HEADER REPLICATION/DNA 15-APR-19 6JUQ TITLE MUTANT POLIV-DNA INCOMING NUCLEOTIDE COMPLEX 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: F; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(P*CP*TP*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'); COMPND 11 CHAIN: G, B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(P*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)-3'); COMPND 15 CHAIN: H; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA POLYMERASE IV; COMPND 19 CHAIN: A; COMPND 20 SYNONYM: POL IV; COMPND 21 EC: 2.7.7.7; COMPND 22 ENGINEERED: YES; COMPND 23 MUTATION: YES; COMPND 24 MOL_ID: 5; COMPND 25 MOLECULE: DNA (5'-D(P*GP*GP*GP*GP*TP*CP*CP*TP*AP*GP*GP*AP*CP*CP*C)- COMPND 26 3'); COMPND 27 CHAIN: C; COMPND 28 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: DINB, DBH, DINB_1, DINB_2, A8C65_11955, A9R57_12995, SOURCE 5 ACU57_05495, AML35_26730, AUQ13_19210, BANRA_02184, BANRA_03427, SOURCE 6 BET08_31995, BHS87_01175, BJJ90_21040, BMT91_15875, BUE81_28425, SOURCE 7 C5N07_13800, C9E25_22940, CA593_02435, CRM83_14635, CV83915_01335, SOURCE 8 CWS33_23695, D0X26_15110, D2185_22400, D3O91_23685, D3Y67_06560, SOURCE 9 D9D20_20085, D9D69_23735, D9E22_12045, D9F57_19765, D9H66_20200, SOURCE 10 D9H68_19465, D9I18_13635, D9J11_18290, D9J11_27145, D9J44_21795, SOURCE 11 DNQ41_05075, DTL43_23485, EAI44_14085, EAI52_15440, EC1094V2_3597, SOURCE 12 EC3234A_186C00130, EC3426_01008, EC382_20155, EC382_27145, SOURCE 13 ECTO6_03825, EEP23_17825, EFV02_01800, EFV04_12320, EFV12_23405, SOURCE 14 EFV17_17010, ERS085365_04420, ERS139211_04423, ERS150873_03537, SOURCE 15 HW43_04975, NCTC10865_04963, NCTC11022_04998, NCTC11126_03759, SOURCE 16 NCTC13148_06847, NCTC13462_02133, NCTC8985_02971, NCTC9037_04075, SOURCE 17 NCTC9045_04586, NCTC9058_02901, NCTC9062_04328, NCTC9073_03243, SOURCE 18 NCTC9117_04957, NCTC9706_01202, RK56_027425, SAMEA3472043_03017, SOURCE 19 SAMEA3472047_03125, SAMEA3472070_01946, SAMEA3484427_04943, SOURCE 20 SAMEA3484429_04916, SAMEA3752557_00095, SAMEA3752559_04620, SOURCE 21 SAMEA3753300_00345, SK85_00262, WQ89_22460, WR15_21380; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 MOL_ID: 2; SOURCE 25 SYNTHETIC: YES; SOURCE 26 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 27 ORGANISM_TAXID: 562; SOURCE 28 MOL_ID: 3; SOURCE 29 SYNTHETIC: YES; SOURCE 30 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 31 ORGANISM_TAXID: 562; SOURCE 32 MOL_ID: 4; SOURCE 33 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 34 ORGANISM_TAXID: 562; SOURCE 35 GENE: DINB, DBH, DINB_1, DINB_2, A8C65_11955, A9R57_12995, SOURCE 36 ACU57_05495, AML35_26730, AUQ13_19210, BANRA_02184, BANRA_03427, SOURCE 37 BET08_31995, BHS87_01175, BJJ90_21040, BMT91_15875, BUE81_28425, SOURCE 38 C5N07_13800, C9E25_22940, CA593_02435, CRM83_14635, CV83915_01335, SOURCE 39 CWS33_23695, D0X26_15110, D2185_22400, D3O91_23685, D3Y67_06560, SOURCE 40 D9D20_20085, D9D69_23735, D9E22_12045, D9F57_19765, D9H66_20200, SOURCE 41 D9H68_19465, D9I18_13635, D9J11_18290, D9J11_27145, D9J44_21795, SOURCE 42 DNQ41_05075, DTL43_23485, EAI44_14085, EAI52_15440, EC1094V2_3597, SOURCE 43 EC3234A_186C00130, EC3426_01008, EC382_20155, EC382_27145, SOURCE 