HEADER DNA BINDING PROTEIN/DNA 18-APR-19 6JW0 TITLE UNIVERSAL RVD R* ACCOMMODATES CYTOSINE VIA WATER-MEDIATED INTERACTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAL EFFECTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'- COMPND 7 D(*TP*GP*TP*CP*CP*CP*TP*TP*CP*GP*CP*GP*TP*CP*TP*CP*T)-3'); COMPND 8 CHAIN: I, C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'- COMPND 12 D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'); COMPND 13 CHAIN: J, D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CAMPESTRIS PV. ARMORACIAE; SOURCE 3 ORGANISM_TAXID: 338; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS DNA TAL EFFECTOR, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.LIU,C.YI REVDAT 3 22-NOV-23 6JW0 1 REMARK REVDAT 2 04-NOV-20 6JW0 1 JRNL REVDAT 1 22-APR-20 6JW0 0 JRNL AUTH L.LIU,Y.ZHANG,M.LIU,W.WEI,C.YI,J.PENG JRNL TITL STRUCTURAL INSIGHTS INTO THE SPECIFIC RECOGNITION OF JRNL TITL 2 5-METHYLCYTOSINE AND 5-HYDROXYMETHYLCYTOSINE BY TAL JRNL TITL 3 EFFECTORS. JRNL REF J.MOL.BIOL. V. 432 1035 2020 JRNL REFN ESSN 1089-8638 JRNL PMID 31863750 JRNL DOI 10.1016/J.JMB.2019.11.023 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 85.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 58923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3193 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4061 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.4360 REMARK 3 BIN FREE R VALUE SET COUNT : 216 REMARK 3 BIN FREE R VALUE : 0.4440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7212 REMARK 3 NUCLEIC ACID ATOMS : 1380 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 147 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -3.28000 REMARK 3 B33 (A**2) : 2.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.59000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.304 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.229 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.196 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.983 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8868 ; 0.013 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 8184 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12380 ; 1.685 ; 1.820 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18806 ; 1.310 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 990 ; 9.923 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 276 ;39.685 ;25.797 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1190 ;17.994 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;17.628 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1440 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9324 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1882 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 230 725 B 230 725 29468 0.110 0.050 REMARK 3 2 I -2 14 C -2 14 1319 0.120 0.050 REMARK 3 3 J -14 2 D -14 2 1248 0.110 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REMARK 3 REFINED INDIVIDUALLY REMARK 3 SF FILE CONTAINS FRIEDEL PAIRS UNDER I/F_MINUS AND I/F_PLUS REMARK 3 COLUMNS. REMARK 4 REMARK 4 6JW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011770. