HEADER HYDROLASE 17-APR-19 6JVV TITLE CRYSTAL STRUCTURE OF MALEYLPYRUVATE HYDROLASE FROM SPHINGOBIUM.SP SYK- TITLE 2 6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALEYLPYRUVATE HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOBIUM SP. (STRAIN NBRC 103272 / SYK-6); SOURCE 3 ORGANISM_TAXID: 627192; SOURCE 4 STRAIN: NBRC 103272 / SYK-6; SOURCE 5 GENE: SLG_11280; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PALSMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.HONG,K.-J.KIM REVDAT 3 22-NOV-23 6JVV 1 REMARK REVDAT 2 19-JUN-19 6JVV 1 JRNL REVDAT 1 29-MAY-19 6JVV 0 JRNL AUTH H.HONG,H.SEO,K.J.KIM JRNL TITL STRUCTURAL INSIGHTS INTO A MALEYLPYRUVATE HYDROLASE FROM JRNL TITL 2 SPHINGOBIUM SP. SYK-6, A BACTERIUM DEGRADING LIGNIN-DERIVED JRNL TITL 3 ARYLS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 514 765 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 31079929 JRNL DOI 10.1016/J.BBRC.2019.05.030 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 86720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4511 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.55 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5975 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 303 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : 0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.136 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4211 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4057 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5740 ; 1.934 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9365 ; 1.506 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 6.718 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 209 ;32.238 ;21.005 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 656 ;12.835 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;19.159 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 554 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4727 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 864 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6JVV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 61.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.35000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4PFZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, LITHIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.25950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 89 REMARK 465 GLY A 90 REMARK 465 ARG A 91 REMARK 465 GLU A 92 REMARK 465 MET A 93 REMARK 465 GLN A 94 REMARK 465 ALA A 95 REMARK 465 GLN A 96 REMARK 465 TYR A 97 REMARK 465 ARG A 98 REMARK 465 ALA A 99 REMARK 465 THR A 100 REMARK 465 ASN A 101 REMARK 465 GLN A 102 REMARK 465 ARG A 169 REMARK 465 GLU A 170 REMARK 465 GLU A 171 REMARK 465 