44 ECTO6_03825, EEP23_17825, EFV02_01800, EFV04_12320, EFV12_23405, SOURCE 45 EFV17_17010, ERS085365_04420, ERS139211_04423, ERS150873_03537, SOURCE 46 HW43_04975, NCTC10865_04963, NCTC11022_04998, NCTC11126_03759, SOURCE 47 NCTC13148_06847, NCTC13462_02133, NCTC8985_02971, NCTC9037_04075, SOURCE 48 NCTC9045_04586, NCTC9058_02901, NCTC9062_04328, NCTC9073_03243, SOURCE 49 NCTC9117_04957, NCTC9706_01202, RK56_027425, SAMEA3472043_03017, SOURCE 50 SAMEA3472047_03125, SAMEA3472070_01946, SAMEA3484427_04943, SOURCE 51 SAMEA3484429_04916, SAMEA3752557_00095, SAMEA3752559_04620, SOURCE 52 SAMEA3753300_00345, SK85_00262, WQ89_22460, WR15_21380; SOURCE 53 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 54 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 55 MOL_ID: 5; SOURCE 56 SYNTHETIC: YES; SOURCE 57 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 58 ORGANISM_TAXID: 562 KEYWDS DNA POLYMERASE, REPLICATION, REPLICATION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.T.NAIR,M.K.JOHNSON REVDAT 3 22-NOV-23 6JUQ 1 LINK REVDAT 2 26-FEB-20 6JUQ 1 REMARK LINK REVDAT 1 19-FEB-20 6JUQ 0 JRNL AUTH M.K.JOHNSON,J.KOTTUR,D.T.NAIR JRNL TITL A POLAR FILTER IN DNA POLYMERASES PREVENTS RIBONUCLEOTIDE JRNL TITL 2 INCORPORATION. JRNL REF NUCLEIC ACIDS RES. V. 47 10693 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31544946 JRNL DOI 10.1093/NAR/GKZ792 REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 26497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1380 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.77 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1921 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.07 REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5374 REMARK 3 NUCLEIC ACID ATOMS : 1292 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.41000 REMARK 3 B22 (A**2) : -2.57000 REMARK 3 B33 (A**2) : 6.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.384 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.482 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6980 ; 0.019 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9686 ; 1.665 ; 1.797 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 681 ; 6.737 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;34.038 ;22.459 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 980 ;20.580 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;18.493 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1027 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4782 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2730 ; 4.557 ; 5.518 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3409 ; 7.228 ; 8.276 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4250 ; 5.412 ; 5.853 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 29145 ;14.138 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7357 35.8776 -39.7117 REMARK 3 T TENSOR REMARK 3 T11: 1.0365 T22: 0.7703 REMARK 3 T33: 0.3771 T12: -0.0075 REMARK 3 T13: 0.0642 T23: 0.0970 REMARK 3 L TENSOR REMARK 3 L11: 6.6035 L22: 1.7915 REMARK 3 L33: 0.5170 L12: -3.3616 REMARK 3 L13: 1.6686 L23: -0.8420 REMARK 3 S TENSOR REMARK 3 S11: 0.6056 S12: 0.9831 S13: -0.3473 REMARK 3 S21: -0.3233 S22: -0.3753 