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 130 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58923 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 85.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4GJP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8-10% PEG3350 (W/V), 10% ETHANOL AND REMARK 280 0.1M MES PH 6.7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.69800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -61.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 726 REMARK 465 HIS A 727 REMARK 465 HIS B 726 REMARK 465 HIS B 727 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 230 CG SD CE REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 DT I 14 C7 REMARK 470 MET B 230 CG SD CE REMARK 470 ARG B 236 CG CD NE CZ NH1 NH2 REMARK 470 DT C 14 C7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 821 O HOH A 842 1.49 REMARK 500 O HOH A 805 O HOH A 839 1.51 REMARK 500 O HOH A 806 O HOH A 838 1.56 REMARK 500 O HOH B 804 O HOH B 810 1.60 REMARK 500 O HOH B 808 O HOH B 829 1.79 REMARK 500 O HOH A 801 O HOH A 836 1.88 REMARK 500 O LEU A 720 O4 DT C 14 1.89 REMARK 500 N HIS A 723 O2 DT C 14 1.99 REMARK 500 O ALA B 685 O SER B 688 2.00 REMARK 500 O LEU A 720 C4 DT C 14 2.06 REMARK 500 O ALA A 671 O HOH A 801 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 549 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 549 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 PRO A 690 C - N - CA ANGL. DEV. = -13.3 DEGREES REMARK 500 DG I 7 O5' - P - OP2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LEU B 241 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 VAL B 384 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 ARG B 549 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 549 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 689 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT C -2 C5' - C4' - O4' ANGL. DEV. = 8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 236 -9.26 64.27 REMARK 500 SER A 299 49.75 -93.35 REMARK 500 SER A 333 51.01 -90.64 REMARK 500 SER A 367 46.52 -86.48 REMARK 500 SER A 401 47.49 -83.59 REMARK 500 SER A 435 40.44 -89.06 REMARK 500 HIS A 524 -119.77 44.75 REMARK 500 SER A 536 44.10 -94.22 REMARK 500 SER A 570 49.11 -88.15 REMARK 500 SER A 638 41.33 -94.76 REMARK 500 PRO A 690 92.80 -30.85 REMARK 500 ASP A 691 -166.66 -54.23 REMARK 500 PRO A 692 69.06 -46.48 REMARK 500 ALA A 693 61.69 5.96 REMARK 500 HIS A 723 -27.49 -168.84 REMARK 500 SER B 233 -42.20 134.15 REMARK 500 GLU B 239 -38.77 -25.80 REMARK 500 LEU B 241 -41.08 -24.38 REMARK 500 ALA B 285 -145.06 63.74 REMARK 500 SER B 299 49.84 -96.13 REMARK 500 SER B 333 50.90 -90.82 REMARK 500 SER B 367 48.74 -90.85 REMARK 500 SER B 401 49.17 -81.91 REMARK 500 SER B 435 44.57 -91.36 REMARK 500 SER B 536 40.61 -91.81 REMARK 500 SER B 570 49.69 -87.17 REMARK 500 SER B 638 40.50 -93.84 REMARK 500 PRO B 690 93.45 -23.98 REMARK 500 ASP B 691 -178.02 -53.26 REMARK 500 ALA B 693 -34.20 6.70 REMARK 500 LEU B 694 -102.29 106.12 REMARK 500 ALA B 695 73.82 -171.30 REMARK 500 ALA B 716 1.08 -69.29 REMARK 500 LYS B 719 66.15 -18.95 REMARK 500 LEU B 720 92.31 72.46 REMARK 500 HIS B 723 -27.09 -163.