HEADER RNA 24-APR-19 6JXM TITLE CRYSTAL STRUCTURE OF PHI29 PRNA DOMAIN II COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (97-MER); COMPND 3 CHAIN: B; COMPND 4 SYNONYM: PRNA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS VIRUS PHI29; SOURCE 3 ORGANISM_TAXID: 10756; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHI29 BACTERIOPHAGE, RNA EXPDTA X-RAY DIFFRACTION AUTHOR R.CAI,I.R.PRICE,F.DING,F.WU,T.CHEN,Y.ZHANG,G.LIU,P.J.JARDINE,C.LU, AUTHOR 2 A.KE REVDAT 3 22-NOV-23 6JXM 1 LINK REVDAT 2 09-OCT-19 6JXM 1 JRNL REVDAT 1 21-AUG-19 6JXM 0 JRNL AUTH R.CAI,I.R.PRICE,F.DING,F.WU,T.CHEN,Y.ZHANG,G.LIU, JRNL AUTH 2 P.J.JARDINE,C.LU,A.KE JRNL TITL ATP/ADP MODULATES GP16-PRNA CONFORMATIONAL CHANGE IN THE JRNL TITL 2 PHI29 DNA PACKAGING MOTOR. JRNL REF NUCLEIC ACIDS RES. V. 47 9818 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31396619 JRNL DOI 10.1093/NAR/GKZ692 REMARK 2 REMARK 2 RESOLUTION. 3.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 101.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 9296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1034 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 570 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.4040 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 2077 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 152.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.55000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.436 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.373 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.778 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.923 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2323 ; 0.006 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 951 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3619 ; 1.209 ; 1.274 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2309 ; 1.561 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 388 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1168 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 525 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2322 ;14.001 ;16.105 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2323 ;14.000 ;16.109 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3619 ;21.038 ;24.169 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3184 ;22.941 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3185 ;22.938 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JXM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300011952. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.606 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10506 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.320 REMARK 200 RESOLUTION RANGE LOW (A) : 101.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.06700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4MGM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12 MM SPERMINE, 5 MM COBALT REMARK 280 HEXAMINE, 10%(+/-)-2-METHYL-2,4-PENTANEDIOL (MPD), 62 MM REMARK 280 POTASSIUM CHLORIDE, 30 MM BARIUM CHLORIDE, 40 MM PH 6 NA REMARK 280 CACODYLATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 60.08900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 60.08900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 93.74700 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 60.08900 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 60.08900 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 93.74700 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 60.08900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 60.08900 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 93.74700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 60.08900 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 60.08900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 93.74700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 60.08900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 60.08900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 93.74700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 60.08900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 60.08900 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 93.74700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 60.08900 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 60.08900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 93.74700 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 60.08900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 60.08900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 93.74700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U B 60 OP1 REMARK 470 C B 61 OP1 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 110 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 7 O6 REMARK 620 2 G B 70 O6 63.3 REMARK 620 3 G B 85 O6 118.7 60.0 REMARK 620 4 U B 86 O4 79.1 61.2 54.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 115 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A B 9 OP1 REMARK 620 2 A B 9 OP2 49.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 121 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 16 O2 REMARK 620 2 U B 16 O4 87.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 41 OP2 REMARK 620 2 C B 42 O4' 130.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 108 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 50 O4 REMARK 620 2 G B 51 O6 52.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 112 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 74 O6 REMARK 620 2 A B 79 O2' 79.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BA B 113 BA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 75 O4 REMARK 620 2 U B 76 O4 57.3 REMARK 620 3 A B 79 OP2 77.3 64.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 114 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 115 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 116 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 117 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 120 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 121 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BA B 122 DBREF 6JXM B 1 97 PDB 6JXM 6JXM 1 97 SEQRES 1 B 97 G C G G A A G U A G U U C SEQRES 2 B 97 A G U G G U A G A A C A C SEQRES 3 B 97 C C G A C A G A C G A A G SEQRES 4 B 97 C G C U A A A A C G U G G SEQRES 5 B 97 G A U U C U G U C G G G G SEQRES 6 B 97 G G U C G C G G G U U C G SEQRES 7 B 97 A G U C C C G U C U U C C SEQRES 8 B 97 G C U C C A HET MG B 101 1 HET MG B 102 1 HET MG B 103 1 HET MG B 104 1 HET MG B 105 1 HET MG B 106 1 HET MG B 107 1 HET BA B 108 1 HET BA B 109 1 HET BA B 110 1 HET BA B 111 1 HET BA B 112 1 HET BA B 113 1 HET BA B 114 1 HET BA B 115 1 HET BA B 116 1 HET BA B 117 1 HET BA B 118 1 HET BA B 119 1 HET BA B 120 1 HET BA B 121 1 HET BA B 122 1 HETNAM MG MAGNESIUM ION HETNAM BA BARIUM ION FORMUL 2 MG 7(MG 2+) FORMUL 9 BA 15(BA 2+) LINK O6 G B 7 BA BA B 110 1555 1555 3.32 LINK OP1 A B 9 BA BA B 115 1555 1555 3.33 LINK OP2 A B 9 BA BA B 115 1555 1555 2.79 LINK OP1 A B 9 BA BA B 120 1555 1555 3.24 LINK O2 U B 16 BA BA B 121 1555 2655 3.14 LINK O4 U B 16 BA BA B 121 1555 2655 3.40 LINK OP1 A B 37 BA BA B 118 1555 1555 2.97 LINK OP2 G B 41 MG MG B 103 1555 1555 2.41 LINK O4' C B 42 MG MG B 103 1555 1555 2.84 LINK OP1 A B 44 BA BA B 116 1555 1555 3.42 LINK O4 U B 50 BA BA B 108 1555 1555 2.86 LINK O6 G B 51 BA BA B 108 1555 1555 2.98 LINK O6 G B 66 BA BA B 109 1555 1555 3.40 LINK O6 G B 70 BA BA B 110 1555 1555 3.33 LINK O6 G B 74 BA BA B 112 1555 1555 3.26 LINK O4 U B 75 BA BA B 113 1555 1555 3.20 LINK O4 U B 76 BA BA B 111 1555 1555 3.20 LINK O4 U B 76 BA BA B 113 1555 1555 3.12 LINK O2' A B 79 BA BA B 112 1555 1555 3.37 LINK OP2 A B 79 BA BA B 113 1555 1555 3.00 LINK O6 G B 85 BA BA B 110 1555 1555 3.33 LINK O4 U B 86 BA BA B 110 1555 1555 3.32 SITE 1 AC1 2 G B 7 G B 15 SITE 1 AC2 1 G B 53 SITE 1 AC3 3 G B 41 C B 42 U B 43 SITE 1 AC4 2 G B 65 G B 66 SITE 1 AC5 2 G B 3 G B 4 SITE 1 AC6 2 G B 66 G B 67 SITE 1 AC7 2 U B 50 G B 51 SITE 1 AC8 1 G B 66 SITE 1 AC9 4 G B 7 G B 70 G B 85 U B 86 SITE 1 AD1 1 U B 76 SITE 1 AD2 3 G B 73 G B 74 A B 79 SITE 1 AD3 3 U B 75 U B 76 A B 79 SITE 1 AD4 1 G B 17 SITE 1 AD5 1 A B 9 SITE 1 AD6 1 A B 44 SITE 1 AD7 1 G B 52 SITE 1 AD8 1 A B 37 SITE 1 AD9 1 A B 9 SITE 1 AE1 1 U B 16 SITE 1 AE2 2 A B 20 G B 80 CRYST1 120.178 120.178 187.494 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008321 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008321 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005334 0.00000