S23: 0.0701 REMARK 3 S31: 0.0498 S32: 0.0712 S33: -0.2303 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 RESIDUE RANGE : A 75 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6262 19.2530 -57.9320 REMARK 3 T TENSOR REMARK 3 T11: 0.8236 T22: 0.4368 REMARK 3 T33: 0.1109 T12: -0.1772 REMARK 3 T13: -0.1245 T23: 0.1296 REMARK 3 L TENSOR REMARK 3 L11: 3.8941 L22: 3.0930 REMARK 3 L33: 3.6598 L12: -0.5114 REMARK 3 L13: -1.0070 L23: 1.7450 REMARK 3 S TENSOR REMARK 3 S11: 0.2264 S12: 0.1194 S13: -0.2829 REMARK 3 S21: -0.2345 S22: 0.1178 S23: 0.1144 REMARK 3 S31: 0.2734 S32: -0.7164 S33: -0.3442 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 244 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9134 15.7092 -50.2506 REMARK 3 T TENSOR REMARK 3 T11: 1.0464 T22: 0.2907 REMARK 3 T33: 0.3943 T12: -0.1426 REMARK 3 T13: 0.0565 T23: -0.1640 REMARK 3 L TENSOR REMARK 3 L11: 0.9797 L22: 0.4524 REMARK 3 L33: 0.6437 L12: -0.6143 REMARK 3 L13: -0.2336 L23: 0.1529 REMARK 3 S TENSOR REMARK 3 S11: 0.0475 S12: 0.1227 S13: 0.2591 REMARK 3 S21: -0.1790 S22: 0.0310 S23: -0.2761 REMARK 3 S31: 0.4413 S32: -0.0052 S33: -0.0785 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 245 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3481 11.6118 -22.1211 REMARK 3 T TENSOR REMARK 3 T11: 0.6603 T22: 0.3580 REMARK 3 T33: 0.4446 T12: -0.1578 REMARK 3 T13: -0.0474 T23: 0.0574 REMARK 3 L TENSOR REMARK 3 L11: 1.7152 L22: 1.2752 REMARK 3 L33: 4.6256 L12: 0.3974 REMARK 3 L13: 0.2612 L23: 0.3446 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: -0.1725 S13: 0.0099 REMARK 3 S21: -0.1806 S22: 0.0394 S23: -0.0381 REMARK 3 S31: 0.3877 S32: -0.1975 S33: 0.0423 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 838 B 854 REMARK 3 RESIDUE RANGE : C 859 C 873 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2903 7.2282 -32.1017 REMARK 3 T TENSOR REMARK 3 T11: 0.8652 T22: 0.1395 REMARK 3 T33: 0.6302 T12: -0.0754 REMARK 3 T13: 0.0111 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 0.7259 L22: 3.0949 REMARK 3 L33: 1.8498 L12: -0.8935 REMARK 3 L13: -0.6660 L23: -0.7195 REMARK 3 S TENSOR REMARK 3 S11: -0.1927 S12: 0.0228 S13: 0.0038 REMARK 3 S21: -0.0381 S22: -0.0769 S23: -0.2104 REMARK 3 S31: 0.3549 S32: -0.0476 S33: 0.2696 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 12 F 79 REMARK 3 ORIGIN FOR THE GROUP (A): 17.1499 29.3280 14.9750 REMARK 3 T TENSOR REMARK 3 T11: 0.6570 T22: 0.3272 REMARK 3 T33: 1.2093 T12: -0.0157 REMARK 3 T13: 0.0063 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.2838 L22: 1.3003 REMARK 3 L33: 0.2760 L12: 0.5971 REMARK 3 L13: 0.1086 L23: 0.2858 REMARK 3 S TENSOR REMARK 3 S11: -0.0046 S12: -0.1258 S13: 0.0772 REMARK 3 S21: 0.1743 S22: -0.3120 S23: 0.0826 REMARK 3 S31: 0.2965 S32: -0.1402 S33: 0.3166 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 0 F 11 REMARK 3 RESIDUE RANGE : F 80 F 166 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3847 12.6769 14.7524 REMARK 3 T TENSOR REMARK 3 T11: 0.4465 T22: 0.2374 REMARK 3 T33: 0.9314 T12: 0.0241 REMARK 3 T13: 0.1149 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 1.5205 L22: 1.9290 REMARK 3 L33: 1.5976 L12: 0.0067 REMARK 3 L13: -0.0734 L23: -0.4554 REMARK 3 S TENSOR