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 232 SER A 233 145.15 REMARK 500 ARG A 236 ALA A 237 146.77 REMARK 500 PRO A 251 PRO A 252 57.73 REMARK 500 ALA A 285 PRO A 286 48.63 REMARK 500 ARG A 689 PRO A 690 -119.53 REMARK 500 ASP A 691 PRO A 692 -123.61 REMARK 500 PRO B 251 PRO B 252 64.80 REMARK 500 PRO B 692 ALA B 693 -147.65 REMARK 500 ALA B 693 LEU B 694 130.92 REMARK 500 ALA B 695 ALA B 696 143.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 PRO A 251 11.37 REMARK 500 ALA A 285 12.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 6JW0 A 230 727 PDB 6JW0 6JW0 230 727 DBREF 6JW0 I -2 14 PDB 6JW0 6JW0 -2 14 DBREF 6JW0 J -14 2 PDB 6JW0 6JW0 -14 2 DBREF 6JW0 B 230 727 PDB 6JW0 6JW0 230 727 DBREF 6JW0 C -2 14 PDB 6JW0 6JW0 -2 14 DBREF 6JW0 D -14 2 PDB 6JW0 6JW0 -14 2 SEQRES 1 A 498 MET GLN TRP SER GLY ALA ARG ALA LEU GLU ALA LEU LEU SEQRES 2 A 498 THR VAL ALA GLY GLU LEU ARG GLY PRO PRO LEU GLN LEU SEQRES 3 A 498 ASP THR GLY GLN LEU LEU LYS ILE ALA LYS ARG GLY GLY SEQRES 4 A 498 VAL THR ALA VAL GLU ALA VAL HIS ALA TRP ARG ASN ALA SEQRES 5 A 498 LEU THR GLY ALA PRO LEU ASN LEU THR PRO GLU GLN VAL SEQRES 6 A 498 VAL ALA ILE ALA SER HIS ASP GLY GLY LYS GLN ALA LEU SEQRES 7 A 498 GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA SEQRES 8 A 498 HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER SEQRES 9 A 498 HIS ASP GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG SEQRES 10 A 498 LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO SEQRES 11 A 498 GLU GLN VAL VAL ALA ILE ALA SER HIS ASP GLY GLY LYS SEQRES 12 A 498 GLN ALA LEU GLU THR VAL GLN ALA LEU LEU PRO VAL LEU SEQRES 13 A 498 CYS GLN ALA HIS GLY LEU THR PRO GLU GLN VAL VAL ALA SEQRES 14 A 498 ILE ALA SER ASN GLY GLY GLY LYS GLN ALA LEU GLU THR SEQRES 15 A 498 VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY SEQRES 16 A 498 LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER ASN GLY SEQRES 17 A 498 GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG LEU LEU SEQRES 18 A 498 PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO GLN GLN SEQRES 19 A 498 VAL VAL ALA ILE ALA SER ARG GLY GLY LYS GLN ALA LEU SEQRES 20 A 498 GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA SEQRES 21 A 498 HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER SEQRES 22 A 498 ASN ASN GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG SEQRES 23 A 498 LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO SEQRES 24 A 498 GLN GLN VAL VAL ALA ILE ALA SER HIS ASP GLY GLY LYS SEQRES 25 A 498 GLN ALA LEU GLU THR VAL GLN ARG LEU LEU PRO VAL LEU SEQRES 26 A 498 CYS GLN ALA HIS GLY LEU THR PRO GLN GLN VAL VAL ALA SEQRES 27 A 498 ILE ALA SER ASN ASN GLY GLY LYS GLN ALA LEU GLU THR SEQRES 28 A 498 VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY SEQRES 29 A 498 LEU THR PRO GLU GLN VAL VAL ALA ILE ALA SER ASN GLY SEQRES 30 