINK C ALA F 343 N MSE F 344 1555 1555 1.32
LINK C MSE F 344 N ASP F 345 1555 1555 1.33
LINK C MSE A 1 N THR A 2 1555 1555 1.34
LINK C GLY A 60 N MSE A 61 1555 1555 1.32
LINK C MSE A 61 N PRO A 62 1555 1555 1.33
LINK C VAL A 90 N MSE A 91 1555 1555 1.33
LINK C MSE A 91 N GLY A 92 1555 1555 1.35
LINK C TRP A 171 N MSE A 172 1555 1555 1.32
LINK C MSE A 172 N THR A 173 1555 1555 1.33
LINK C VAL A 174 N MSE A 175 1555 1555 1.33
LINK C MSE A 175 N GLY A 176 1555 1555 1.32
LINK C ALA A 196 N MSE A 197 1555 1555 1.33
LINK C MSE A 197 N GLY A 198 1555 1555 1.35
LINK C GLU A 262 N MSE A 263 1555 1555 1.32
LINK C MSE A 263 N ASP A 264 1555 1555 1.33
LINK C ALA A 343 N MSE A 344 1555 1555 1.33
LINK C MSE A 344 N ASP A 345 1555 1555 1.30
LINK OD2 ASP F 9 MG MG F 402 1555 1555 2.26
LINK OD1 ASP F 9 MG MG F 403 1555 1555 2.18
LINK O LEU F 10 MG MG F 403 1555 1555 2.22
LINK OD2 ASP F 107 MG MG F 402 1555 1555 2.23
LINK OD1 ASP F 107 MG MG F 403 1555 1555 2.26
LINK OD2 ASP F 107 MG MG F 403 1555 1555 2.29
LINK OE2 GLU F 108 MG MG F 402 1555 1555 2.21
LINK O2A 0KX F 401 MG MG F 402 1555 1555 2.27
LINK O1G 0KX F 401 MG MG F 403 1555 1555 2.20
LINK O1B 0KX F 401 MG MG F 403 1555 1555 2.19
LINK O2A 0KX F 401 MG MG F 403 1555 1555 2.16
LINK MG MG F 402 O3' DC H 873 1555 1555 2.22
LINK OD1 ASP A 9 MG MG A 403 1555 1555 2.15
LINK O LEU A 10 MG MG A 403 1555 1555 2.21
LINK OD2 ASP A 107 MG MG A 402 1555 1555 2.75
LINK OD1 ASP A 107 MG MG A 403 1555 1555 2.24
LINK OD2 ASP A 107 MG MG A 403 1555 1555 2.23
LINK OE2 GLU A 108 MG MG A 402 1555 1555 2.31
LINK O2A 0KX A 401 MG MG A 402 1555 1555 2.82
LINK O2G 0KX A 401 MG MG A 403 1555 1555 2.18
LINK O1B 0KX A 401 MG MG A 403 1555 1555 2.22
LINK O2A 0KX A 401 MG MG A 403 1555 1555 2.14
LINK MG MG A 402 O HOH A 567 1555 1555 2.83
LINK MG MG A 402 O3' DC C 873 1555 1555 2.21
CISPEP 1 LYS F 159 PRO F 160 0 -3.23
CISPEP 2 LYS A 159 PRO A 160 0 1.60
SITE 1 AC1 19 ASP F 9 LEU F 10 ASP F 11 GLN F 12
SITE 2 AC1 19 PHE F 13 LEU F 14 THR F 46 CYS F 47
SITE 3 AC1 19 TYR F 50 ARG F 53 ALA F 59 ASP F 107
SITE 4 AC1 19 LYS F 159 MG F 402 MG F 403 HOH F 546
SITE 5 AC1 19 HOH F 575 DG G 840 DC H 873
SITE 1 AC2 6 ASP F 9 ASP F 107 GLU F 108 0KX F 401
SITE 2 AC2 6 MG F 403 DC H 873
SITE 1 AC3 5 ASP F 9 LEU F 10 ASP F 107 0KX F 401
SITE 2 AC3 5 MG F 402
SITE 1 AC4 20 ASP A 9 LEU A 10 ASP A 11 GLN A 12
SITE 2 AC4 20 PHE A 13 LEU A 14 THR A 46 CYS A 47
SITE 3 AC4 20 TYR A 50 ARG A 53 ASP A 107 LYS A 159
SITE 4 AC4 20 MG A 402 MG A 403 HOH A 566 HOH A 567
SITE 5 AC4 20 HOH A 580 DG B 840 DG B 841 DC C 873
SITE 1 AC5 6 ASP A 9 ASP A 107 GLU A 108 0KX A 401
SITE 2 AC5 6 HOH A 567 DC C 873
SITE 1 AC6 4 ASP A 9 LEU A 10 ASP A 107 0KX A 401
CRYST1 53.960 80.780 210.520 90.00 90.00 90.00 P 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.018532 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012379 0.000000 0.00000
SCALE3 0.000000 0.000000 0.004750 0.00000
HETATM 1 N MSE F 1 18.676 -32.542 51.953 1.00 53.41 N
ANISOU 1 N MSE F 1 4295 7975 8021 766 453 -79 N
HETATM 2 CA MSE F 1 17.468 -31.492 51.686 1.00 55.07 C
ANISOU 2 CA MSE F 1 4693 8137 8093 645 444 -131 C
HETATM 3 C MSE F 1 16.434 -31.919 50.624 1.00 51.04 C
ANISOU 3 C MSE F 1 4432 7509 7451 635 590 -81 C
HETATM 4 O MSE F 1 16.804 -32.728 49.795 1.00 53.17 O
ANISOU 4 O MSE F 1 4733 7705 7763 682 745 -22 O
HETATM 5 CB MSE F 1 17.958 -29.998 51.451 1.00 59.66 C
ANISOU 5 CB MSE F 1 5172 8692 8802 508 454 -224 C
HETATM 6 CG MSE F 1 17.499 -29.328 50.087 1.00 64.82 C
ANISOU 6 CG MSE F 1 5991 9198 9440 404 643 -231 C
HETATM 7 SE MSE F 1 19.003 -29.072 48.766 1.00 93.99 SE
ANISOU 7 SE MSE F 1 9545 12765 13399 353 910 -228 SE
HETATM 8 CE MSE F 1 17.559 -29.091 47.358 1.00 73.93 C
ANISOU 8 CE MSE F 1 7390 10063 10635 318 1070 -183 C