REMARK 3 S11: -0.1119 S12: -0.0388 S13: 0.0400 REMARK 3 S21: 0.3128 S22: -0.0827 S23: 0.5065 REMARK 3 S31: 0.0308 S32: 0.0267 S33: 0.1946 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 167 F 230 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5411 11.9645 -10.4842 REMARK 3 T TENSOR REMARK 3 T11: 0.4937 T22: 0.3408 REMARK 3 T33: 0.7232 T12: -0.0386 REMARK 3 T13: -0.0564 T23: 0.0835 REMARK 3 L TENSOR REMARK 3 L11: 4.3382 L22: 2.3917 REMARK 3 L33: 0.9776 L12: 0.8598 REMARK 3 L13: -1.1381 L23: 0.0839 REMARK 3 S TENSOR REMARK 3 S11: -0.1365 S12: 0.0343 S13: 0.0839 REMARK 3 S21: -0.3614 S22: -0.0030 S23: 0.0587 REMARK 3 S31: 0.0425 S32: 0.1916 S33: 0.1395 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 231 F 341 REMARK 3 ORIGIN FOR THE GROUP (A): 34.4587 7.0365 9.3117 REMARK 3 T TENSOR REMARK 3 T11: 0.5446 T22: 0.5466 REMARK 3 T33: 0.6671 T12: 0.1036 REMARK 3 T13: 0.0260 T23: 0.0902 REMARK 3 L TENSOR REMARK 3 L11: 3.1514 L22: 1.6885 REMARK 3 L33: 0.9427 L12: 1.1103 REMARK 3 L13: -0.1497 L23: -0.8717 REMARK 3 S TENSOR REMARK 3 S11: -0.1279 S12: 0.3229 S13: 0.2805 REMARK 3 S21: 0.2474 S22: 0.1682 S23: 0.1619 REMARK 3 S31: 0.2075 S32: 0.2593 S33: -0.0403 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 838 G 854 REMARK 3 RESIDUE RANGE : H 860 H 873 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9489 1.9825 -2.0806 REMARK 3 T TENSOR REMARK 3 T11: 0.5283 T22: 0.3873 REMARK 3 T33: 0.6981 T12: -0.0087 REMARK 3 T13: 0.0121 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 2.7931 L22: 1.4625 REMARK 3 L33: 0.2444 L12: -0.9160 REMARK 3 L13: -0.0547 L23: 0.5314 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: 0.3635 S13: -0.1684 REMARK 3 S21: 0.0778 S22: -0.0130 S23: 0.0998 REMARK 3 S31: -0.0491 S32: 0.0100 S33: 0.0114 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4-5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28806 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 86.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IRC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MDP 1%, PHOSPHATE BUFFER PH 4.7, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.62200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLN A 227 N ILE A 229 1.61 REMARK 500 NH2 ARG A 225 OD2 ASP A 230 1.84 REMARK 500 OD2 ASP A 8 OE1 GLU A 104 1.86 REMARK 500 NZ LYS F 64 OP2 DC G 838 1.87 REMARK 500 NZ LYS A 150 OP1 DC C 873 2.10 REMARK 500 N4 DC B 853 O6 DG C 861 2.12 REMARK 500 N CYS F 11 O2G 2TM F 401 2.17 REMARK 500 OE1 GLU F 104 O HOH F 501 2.17 REMARK 500 OG SER A 139 O LYS A 157 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CZ ARG F 265 OP2 DC B 853 2655 1.10 REMARK 500 NH2 ARG F 265 OP2 DC B 853 2655 1.24 REMARK 500 NH2 ARG F 265 O5' DC B 853 2655 1.56 REMARK 500 NH2 ARG F 265 P DC B 853 2655 1.62 REMARK 500 NE ARG F 265 OP2 DC B 853 2655 1.81 REMARK 500 NH1 ARG F 265 OP2 DC B 853 2655 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 224 N GLU A 224 CA -0.147 REMARK 500 GLU A 224 CA GLU A 224 C -0.174 REMARK 500 ARG A 225 CA ARG A 225 C -0.182 REMARK 500 ARG A 225 C ARG A 225 O -0.115 REMARK 500 DA B 851 O3' DC B 852 P -0.112 REMARK 500 DC B 852 O3' DC B 853 P -0.095 REMARK 500 DC B 853 O3' DC B 854 P -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP F 103 OD1 - CG - OD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 ASP F 103 CB - CG - OD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 DT G 839 O4' - C4' - C3' ANGL. DEV. = -2.4 DEGREES REMARK 500 DG G 840 O5' - P - OP2 ANGL. DEV. = 7.7 DEGREES REMARK 500 DG G 842 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DG G 843 O5' - P - OP2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ASP A 8 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ASP A 103 OD1 - CG - OD2 ANGL. DEV. = -13.8 DEGREES REMARK 500 ASP A 103 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 GLU A 224 N - CA - CB ANGL. DEV. = -12.3 DEGREES REMARK 500 SER A 226 CB - CA - C ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG A 232 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC B 852 O5' - P - OP2 ANGL. DEV. = -7.1 DEGREES REMARK 500 DC B 853 C1' - O4' - C4' ANGL. DEV. = -10.8 DEGREES REMARK 500 DG C 860 O5' - P - OP1 ANGL. DEV. = 8.3 DEGREES REMARK 500 DG C 861 C3' - C2' - C1' ANGL. DEV. = -5.2 DEGREES REMARK 500 DG C 861 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG C 868 O5' - P - OP2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS F 11 78.12 23.69 REMARK 500 CYS F 66 84.08 -151.70 REMARK 500 SER F 101 -161.30 53.62 REMARK 500 ASP F 111 63.31 -110.07 REMARK 500 CYS F 115 57.50 -116.95 REMARK 500 LYS F 157 -91.55 63.09 REMARK 500 GLU F 193 -38.71 153.57 REMARK 500 SER F 242 148.57 -176.08 REMARK 500 ALA F 250 -76.21 -39.10 REMARK 500 PHE F 295 -8.09 62.61 REMARK 500 LEU F 307 108.63 -42.57 REMARK 500 CYS A 11 61.91 31.29 REMARK 500 CYS A 66 88.01 -156.76 REMARK 500 HIS A 68 20.16 -75.40 REMARK 500 ARG A 96 86.76 -66.30 REMARK 500 SER A 101 -144.83 -157.50 REMARK 500 ASP A 111 66.14 -105.46 REMARK 500 GLU A 133 -50.78 61.92 REMARK 500 THR A 175 60.47 -101.79 REMARK 500 SER A 236 -13.00 79.94 REMARK 500 GLU A 237 14.95 -140.53 REMARK 500 PHE A 295 -3.08 76.39 REMARK 500 LEU A 307 97.07 -56.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD1 REMARK 620 2 MET F 9 O 88.2 REMARK 620 3 ASP F 103 OD2 108.5 103.4 REMARK 620 4 2TM F 401 O1G 78.1 108.4 147.7 REMARK 620 5 2TM F 401 O1B 159.6 89.2 91.8 83.5 REMARK 620 6 2TM F 401 O1A 106.3 165.0 75.8 72.0 75.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN F 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 8 OD2 REMARK 620 2 ASP F 103 OD1 125.4 REMARK 620 3 ASP F 103 OD2 92.6 58.7 REMARK 620 4 GLU F 104 OE1 79.1 122.4 170.3 REMARK 620 5 2TM F 401 O1A 85.8 118.2 69.5 114.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD1 REMARK 620 2 MET A 9 O 78.1 REMARK 620 3 ASP A 103 OD2 90.4 95.3 REMARK 620 4 2TM A 401 O1G 91.6 106.9 157.6 REMARK 620 5 2TM A 401 O1B 159.8 96.1 109.5 71.5 REMARK 620 6 2TM A 401 O1A 111.2 170.8 84.4 74.2 75.5 REMARK 620 7 MN A 403 MN 77.5 132.9 45.6 113.4 118.8 51.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 ASP A 103 OD1 137.2 REMARK 620 3 ASP A 103 OD2 104.6 59.2 REMARK 620 4 GLU A 104 OE1 52.3 120.0 148.5 REMARK 620 5 2TM A 401 O1A 99.1 114.7 80.4 120.