HEADER HYDROLASE 23-APR-19 6JXG TITLE CRYSTASL STRUCTURE OF BETA-GLUCOSIDASE D2-BGL FROM CHAETOMELLA TITLE 2 RAPHIGERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMELLA RAPHIGERA; SOURCE 3 ORGANISM_TAXID: 241714; SOURCE 4 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS GLUCOSIDASE, GLYCOSIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.H.-J.WANG,C.C.LEE,M.R.KAO,T.H.D.HO REVDAT 3 22-NOV-23 6JXG 1 HETSYN REVDAT 2 29-JUL-20 6JXG 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 20-NOV-19 6JXG 0 JRNL AUTH M.R.KAO,H.W.KUO,C.C.LEE,K.Y.HUANG,T.Y.HUANG,C.W.LI,C.W.CHEN, JRNL AUTH 2 A.H.J.WANG,S.M.YU,T.H.D.HO JRNL TITL CHAETOMELLA RAPHIGERABETA-GLUCOSIDASE D2-BGL HAS INTRIGUING JRNL TITL 2 STRUCTURAL FEATURES AND A HIGH SUBSTRATE AFFINITY THAT JRNL TITL 3 RENDERS IT AN EFFICIENT CELLULASE SUPPLEMENT FOR JRNL TITL 4 LIGNOCELLULOSIC BIOMASS HYDROLYSIS. JRNL REF BIOTECHNOL BIOFUELS V. 12 258 2019 JRNL REFN ESSN 1754-6834 JRNL PMID 31700541 JRNL DOI 10.1186/S13068-019-1599-0 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 46547 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2504 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3227 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.1680 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5277 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 526 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 1.45000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.142 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5453 ; 0.020 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5057 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7443 ; 1.996 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11620 ; 1.022 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 712 ; 6.485 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;35.042 ;25.209 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 805 ;15.143 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;21.561 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 846 ; 0.173 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6322 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1207 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2851 ; 1.424 ; 1.566 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2850 ; 1.411 ; 1.564 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3562 ; 1.987 ; 2.340 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3563 ; 1.987 ; 2.342 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2602 ; 1.995 ; 1.708 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2602 ; 1.992 ; 1.708 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3882 ; 2.958 ; 2.497 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6580 ; 4.289 ;13.186 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6393 ; 4.112 ;12.962 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49111 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.8 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4IIB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 3000, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M SODIUM CACODYLATE, PH 