GLN A 277 REMARK 465 GLU A 278 REMARK 465 GLY A 279 REMARK 465 MET A 280 REMARK 465 THR A 281 REMARK 465 GLU A 282 REMARK 465 VAL A 283 REMARK 465 PHE A 284 REMARK 465 ALA A 285 REMARK 465 GLN A 286 REMARK 465 PRO A 287 REMARK 465 TYR A 288 REMARK 465 VAL A 289 REMARK 465 PRO A 290 REMARK 465 PRO A 291 REMARK 465 ILE A 292 REMARK 465 ILE A 293 REMARK 465 LYS A 294 REMARK 465 GLN A 295 REMARK 465 LEU A 296 REMARK 465 GLU A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 MET B 93 REMARK 465 GLN B 94 REMARK 465 ALA B 95 REMARK 465 GLN B 96 REMARK 465 TYR B 97 REMARK 465 ARG B 98 REMARK 465 ALA B 99 REMARK 465 THR B 100 REMARK 465 GLU B 170 REMARK 465 GLU B 171 REMARK 465 GLN B 277 REMARK 465 GLU B 278 REMARK 465 GLY B 279 REMARK 465 MET B 280 REMARK 465 THR B 281 REMARK 465 GLU B 282 REMARK 465 VAL B 283 REMARK 465 PHE B 284 REMARK 465 ALA B 285 REMARK 465 GLN B 286 REMARK 465 PRO B 287 REMARK 465 TYR B 288 REMARK 465 VAL B 289 REMARK 465 PRO B 290 REMARK 465 PRO B 291 REMARK 465 ILE B 292 REMARK 465 ILE B 293 REMARK 465 LYS B 294 REMARK 465 GLN B 295 REMARK 465 LEU B 296 REMARK 465 GLU B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 91 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 652 O HOH B 661 1.82 REMARK 500 NH2 ARG B 49 O HOH B 501 1.94 REMARK 500 O HOH A 525 O HOH A 592 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 53 NH1 ARG B 172 2747 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 113 CB SER A 113 OG -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 178 CB - CG - CD1 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 5 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 84 -117.66 53.61 REMARK 500 ASN A 85 18.41 84.67 REMARK 500 ASN A 207 -126.20 53.53 REMARK 500 GLN A 265 -7.25 73.39 REMARK 500 VAL B 84 -104.82 47.84 REMARK 500 VAL B 84 -109.60 52.26 REMARK 500 ARG B 91 -84.19 -166.90 REMARK 500 ASN B 207 -124.28 53.08 REMARK 500 GLN B 265 -4.93 74.57 REMARK 500 GLN B 265 -4.93 74.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 407 DBREF 6JVV A 1 295 UNP G2IPX5 G2IPX5_SPHSK 1 295 DBREF 6JVV B 1 295 UNP G2IPX5 G2IPX5_SPHSK 1 295 SEQADV 6JVV LEU A 296 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV GLU A 297 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS A 298 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS A 299 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS A 300 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS A 301 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS A 302 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS A 303 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV LEU B 296 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV GLU B 297 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS B 298 