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2TM F 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN F 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN F 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2TM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 403 DBREF 6JUQ F 2 341 UNP W8STT9 W8STT9_ECOLX 2 341 DBREF 6JUQ G 838 854 PDB 6JUQ 6JUQ 838 854 DBREF 6JUQ H 860 873 PDB 6JUQ 6JUQ 860 873 DBREF 6JUQ A 2 341 UNP W8STT9 W8STT9_ECOLX 2 341 DBREF 6JUQ B 838 854 PDB 6JUQ 6JUQ 838 854 DBREF 6JUQ C 859 873 PDB 6JUQ 6JUQ 859 873 SEQADV 6JUQ GLY F 0 UNP W8STT9 EXPRESSION TAG SEQADV 6JUQ SER F 1 UNP W8STT9 EXPRESSION TAG SEQADV 6JUQ ALA F 13 UNP W8STT9 PHE 13 ENGINEERED MUTATION SEQADV 6JUQ CYS F 43 UNP W8STT9 THR 43 ENGINEERED MUTATION SEQADV 6JUQ SER A 1 UNP W8STT9 EXPRESSION TAG SEQADV 6JUQ ALA A 13 UNP W8STT9 PHE 13 ENGINEERED MUTATION SEQADV 6JUQ CYS A 43 UNP W8STT9 THR 43 ENGINEERED MUTATION SEQRES 1 F 342 GLY SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE SEQRES 2 F 342 ALA ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG SEQRES 3 F 342 ASP ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG SEQRES 4 F 342 GLY VAL ILE SER CYS ALA ASN TYR PRO ALA ARG LYS PHE SEQRES 5 F 342 GLY VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS SEQRES 6 F 342 LEU CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP SEQRES 7 F 342 ALA TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SEQRES 8 F 342 SER ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP SEQRES 9 F 342 GLU ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS SEQRES 10 F 342 GLY SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR SEQRES 11 F 342 ILE PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL SEQRES 12 F 342 ALA PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET SEQRES 13 F 342 ASN LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU SEQRES 14 F 342 VAL PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE SEQRES 15 F 342 PRO GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA SEQRES 16 F 342 MET GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP SEQRES 17 F 342 LEU VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG SEQRES 18 F 342 ILE LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP SEQRES 19 F 342 VAL ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU SEQRES 20 F 342 ARG THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS SEQRES 21 F 342 GLU ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG SEQRES 22 F 342 ARG LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG SEQRES 23 F 342 GLN GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR SEQRES 24 F 342 THR GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP SEQRES 25 F 342 LEU ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG SEQRES 26 F 342 GLY GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR SEQRES 27 F 342 LEU LEU ASP PRO SEQRES 1 G 17 DC DT DG DG DG DG DT DC DC DT DA DG DG SEQRES 2 G 17 DA DC DC DC SEQRES 1 H 14 DG DG DG DT DC DC DT DA DG DG DA DC DC SEQRES 2 H 14 DC SEQRES 1 A 341 SER ARG LYS ILE ILE HIS VAL ASP MET ASP CYS PHE ALA SEQRES 2 A 341 ALA ALA VAL GLU MET ARG ASP ASN PRO ALA LEU ARG ASP SEQRES 3 A 341 ILE PRO ILE ALA ILE GLY GLY SER ARG GLU ARG ARG GLY SEQRES 4 A 341 VAL ILE SER CYS ALA ASN TYR PRO ALA ARG LYS PHE GLY SEQRES 5 A 341 VAL ARG