6.5., VAPOR DIFFUSION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.88700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.74050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.83050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.74050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.88700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.83050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 714 REMARK 465 GLN A 715 REMARK 465 GLY A 716 REMARK 465 ILE A 717 REMARK 465 ARG A 718 REMARK 465 LYS A 719 REMARK 465 GLY A 720 REMARK 465 GLY A 721 REMARK 465 HIS A 722 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1064 O HOH A 1132 1.56 REMARK 500 O HOH A 933 O HOH A 974 1.58 REMARK 500 O HOH A 901 O HOH A 1324 1.68 REMARK 500 O HOH A 1135 O HOH A 1369 1.83 REMARK 500 O ASN A 566 O HOH A 901 1.84 REMARK 500 OG SER A 595 O HOH A 902 1.92 REMARK 500 O HOH A 992 O HOH A 1064 1.95 REMARK 500 OD2 ASP A 175 O3 NAG A 803 2.06 REMARK 500 OG1 THR A 431 C2 MAN A 804 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1329 O HOH A 1363 3644 1.91 REMARK 500 O HOH A 1326 O HOH A 1339 3554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 29 CG1 - CB - CG2 ANGL. DEV. = 13.9 DEGREES REMARK 500 LEU A 94 CB - CG - CD2 ANGL. DEV. = 12.5 DEGREES REMARK 500 MET A 169 CG - SD - CE ANGL. DEV. = -26.5 DEGREES REMARK 500 VAL A 545 CG1 - CB - CG2 ANGL. DEV. = 11.4 DEGREES REMARK 500 THR A 580 CB - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 ARG A 672 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 672 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 702 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 65 -44.33 78.40 REMARK 500 SER A 128 156.40 93.35 REMARK 500 THR A 168 -30.08 -135.49 REMARK 500 LEU A 181 -74.95 -118.89 REMARK 500 ILE A 218 -61.86 -93.20 REMARK 500 TRP A 263 -126.42 -105.07 REMARK 500 ALA A 320 -137.31 49.69 REMARK 500 ASN A 339 95.09 -163.23 REMARK 500 ASN A 341 61.17 19.01 REMARK 500 LYS A 347 79.88 -151.18 REMARK 500 THR A 415 35.34 -90.20 REMARK 500 ASP A 558 -133.04 50.79 REMARK 500 THR A 580 -169.53 -118.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1427 DISTANCE = 6.09 ANGSTROMS DBREF1 6JXG A 1 722 UNP A0A068FT77_9HELO DBREF2 6JXG A A0A068FT77 1 722 SEQRES 1 A 722 PRO GLY ASP GLY ASP TRP ALA ALA ALA TYR LYS LYS ALA SEQRES 2 A 722 THR ALA ALA LEU ALA LYS LEU SER ASN THR ASP LYS ALA SEQRES 3 A 722 SER ILE VAL THR GLY VAL GLY TRP GLU LYS GLY PRO CYS SEQRES 4 A 722 VAL GLY ASN THR ALA ALA VAL ALA SER ILE GLY LEU PRO SEQRES 5 A 722 GLU LEU CYS TYR GLN ASP GLY PRO LEU GLY ILE ARG PHE SEQRES 6 A 722 VAL GLN ASN VAL THR ALA PHE PRO THR GLY ILE GLN THR SEQRES 7 A 722 ALA SER THR TRP ASP ILE SER LEU ILE TYR SER ARG GLY SEQRES 8 A 722 LEU ALA LEU GLY GLN GLU ALA LYS ALA LEU GLY ILE ASN SEQRES 9 A 722 VAL GLN LEU GLY PRO VAL ALA GLY PRO ILE GLY LYS ILE SEQRES 10 A 722 PRO GLU ALA GLY ARG ASN TRP GLU GLY PHE SER PRO ASP SEQRES 11 A 722 PRO TYR LEU ASN GLY LEU ALA MET SER ASN THR ILE THR SEQRES 12 A 722 GLY MET GLN ASP ALA GLY VAL GLN ALA CYS ALA LYS HIS SEQRES 13 A 722 PHE ILE GLY ASN GLU GLN GLU THR ASN ARG ASP THR MET SEQRES 14 A 722 SER SER