A 498 GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG LEU LEU SEQRES 31 A 498 PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO GLU GLN SEQRES 32 A 498 VAL VAL ALA ILE ALA SER HIS ASP GLY GLY LYS GLN ALA SEQRES 33 A 498 LEU GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN SEQRES 34 A 498 ALA HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SEQRES 35 A 498 SER ASN GLY GLY GLY ARG PRO ALA LEU GLU SER ILE VAL SEQRES 36 A 498 ALA GLN LEU SER ARG PRO ASP PRO ALA LEU ALA ALA LEU SEQRES 37 A 498 THR ASN ASP HIS LEU VAL ALA LEU ALA CYS LEU GLY GLY SEQRES 38 A 498 ARG PRO ALA LEU ASP ALA VAL LYS LYS LEU GLU HIS HIS SEQRES 39 A 498 HIS HIS HIS HIS SEQRES 1 I 17 DT DG DT DC DC DC DT DT DC DG DC DG DT SEQRES 2 I 17 DC DT DC DT SEQRES 1 J 17 DA DG DA DG DA DC DG DC DG DA DA DG DG SEQRES 2 J 17 DG DA DC DA SEQRES 1 B 498 MET GLN TRP SER GLY ALA ARG ALA LEU GLU ALA LEU LEU SEQRES 2 B 498 THR VAL ALA GLY GLU LEU ARG GLY PRO PRO LEU GLN LEU SEQRES 3 B 498 ASP THR GLY GLN LEU LEU LYS ILE ALA LYS ARG GLY GLY SEQRES 4 B 498 VAL THR ALA VAL GLU ALA VAL HIS ALA TRP ARG ASN ALA SEQRES 5 B 498 LEU THR GLY ALA PRO LEU ASN LEU THR PRO GLU GLN VAL SEQRES 6 B 498 VAL ALA ILE ALA SER HIS ASP GLY GLY LYS GLN ALA LEU SEQRES 7 B 498 GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA SEQRES 8 B 498 HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER SEQRES 9 B 498 HIS ASP GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG SEQRES 10 B 498 LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO SEQRES 11 B 498 GLU GLN VAL VAL ALA ILE ALA SER HIS ASP GLY GLY LYS SEQRES 12 B 498 GLN ALA LEU GLU THR VAL GLN ALA LEU LEU PRO VAL LEU SEQRES 13 B 498 CYS GLN ALA HIS GLY LEU THR PRO GLU GLN VAL VAL ALA SEQRES 14 B 498 ILE ALA SER ASN GLY GLY GLY LYS GLN ALA LEU GLU THR SEQRES 15 B 498 VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY SEQRES 16 B 498 LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER ASN GLY SEQRES 17 B 498 GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG LEU LEU SEQRES 18 B 498 PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO GLN GLN SEQRES 19 B 498 VAL VAL ALA ILE ALA SER ARG GLY GLY LYS GLN ALA LEU SEQRES 20 B 498 GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA SEQRES 21 B 498 HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SER SEQRES 22 B 498 ASN ASN GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG SEQRES 23 B 498 LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO SEQRES 24 B 498 GLN GLN VAL VAL ALA ILE ALA SER HIS ASP GLY GLY LYS SEQRES 25 B 498 GLN ALA LEU GLU THR VAL GLN ARG LEU LEU PRO VAL LEU SEQRES 26 B 498 CYS GLN ALA HIS GLY LEU THR PRO GLN GLN VAL VAL ALA SEQRES 27 B 498 ILE ALA SER ASN ASN GLY GLY LYS GLN ALA LEU GLU THR SEQRES 28 B 498 VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN ALA HIS GLY SEQRES 29 B 498 LEU THR PRO GLU GLN VAL VAL ALA ILE ALA SER ASN GLY SEQRES 30 B 498 GLY GLY LYS GLN ALA LEU GLU THR VAL GLN ARG LEU LEU SEQRES 31 B 498 PRO VAL LEU CYS GLN ALA HIS GLY LEU THR PRO GLU GLN SEQRES 32 B 498 VAL VAL ALA