SER ALA MET PRO THR GLY MET ALA LEU LYS LEU SEQRES 6 A 341 CYS PRO HIS LEU THR LEU LEU PRO GLY ARG PHE ASP ALA SEQRES 7 A 341 TYR LYS GLU ALA SER ASN HIS ILE ARG GLU ILE PHE SER SEQRES 8 A 341 ARG TYR THR SER ARG ILE GLU PRO LEU SER LEU ASP GLU SEQRES 9 A 341 ALA TYR LEU ASP VAL THR ASP SER VAL HIS CYS HIS GLY SEQRES 10 A 341 SER ALA THR LEU ILE ALA GLN GLU ILE ARG GLN THR ILE SEQRES 11 A 341 PHE ASN GLU LEU GLN LEU THR ALA SER ALA GLY VAL ALA SEQRES 12 A 341 PRO VAL LYS PHE LEU ALA LYS ILE ALA SER ASP MET ASN SEQRES 13 A 341 LYS PRO ASN GLY GLN PHE VAL ILE THR PRO ALA GLU VAL SEQRES 14 A 341 PRO ALA PHE LEU GLN THR LEU PRO LEU ALA LYS ILE PRO SEQRES 15 A 341 GLY VAL GLY LYS VAL SER ALA ALA LYS LEU GLU ALA MET SEQRES 16 A 341 GLY LEU ARG THR CYS GLY ASP VAL GLN LYS CYS ASP LEU SEQRES 17 A 341 VAL MET LEU LEU LYS ARG PHE GLY LYS PHE GLY ARG ILE SEQRES 18 A 341 LEU TRP GLU ARG SER GLN GLY ILE ASP GLU ARG ASP VAL SEQRES 19 A 341 ASN SER GLU ARG LEU ARG LYS SER VAL GLY VAL GLU ARG SEQRES 20 A 341 THR MET ALA GLU ASP ILE HIS HIS TRP SER GLU CYS GLU SEQRES 21 A 341 ALA ILE ILE GLU ARG LEU TYR PRO GLU LEU GLU ARG ARG SEQRES 22 A 341 LEU ALA LYS VAL LYS PRO ASP LEU LEU ILE ALA ARG GLN SEQRES 23 A 341 GLY VAL LYS LEU LYS PHE ASP ASP PHE GLN GLN THR THR SEQRES 24 A 341 GLN GLU HIS VAL TRP PRO ARG LEU ASN LYS ALA ASP LEU SEQRES 25 A 341 ILE ALA THR ALA ARG LYS THR TRP ASP GLU ARG ARG GLY SEQRES 26 A 341 GLY ARG GLY VAL ARG LEU VAL GLY LEU HIS VAL THR LEU SEQRES 27 A 341 LEU ASP PRO SEQRES 1 B 17 DC DT DG DG DG DG DT DC DC DT DA DG DG SEQRES 2 B 17 DA DC DC DC SEQRES 1 C 15 DG DG DG DG DT DC DC DT DA DG DG DA DC SEQRES 2 C 15 DC DC HET 2TM F 401 29 HET MN F 402 1 HET MN F 403 1 HET 2TM A 401 29 HET MN A 402 1 HET MN A 403 1 HETNAM 2TM 5'-O-[(S)-HYDROXY{[(S)-HYDROXY(PHOSPHONOOXY) HETNAM 2 2TM PHOSPHORYL]METHYL}PHOSPHORYL]CYTIDINE HETNAM MN MANGANESE (II) ION HETSYN 2TM CMPCPP FORMUL 7 2TM 2(C10 H18 N3 O13 P3) FORMUL 8 MN 4(MN 2+) FORMUL 13 HOH *14(H2 O) HELIX 1 AA1 CYS F 11 ASN F 21 1 11 HELIX 2 AA2 PRO F 22 ARG F 25 5 4 HELIX 3 AA3 SER F 34 ARG F 38 5 5 HELIX 4 AA4 ASN F 45 LYS F 50 1 6 HELIX 5 AA5 PRO F 58 LEU F 63 1 6 HELIX 6 AA6 ARG F 75 ARG F 92 1 18 HELIX 7 AA7 SER F 118 GLN F 135 1 18 HELIX 8 AA8 VAL F 145 ASN F 156 1 12 HELIX 9 AA9 GLU F 168 LEU F 176 1 9 HELIX 10 AB1 PRO F 177 ILE F 181 5 5 HELIX 11 AB2 GLY F 185 LEU F 192 1 8 HELIX 12 AB3 THR F 199 LYS F 205 1 7 HELIX 13 AB4 ASP F 207 PHE F 215 1 9 HELIX 14 AB5 GLY F 216 GLN F 227 1 12 HELIX 15 AB6 HIS F 255 LYS F 276 1 22 HELIX 16 AB7 ASN F 308 ARG F 323 1 16 HELIX 17 AB8 CYS A 11 ASN A 21 1 11 HELIX 18 AB9 PRO A 22 ARG A 25 5 4 HELIX 19 AC1 ASN A 45 LYS A 50 1 6 HELIX 20 AC2 THR A 59 CYS A 66 1 8 HELIX 21 AC3 ARG A 75 SER A 91 1 17 HELIX 22 AC4 SER A 118 GLN A 135 1 18 HELIX 23 AC5 VAL A 145 ASP A 154 1 10 HELIX 24 AC6 ALA A 167 THR A 175 1 9 HELIX 25 AC7 LEU A 176 ILE A 181 5 6 HELIX 26 AC8 GLY A 185 MET A 195 1 11 HELIX 27 AC9 GLY A 201 CYS A 206 1 6 HELIX 28 AD1 LEU A 208 GLY A 216 1 9 HELIX 29 AD2 GLY A 216 SER A 226 1 11 HELIX 30 AD3 HIS A 255 LYS A 276 1 22 HELIX 31 AD4 ASN A 308 ARG A 323 1 16 SHEET 1 AA1 5 ILE F 97 LEU F 100 0 SHEET 2 AA1 5 GLU F 104 ASP F 108 -1 O TYR F 106 N GLU F 98 SHEET 