ASN ILE ASP ASP ARG THR PHE HIS GLU LEU TYR SEQRES 15 A 722 LEU TRP PRO PHE ALA ASP ALA ILE LYS ALA ASN VAL ALA SEQRES 16 A 722 SER ILE MET CYS SER TYR ASN LYS PHE ASN GLU THR TYR SEQRES 17 A 722 ALA CYS GLU ASN ASN PHE LEU THR THR ILE LEU LYS GLY SEQRES 18 A 722 GLU LEU ASP PHE GLN GLY PHE VAL VAL SER ASP TRP ALA SEQRES 19 A 722 ALA GLN HIS THR THR ILE GLY SER ALA ASN ALA GLY LEU SEQRES 20 A 722 ASP VAL ALA MET PRO GLY ASP ASN PHE GLY ASP ASN TYR SEQRES 21 A 722 TYR LEU TRP GLY SER ASN LEU LEU ALA ALA ILE SER ASN SEQRES 22 A 722 GLY THR VAL ALA GLN SER ARG LEU ASP ASP MET VAL THR SEQRES 23 A 722 ARG ILE LEU ALA SER TRP TYR PHE VAL GLY GLN ASP GLN SEQRES 24 A 722 GLY TYR PRO ALA VAL THR TRP SER SER TRP ASN GLY GLY SEQRES 25 A 722 LEU GLY GLY PRO ASN VAL GLN ALA ASP HIS LYS GLN VAL SEQRES 26 A 722 ALA ARG ALA ILE ALA ARG ASP GLY ILE VAL LEU LEU THR SEQRES 27 A 722 ASN LYS ASN LYS ALA LEU PRO LEU LYS LYS PRO ALA SER SEQRES 28 A 722 LEU ALA ILE ILE GLY GLN ASP ALA ILE ASP ASN PRO ALA SEQRES 29 A 722 GLY ILE ASN SER CYS SER ASP ARG GLY CYS ASP THR GLY SEQRES 30 A 722 HIS LEU ALA MET GLY TRP GLY SER GLY THR ALA ASP PHE SEQRES 31 A 722 PRO TYR LEU VAL ALA PRO LEU ASP ALA ILE THR PRO LEU SEQRES 32 A 722 ALA GLN ALA GLN GLY THR LYS LEU VAL LEU SER THR THR SEQRES 33 A 722 ASP SER THR SER ALA ALA ALA SER ALA ALA ALA ALA ALA SEQRES 34 A 722 GLU THR ALA ILE VAL PHE ILE THR ALA ASP SER GLY GLU SEQRES 35 A 722 GLY TYR ILE THR VAL ASP GLY GLN LEU GLY ASP ARG ASN SEQRES 36 A 722 SER LEU ALA PRO TRP ASN ASN GLY THR ALA LEU VAL GLN SEQRES 37 A 722 ALA VAL ALA SER ALA SER LYS ASN VAL ILE VAL VAL ILE SEQRES 38 A 722 ASN SER VAL GLY PRO LEU ILE LEU GLU ASP ILE LEU ALA SEQRES 39 A 722 LEU SER SER VAL LYS ALA ILE VAL TRP ALA GLY VAL SER SEQRES 40 A 722 GLY GLN GLU SER GLY ASN GLY LEU ALA ASP ILE LEU TYR SEQRES 41 A 722 GLY SER VAL SER PRO SER GLY LYS LEU PRO TYR THR ILE SEQRES 42 A 722 ALA LYS GLN ALA SER ASP TYR GLY THR ALA ILE VAL PRO SEQRES 43 A 722 GLY ASP ASP ASN PHE PRO GLU GLY LEU PHE VAL ASP TYR SEQRES 44 A 722 ARG HIS PHE ASP GLN ALA ASN ILE GLN PRO ARG PHE GLU SEQRES 45 A 722 PHE GLY TYR GLY LEU SER TYR THR THR PHE GLN TYR SER SEQRES 46 A 722 GLN LEU THR ALA LYS TYR SER ASP THR SER ALA GLY SER SEQRES 47 A 722 SER THR LEU ALA PRO GLY GLY PRO LYS GLY LEU TYR ASP SEQRES 48 A 722 ILE VAL ALA THR VAL THR ALA LYS VAL THR ASN SER GLY SEQRES 49 A 722 THR VAL SER GLY ALA GLU VAL ALA GLN LEU TYR ILE GLY SEQRES 50 A 722 LEU PRO GLY SER ALA PRO ALA SER PRO PRO LYS GLN LEU SEQRES 51 A 722 ARG GLY PHE ASP LYS ILE SER LEU LYS PRO GLY LYS SER SEQRES 52 A 722 GLY THR VAL THR PHE ASN LEU ARG ARG LYS ASP LEU SER SEQRES 53 A 722 TYR TRP ASP THR ALA SER ALA GLN TRP VAL THR PRO THR SEQRES 54 A 722 SER GLY GLU PHE SER LEU TYR VAL GLY ALA SER SER ARG SEQRES 55 A 722 ASP ILE ARG LEU GLN GLY SER LEU LYS CYS SER GLY GLN SEQRES 56 A 722 GLY ILE ARG LYS GLY GLY HIS MODRES 6JXG NAG A 801 NAG -D MODRES 6JXG NAG A 802 NAG -D MODRES 6JXG NAG A 803 NAG -D MODRES 6JXG MAN A 804 MAN -D HET NAG A 801 14 HET NAG A 802 14 HET NAG A 803 14 HET MAN A 804 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 5 MAN C6 H12 O6 FORMUL 6 HOH *526(H2 