ILE ALA SER HIS ASP GLY GLY LYS GLN ALA SEQRES 33 B 498 LEU GLU THR VAL GLN ARG LEU LEU PRO VAL LEU CYS GLN SEQRES 34 B 498 ALA HIS GLY LEU THR PRO GLN GLN VAL VAL ALA ILE ALA SEQRES 35 B 498 SER ASN GLY GLY GLY ARG PRO ALA LEU GLU SER ILE VAL SEQRES 36 B 498 ALA GLN LEU SER ARG PRO ASP PRO ALA LEU ALA ALA LEU SEQRES 37 B 498 THR ASN ASP HIS LEU VAL ALA LEU ALA CYS LEU GLY GLY SEQRES 38 B 498 ARG PRO ALA LEU ASP ALA VAL LYS LYS LEU GLU HIS HIS SEQRES 39 B 498 HIS HIS HIS HIS SEQRES 1 C 17 DT DG DT DC DC DC DT DT DC DG DC DG DT SEQRES 2 C 17 DC DT DC DT SEQRES 1 D 17 DA DG DA DG DA DC DG DC DG DA DA DG DG SEQRES 2 D 17 DG DA DC DA FORMUL 7 HOH *147(H2 O) HELIX 1 AA1 ARG A 236 ARG A 249 1 14 HELIX 2 AA2 ASP A 256 GLY A 267 1 12 HELIX 3 AA3 GLY A 267 TRP A 278 1 12 HELIX 4 AA4 TRP A 278 GLY A 284 1 7 HELIX 5 AA5 THR A 290 SER A 299 1 10 HELIX 6 AA6 GLY A 302 ALA A 320 1 19 HELIX 7 AA7 THR A 324 SER A 333 1 10 HELIX 8 AA8 GLY A 336 ALA A 354 1 19 HELIX 9 AA9 THR A 358 SER A 367 1 10 HELIX 10 AB1 GLY A 370 ALA A 388 1 19 HELIX 11 AB2 THR A 392 SER A 401 1 10 HELIX 12 AB3 GLY A 404 ALA A 422 1 19 HELIX 13 AB4 THR A 426 SER A 435 1 10 HELIX 14 AB5 GLY A 438 ALA A 456 1 19 HELIX 15 AB6 THR A 460 ALA A 489 1 30 HELIX 16 AB7 THR A 493 SER A 502 1 10 HELIX 17 AB8 GLY A 505 GLN A 522 1 18 HELIX 18 AB9 THR A 527 SER A 536 1 10 HELIX 19 AC1 GLY A 539 ALA A 557 1 19 HELIX 20 AC2 THR A 561 SER A 570 1 10 HELIX 21 AC3 GLY A 573 GLY A 593 1 21 HELIX 22 AC4 THR A 595 SER A 604 1 10 HELIX 23 AC5 GLY A 607 ALA A 625 1 19 HELIX 24 AC6 THR A 629 SER A 638 1 10 HELIX 25 AC7 GLY A 641 ALA A 659 1 19 HELIX 26 AC8 THR A 663 SER A 672 1 10 HELIX 27 AC9 GLY A 675 ARG A 689 1 15 HELIX 28 AD1 PRO A 690 LEU A 694 5 5 HELIX 29 AD2 THR A 698 HIS A 722 1 25 HELIX 30 AD3 GLU B 239 ARG B 249 1 11 HELIX 31 AD4 ASP B 256 GLY B 267 1 12 HELIX 32 AD5 GLY B 267 TRP B 278 1 12 HELIX 33 AD6 TRP B 278 GLY B 284 1 7 HELIX 34 AD7 THR B 290 SER B 299 1 10 HELIX 35 AD8 GLY B 302 ALA B 320 1 19 HELIX 36 AD9 THR B 324 SER B 333 1 10 HELIX 37 AE1 GLY B 336 ALA B 354 1 19 HELIX 38 AE2 THR B 358 SER B 367 1 10 HELIX 39 AE3 GLY B 370 ALA B 388 1 19 HELIX 40 AE4 THR B 392 SER B 401 1 10 HELIX 41 AE5 GLY B 404 ALA B 422 1 19 HELIX 42 AE6 THR B 426 SER B 435 1 10 HELIX 43 AE7 GLY B 438 ALA B 456 1 19 HELIX 44 AE8 THR B 460 ALA B 489 1 30 HELIX 45 AE9 THR B 493 SER B 502 1 10 HELIX 46 AF1 GLY B 505 ALA B 523 1 19 HELIX 47 AF2 THR B 527 SER B 536 1 10 HELIX 48 AF3 GLY B 539 ALA B 557 1 19 HELIX 49 AF4 THR B 561 SER B 570 1 10 HELIX 50 AF5 GLY B 573 GLY B 593 1 21 HELIX 51 AF6 THR B 595 SER B 604 1 10 HELIX 52 AF7 GLY B 607 ALA B 625 1 19 HELIX 53 AF8 THR B 629 SER B 638 1 10 HELIX 54 AF9 GLY B 641 ALA B 659 1 19 HELIX 55 AG1 THR B 663 SER B 672 1 10 HELIX 56 AG2 GLY B 675 SER B 688 1 14 HELIX 57 AG3 THR B 698 ALA B 716 1 19 HELIX 58 AG4 VAL B 717 LYS B 719 5 3 CRYST1 85.836 87.396 88.135 90.00 104.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011650 0.000000 0.002930 0.00000 SCALE2 0.000000 0.011442 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011700 0.00000