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS B 299 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS B 300 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS B 301 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS B 302 UNP G2IPX5 EXPRESSION TAG SEQADV 6JVV HIS B 303 UNP G2IPX5 EXPRESSION TAG SEQRES 1 A 303 MET ARG LEU ALA ARG PHE ASP GLY GLY ARG LEU GLY VAL SEQRES 2 A 303 VAL ILE GLY ASP GLU ILE ALA ASP ILE THR ALA LEU THR SEQRES 3 A 303 GLY ALA ASP PRO ALA GLN TRP PRO ASP MET ASN MET ILE SEQRES 4 A 303 ARG LEU ILE ARG ASP PHE GLU GLY LEU ARG GLY ALA ILE SEQRES 5 A 303 GLU ALA ALA LEU PRO GLY LEU ALA ARG ILE PRO LEU ALA SEQRES 6 A 303 GLN VAL SER LEU GLU THR PRO VAL PRO TRP PRO ASN LYS SEQRES 7 A 303 ILE ILE ALA TYR PRO VAL ASN TYR HIS ALA HIS GLY ARG SEQRES 8 A 303 GLU MET GLN ALA GLN TYR ARG ALA THR ASN GLN GLY PHE SEQRES 9 A 303 PHE LEU LYS PRO GLY SER ALA LEU SER GLY PRO THR ASP SEQRES 10 A 303 PRO VAL VAL LEU PRO ALA VAL PRO GLY ARG GLU VAL HIS SEQRES 11 A 303 HIS GLU SER GLU LEU ALA ILE ILE ILE GLY LYS THR CYS SEQRES 12 A 303 ARG SER VAL ALA ARG GLU ASP TRP LYS ASP VAL VAL PHE SEQRES 13 A 303 GLY TYR ALA CYS LEU LEU ASP MET VAL VAL ARG GLY ARG SEQRES 14 A 303 GLU GLU ARG VAL PHE ARG LYS ALA TYR ASP THR PHE CYS SEQRES 15 A 303 PRO VAL GLY PRO TRP ILE THR THR ALA ASP ALA VAL ASN SEQRES 16 A 303 ASP PRO ALA THR LEU ASP MET LYS LEU TRP VAL ASN ASP SEQRES 17 A 303 ASP LEU ARG GLN LYS ALA ASN THR ARG ASP LEU VAL LEU SEQRES 18 A 303 ASP ILE PRO GLY MET ILE ALA THR ALA SER ALA VAL MET SEQRES 19 A 303 THR LEU GLN PRO GLY ASP ILE ILE ALA THR GLY THR PRO SEQRES 20 A 303 GLU GLY VAL GLY PRO VAL VAL ASP GLY ASP ARG ILE ARG SEQRES 21 A 303 ILE VAL ILE ASP GLN VAL GLY GLU MET ALA VAL ASP VAL SEQRES 22 A 303 VAL GLN GLY GLN GLU GLY MET THR GLU VAL PHE ALA GLN SEQRES 23 A 303 PRO TYR VAL PRO PRO ILE ILE LYS GLN LEU GLU HIS HIS SEQRES 24 A 303 HIS HIS HIS HIS SEQRES 1 B 303 MET ARG LEU ALA ARG PHE ASP GLY GLY ARG LEU GLY VAL SEQRES 2 B 303 VAL ILE GLY ASP GLU ILE ALA ASP ILE THR ALA LEU THR SEQRES 3 B 303 GLY ALA ASP PRO ALA GLN TRP PRO ASP MET ASN MET ILE SEQRES 4 B 303 ARG LEU ILE ARG ASP PHE GLU GLY LEU ARG GLY ALA ILE SEQRES 5 B 303 GLU ALA ALA LEU PRO GLY LEU ALA ARG ILE PRO LEU ALA SEQRES 6 B 303 GLN VAL SER LEU GLU THR PRO VAL PRO TRP PRO ASN LYS SEQRES 7 B 303 ILE ILE ALA TYR PRO VAL ASN TYR HIS ALA HIS GLY ARG SEQRES 8 B 303 GLU MET GLN ALA GLN TYR ARG ALA THR ASN GLN GLY PHE SEQRES 9 B 303 PHE LEU LYS PRO GLY SER ALA LEU SER GLY PRO THR ASP SEQRES 10 B 303 PRO VAL VAL LEU PRO ALA VAL PRO GLY ARG GLU VAL HIS SEQRES 11 B 303 HIS GLU SER GLU LEU ALA ILE ILE ILE GLY LYS THR CYS SEQRES 12 B 303 ARG SER VAL ALA ARG GLU ASP TRP LYS ASP VAL VAL PHE SEQRES 13 B 303 GLY TYR ALA CYS LEU LEU ASP MET VAL VAL