O) HELIX 1 AA1 TRP A 6 ALA A 18 1 13 HELIX 2 AA2 SER A 21 THR A 30 1 10 HELIX 3 AA3 VAL A 46 GLY A 50 5 5 HELIX 4 AA4 THR A 74 SER A 80 1 7 HELIX 5 AA5 ASP A 83 LEU A 101 1 19 HELIX 6 AA6 ARG A 122 GLY A 126 5 5 HELIX 7 AA7 ASP A 130 ALA A 148 1 19 HELIX 8 AA8 ASP A 174 LEU A 181 1 8 HELIX 9 AA9 LEU A 183 ALA A 192 1 10 HELIX 10 AB1 CYS A 210 ASN A 212 5 3 HELIX 11 AB2 ASN A 213 ILE A 218 1 6 HELIX 12 AB3 THR A 238 GLY A 246 1 9 HELIX 13 AB4 GLY A 264 ASN A 273 1 10 HELIX 14 AB5 ALA A 277 VAL A 295 1 19 HELIX 15 AB6 HIS A 322 GLY A 333 1 12 HELIX 16 AB7 ASN A 341 ALA A 343 5 3 HELIX 17 AB8 GLN A 357 ILE A 360 5 4 HELIX 18 AB9 CYS A 369 GLY A 373 5 5 HELIX 19 AC1 ALA A 395 GLN A 407 1 13 HELIX 20 AC2 SER A 418 ALA A 428 1 11 HELIX 21 AC3 ASN A 462 SER A 472 1 11 HELIX 22 AC4 LEU A 489 ALA A 494 1 6 HELIX 23 AC5 GLU A 510 TYR A 520 1 11 HELIX 24 AC6 GLN A 536 GLY A 541 5 6 HELIX 25 AC7 ASP A 558 ALA A 565 1 8 HELIX 26 AC8 GLY A 608 TYR A 610 5 3 HELIX 27 AC9 LYS A 673 SER A 676 5 4 SHEET 1 AA1 6 GLY A 41 ASN A 42 0 SHEET 2 AA1 6 CYS A 55 GLN A 57 -1 O TYR A 56 N GLY A 41 SHEET 3 AA1 6 VAL A 105 GLN A 106 1 O VAL A 105 N GLN A 57 SHEET 4 AA1 6 GLN A 151 PHE A 157 1 O GLN A 151 N GLN A 106 SHEET 5 AA1 6 SER A 196 CYS A 199 1 O MET A 198 N PHE A 157 SHEET 6 AA1 6 PHE A 228 SER A 231 1 O VAL A 230 N ILE A 197 SHEET 1 AA2 3 SER A 170 SER A 171 0 SHEET 2 AA2 3 LYS A 203 PHE A 204 1 O LYS A 203 N SER A 171 SHEET 3 AA2 3 THR A 207 TYR A 208 -1 O THR A 207 N PHE A 204 SHEET 1 AA3 6 VAL A 335 ASN A 339 0 SHEET 2 AA3 6 VAL A 498 TRP A 503 -1 O TRP A 503 N VAL A 335 SHEET 3 AA3 6 VAL A 477 SER A 483 1 N VAL A 479 O ALA A 500 SHEET 4 AA3 6 THR A 431 ALA A 438 1 N ALA A 432 O ILE A 478 SHEET 5 AA3 6 SER A 351 ILE A 355 1 N ALA A 353 O ILE A 433 SHEET 6 AA3 6 LYS A 410 SER A 414 1 O SER A 414 N ILE A 354 SHEET 1 AA4 2 THR A 446 VAL A 447 0 SHEET 2 AA4 2 GLN A 450 LEU A 451 -1 O GLN A 450 N VAL A 447 SHEET 1 AA5 3 PHE A 582 TYR A 591 0 SHEET 2 AA5 3 ILE A 612 ASN A 622 -1 O LYS A 619 N SER A 585 SHEET 3 AA5 3 SER A 663 ARG A 671 -1 O PHE A 668 N VAL A 616 SHEET 1 AA6 2 LEU A 601 ALA A 602 0 SHEET 2 AA6 2 GLY A 605 PRO A 606 -1 O GLY A 605 N ALA A 602 SHEET 1 AA7 4 GLN A 649 LEU A 658 0 SHEET 2 AA7 4 GLY A 628 GLY A 637 -1 N LEU A 634 O ARG A 651 SHEET 3 AA7 4 GLU A 692 GLY A 698 -1 O SER A 694 N GLY A 637 SHEET 4 AA7 4 ILE A 704 LYS A 711 -1 O LEU A 710 N PHE A 693 SHEET 1 AA8 2 TYR A 677 ASP A 679 0 SHEET 2 AA8 2 GLN A 684 VAL A 686 -1 O VAL A 686 N TYR A 677 SSBOND 1 CYS A 39 CYS A 55 1555 1555 2.04 SSBOND 2 CYS A 199 CYS A 210 1555 1555 2.05 SSBOND 3 CYS A 369 CYS A 374 1555 1555 2.18 LINK ND2 ASN A 68 C1 NAG A 801 1555 1555 1.44 LINK ND2 ASN A 205 C1 NAG A 803 1555 1555 1.42 LINK ND2 ASN A 273 C1 NAG A 802 1555 1555 1.44 LINK OG1 THR A 431 C1 MAN A 804 1555 1555 1.41 CISPEP 1 ASP A 58 GLY A 59 0 -4.07 CISPEP 2 GLY A 108 PRO A 109 0 6.03 CISPEP 3 GLY A 112 PRO A 113 0 6.39 CISPEP 4 LYS A 155 HIS A 156 0 -2.46 CISPEP 5 PHE A 157 ILE A 158 0 4.03 CISPEP 6 MET A 251 PRO A 252 0 -4.74 CISPEP 7 LEU A 344 PRO A 345 0 2.94 CRYST1 67.774 77.661 123.481 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008098 0.00000