3 AA1 5 ILE F 4 MET F 9 -1 N ILE F 5 O LEU F 107 SHEET 4 AA1 5 ALA F 138 ALA F 143 -1 O SER F 139 N ASP F 8 SHEET 5 AA1 5 GLN F 161 VAL F 163 1 O PHE F 162 N VAL F 142 SHEET 1 AA2 3 ILE F 41 ALA F 44 0 SHEET 2 AA2 3 ILE F 29 GLY F 32 -1 N ILE F 31 O SER F 42 SHEET 3 AA2 3 THR F 70 LEU F 72 1 O LEU F 72 N ALA F 30 SHEET 1 AA3 4 SER F 242 ILE F 253 0 SHEET 2 AA3 4 VAL F 329 THR F 337 -1 O LEU F 334 N VAL F 245 SHEET 3 AA3 4 ARG F 285 PHE F 292 -1 N GLY F 287 O HIS F 335 SHEET 4 AA3 4 GLN F 297 VAL F 303 -1 O GLN F 300 N VAL F 288 SHEET 1 AA4 5 ILE A 97 PRO A 99 0 SHEET 2 AA4 5 GLU A 104 ASP A 108 -1 O TYR A 106 N GLU A 98 SHEET 3 AA4 5 ILE A 4 MET A 9 -1 N ILE A 5 O LEU A 107 SHEET 4 AA4 5 ALA A 138 ALA A 143 -1 O GLY A 141 N HIS A 6 SHEET 5 AA4 5 GLN A 161 VAL A 163 1 O PHE A 162 N VAL A 142 SHEET 1 AA5 4 MET A 57 PRO A 58 0 SHEET 2 AA5 4 VAL A 40 ALA A 44 -1 N ILE A 41 O MET A 57 SHEET 3 AA5 4 ILE A 29 GLY A 32 -1 N ILE A 31 O SER A 42 SHEET 4 AA5 4 THR A 70 LEU A 72 1 O LEU A 72 N ALA A 30 SHEET 1 AA6 4 SER A 242 ILE A 253 0 SHEET 2 AA6 4 VAL A 329 THR A 337 -1 O LEU A 334 N VAL A 245 SHEET 3 AA6 4 ARG A 285 PHE A 292 -1 N ARG A 285 O THR A 337 SHEET 4 AA6 4 THR A 298 VAL A 303 -1 O THR A 298 N LEU A 290 LINK OD1 ASP F 8 MN MN F 402 1555 1555 2.09 LINK OD2 ASP F 8 MN MN F 403 1555 1555 2.26 LINK O MET F 9 MN MN F 402 1555 1555 1.94 LINK OD2 ASP F 103 MN MN F 402 1555 1555 2.19 LINK OD1 ASP F 103 MN MN F 403 1555 1555 2.17 LINK OD2 ASP F 103 MN MN F 403 1555 1555 2.19 LINK OE1 GLU F 104 MN MN F 403 1555 1555 2.22 LINK O1G 2TM F 401 MN MN F 402 1555 1555 2.32 LINK O1B 2TM F 401 MN MN F 402 1555 1555 2.14 LINK O1A 2TM F 401 MN MN F 402 1555 1555 2.33 LINK O1A 2TM F 401 MN MN F 403 1555 1555 2.64 LINK OD1 ASP A 8 MN MN A 402 1555 1555 2.05 LINK OD2 ASP A 8 MN MN A 403 1555 1555 2.07 LINK O MET A 9 MN MN A 402 1555 1555 2.07 LINK OD2 ASP A 103 MN MN A 402 1555 1555 2.14 LINK OD1 ASP A 103 MN MN A 403 1555 1555 2.23 LINK OD2 ASP A 103 MN MN A 403 1555 1555 2.09 LINK OE1 GLU A 104 MN MN A 403 1555 1555 2.14 LINK O1G 2TM A 401 MN MN A 402 1555 1555 2.02 LINK O1B 2TM A 401 MN MN A 402 1555 1555 2.02 LINK O1A 2TM A 401 MN MN A 402 1555 1555 2.10 LINK O1A 2TM A 401 MN MN A 403 1555 1555 2.31 LINK MN MN A 402 MN MN A 403 1555 1555 2.92 SITE 1 AC1 16 ASP F 8 MET F 9 ASP F 10 CYS F 11 SITE 2 AC1 16 PHE F 12 ALA F 13 SER F 42 CYS F 43 SITE 3 AC1 16 ARG F 49 ASP F 103 MN F 402 MN F 403 SITE 4 AC1 16 HOH F 502 DG G 840 DG G 841 DC H 873 SITE 1 AC2 5 ASP F 8 MET F 9 ASP F 103 2TM F 401 SITE 2 AC2 5 MN F 403 SITE 1 AC3 7 ASP F 8 ASP F 103 GLU F 104 2TM F 401 SITE 2 AC3 7 MN F 402 HOH F 501 DC H 873 SITE 1 AC4 16 ASP A 8 MET A 9 ASP A 10 CYS A 11 SITE 2 AC4 16 PHE A 12 ALA A 13 SER A 42 CYS A 43 SITE 3 AC4 16 ARG A 49 ASP A 103 LYS A 157 MN A 402 SITE 4 AC4 16 MN A 403 DG B 840 DG B 841 DC C 873 SITE 1 AC5 6 ASP A 8 MET A 9 ASP A 103 LYS A 157 SITE 2 AC5 6 2TM A 401 MN A 403 SITE 1 AC6 6 ASP A 8 ASP A 103 GLU A 104 2TM A 401 SITE 2 AC6 6 MN A 402 DC C 873 CRYST1 86.151 57.244 110.793 90.00 92.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011607 0.000000 0.000458 0.00000 SCALE2 0.000000 0.017469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009033 0.00000