ARG GLY ARG SEQRES 14 B 303 GLU GLU ARG VAL PHE ARG LYS ALA TYR ASP THR PHE CYS SEQRES 15 B 303 PRO VAL GLY PRO TRP ILE THR THR ALA ASP ALA VAL ASN SEQRES 16 B 303 ASP PRO ALA THR LEU ASP MET LYS LEU TRP VAL ASN ASP SEQRES 17 B 303 ASP LEU ARG GLN LYS ALA ASN THR ARG ASP LEU VAL LEU SEQRES 18 B 303 ASP ILE PRO GLY MET ILE ALA THR ALA SER ALA VAL MET SEQRES 19 B 303 THR LEU GLN PRO GLY ASP ILE ILE ALA THR GLY THR PRO SEQRES 20 B 303 GLU GLY VAL GLY PRO VAL VAL ASP GLY ASP ARG ILE ARG SEQRES 21 B 303 ILE VAL ILE ASP GLN VAL GLY GLU MET ALA VAL ASP VAL SEQRES 22 B 303 VAL GLN GLY GLN GLU GLY MET THR GLU VAL PHE ALA GLN SEQRES 23 B 303 PRO TYR VAL PRO PRO ILE ILE LYS GLN LEU GLU HIS HIS SEQRES 24 B 303 HIS HIS HIS HIS HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL B 401 6 HET GOL B 402 6 HET GOL B 403 6 HET GOL B 404 6 HET GOL B 405 6 HET PEG B 406 7 HET SO4 B 407 5 HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 9(C3 H8 O3) FORMUL 12 PEG C4 H10 O3 FORMUL 13 SO4 O4 S 2- FORMUL 14 HOH *330(H2 O) HELIX 1 AA1 ILE A 22 GLY A 27 1 6 HELIX 2 AA2 MET A 36 ASP A 44 1 9 HELIX 3 AA3 ASP A 44 LEU A 56 1 13 HELIX 4 AA4 PRO A 57 LEU A 59 5 3 HELIX 5 AA5 ALA A 65 VAL A 67 5 3 HELIX 6 AA6 PRO A 108 SER A 110 5 3 HELIX 7 AA7 ALA A 147 ASP A 153 5 7 HELIX 8 AA8 ARG A 172 ALA A 177 5 6 HELIX 9 AA9 ASP A 192 VAL A 194 5 3 HELIX 10 AB1 ASP A 196 THR A 199 5 4 HELIX 11 AB2 ARG A 217 LEU A 219 5 3 HELIX 12 AB3 ASP A 222 MET A 234 1 13 HELIX 13 AB4 ILE B 22 GLY B 27 1 6 HELIX 14 AB5 MET B 36 ASP B 44 1 9 HELIX 15 AB6 ASP B 44 LEU B 56 1 13 HELIX 16 AB7 PRO B 57 LEU B 59 5 3 HELIX 17 AB8 ALA B 65 VAL B 67 5 3 HELIX 18 AB9 PRO B 108 SER B 110 5 3 HELIX 19 AC1 ALA B 147 ASP B 153 5 7 HELIX 20 AC2 ARG B 172 ALA B 177 5 6 HELIX 21 AC3 ASP B 192 VAL B 194 5 3 HELIX 22 AC4 ASP B 196 THR B 199 5 4 HELIX 23 AC5 ARG B 217 LEU B 219 5 3 HELIX 24 AC6 ASP B 222 MET B 234 1 13 SHEET 1 AA110 ARG A 61 PRO A 63 0 SHEET 2 AA110 GLU A 18 ASP A 21 -1 N ILE A 19 O ILE A 62 SHEET 3 AA110 ARG A 10 ILE A 15 -1 N VAL A 13 O ALA A 20 SHEET 4 AA110 ARG A 2 PHE A 6 -1 N ALA A 4 O GLY A 12 SHEET 5 AA110 CYS A 182 THR A 190 -1 O ILE A 188 N LEU A 3 SHEET 6 AA110 VAL A 155 LEU A 162 -1 N TYR A 158 O THR A 189 SHEET 7 AA110 SER A 133 ILE A 139 -1 N ILE A 138 O GLY A 157 SHEET 8 AA110 ILE A 241 ALA A 243 -1 O ILE A 242 N ILE A 137 SHEET 9 AA110 ILE A 79 ALA A 81 1 N ILE A 80 O ILE A 241 SHEET 10 AA110 PHE A 105 LYS A 107 -1 O PHE A 105 N ALA A 81 SHEET 1 AA2 4 LEU A 69 GLU A 70 0 SHEET 2 AA2 4 ARG A 2 PHE A 6 -1 N ARG A 5 O GLU A 70 SHEET 3 AA2 4 CYS A 182 THR A 190 -1 O ILE A 188 N LEU A 3 SHEET 4 AA2 4 LEU A 112 SER A 113 1 N SER A 113 O VAL A 184 SHEET 1 AA3 5 VAL A 119 LEU A 121 0 SHEET 2 AA3 5 GLY A 267 GLN A 275 1 O VAL A 274 N LEU A 121 SHEET 3 AA3 5 ARG A 258 ILE A 263 -1 N ILE A 259 O VAL A 271 SHEET 4 AA3 5 ASP A 201 VAL A 206 -1 N LYS A 203 O VAL A 262 SHEET 5 AA3 5 ASP A 209 ASN A 215 -1 O ARG A 211 N LEU A 204 SHEET 1 AA4 3 VAL A 165 VAL A 166 0 SHEET 2 AA4 3 VAL A 129 HIS A 131 -1 N HIS A 130 O VAL A 165 SHEET 3 AA4 3 GLY A 251 VAL A 253 -1 O VAL A 253 N VAL A 129 SHEET 1 AA510 ARG B 61 PRO B 63 0 SHEET 2 AA510 GLU B 18 ASP B 21 -1 N ILE B 19 O ILE B 62 SHEET 3 AA510 ARG B 10 ILE B 15 -1 N ILE B 15 O GLU B 18 SHEET 4 AA510 ARG B 2 PHE B 6 -1 N ALA B 4 O GLY B 12 SHEET 5 AA510 CYS B 182 THR B 190 -1 O ILE B 188 N LEU B 3 SHEET 6 AA510 VAL B 155 LEU B 162 -1 N TYR B 158 O THR B 189 SHEET 7 AA510 SER B 133 ILE B 139 -1 N ILE B 138 O GLY B 157 SHEET 8 AA510 ILE B 241 ALA B 243 -1 O ILE B 242 N ILE B 137 SHEET 9 AA510 ILE B 79 ALA B 81 1 N ILE B 80 O ALA B 243 SHEET 10 AA510 PHE B 105 LYS B 107 -1 O PHE B 105 N ALA B 81 SHEET 1 AA6 4 LEU B 69 GLU B 70 0 SHEET 2 AA6 4 ARG B 2 PHE B 6 -1 N ARG B 5 O GLU B 70 SHEET 3 AA6 4 CYS B 182 THR B 190 -1 O ILE B 188 N LEU B 3 SHEET 4 AA6 4 LEU B 112 SER B 113 1 N SER B 113 O VAL B 184 SHEET 1 AA7 5 VAL B 119 LEU B 121 0 SHEET 2 AA7 5 GLY B 267 GLN B 275 1 O VAL B 274 N LEU B 121 SHEET 3 AA7 5 ARG B 258 ILE B 263 -1 N ILE B 259 O VAL B 271 SHEET 4 AA7 5 ASP B 201 VAL B 206 -1 N LYS B 203 O VAL B 262 SHEET 5 AA7 5 ASP B 209 ASN B 215 -1 O ALA B 214 N MET B 202 SHEET 1 AA8 3 VAL B 165 VAL B 166 0 SHEET 2 AA8 3 VAL B 129 HIS B 131 -1 N HIS B 130 O VAL B 165 SHEET 3 AA8 3 GLY B 251 VAL B 253 -1 O VAL B 253 N VAL B 129 CISPEP 1 TRP A 33 PRO A 34 0 -9.87 CISPEP 2 GLY A 185 PRO A 186 0 0.17 CISPEP 3 TRP B 33 PRO B 34 0 -5.87 CISPEP 4 GLY B 185 PRO B 186 0 4.12 SITE 1 AC1 7 ALA A 147 ARG A 148 HOH A 520 HOH A 524 SITE 2 AC1 7 HOH A 549 HOH A 587 HOH A 588 SITE 1 AC2 3 GLU A 248 GLY A 249 VAL A 250 SITE 1 AC3 7 ASP A 196 PRO A 197 ALA A 198 PRO A 224 SITE 2 AC3 7 HOH A 544 HOH A 560 HOH A 598 SITE 1 AC4 8 GLY A 140 LYS A 152 ASP A 153 VAL A 154 SITE 2 AC4 8 VAL A 155 PHE A 156 HOH A 503 HOH A 504 SITE 1 AC5 11 ASN A 77 LYS A 107 PRO A 108 GLY A 109 SITE 2 AC5 11 HOH A 540 ASN B 77 LYS B 78 ILE B 79 SITE 3 AC5 11 LYS B 107 PRO B 108 GLY B 109 SITE 1 AC6 4 ARG B 43 THR B 142 PRO B 238 HOH B 506 SITE 1 AC7 6 THR A 235 SER B 110 ASP B 179 HOH B 558 SITE 2 AC7 6 HOH B 565 HOH B 614 SITE 1 AC8 4 ARG B 148 VAL B 220 LEU B 221 ASP B 222 SITE 1 AC9 5 ASP B 196 ALA B 198 ASP B 222 PRO B 224 SITE 2 AC9 5 HOH B 583 SITE 1 AD1 6 TRP A 205 ASN A 207 ARG A 260 TRP B 205 SITE 2 AD1 6 ASN B 207 ARG B 260 SITE 1 AD2 3 HIS B 87 ALA B 88 HIS B 89 CRYST1 67.089 74.519 67.967 90.00 118.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014906 0.000000 0.008114 0.00000 SCALE2 0.000000 0.013419 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016752 0.00000