HEADER LYASE 25-APR-19 6JY1 TITLE CRYSTAL STRUCTURE OF A GROUP II PYRIDOXAL DEPENDENT DECARBOXYLASE, TITLE 2 LLP-BOUND FORM FROM METHANOCALDOCOCCUS JANNASCHII AT 1.72 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-TYROSINE/L-ASPARTATE DECARBOXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TDC/ADC; COMPND 5 EC: 4.1.1.11,4.1.1.25; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII DSM 2661; SOURCE 3 ORGANISM_COMMON: METHANOCOCCUS JANNASCHII; SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 STRAIN: DSM 2661; SOURCE 6 ATCC: ATCC 43067; SOURCE 7 GENE: MFNA, MJ0050; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI B; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 37762; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: B; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PSPEEDET KEYWDS PLP DEPENDENT DECARBOXYLASE, CATALYTIC DOMAIN, MODELS, MOLECULAR, KEYWDS 2 PROTEIN CONFORMATION, LLP, TYROSINE, TYROSINE DECARBOXYLASE, KEYWDS 3 STRUCTURE-ACTIVITY RELATIONSHIP, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MANOJ,S.C.GAYATHRI REVDAT 3 22-NOV-23 6JY1 1 REMARK REVDAT 2 13-NOV-19 6JY1 1 JRNL REVDAT 1 30-OCT-19 6JY1 0 JRNL AUTH S.CHELLAM GAYATHRI,N.MANOJ JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF INTERNAL ALDIMINE JRNL TITL 2 FORMATION AND CATALYTIC LOOP DYNAMICS IN AN ARCHAEAL GROUP JRNL TITL 3 II DECARBOXYLASE. JRNL REF J.STRUCT.BIOL. V. 208 137 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31445086 JRNL DOI 10.1016/J.JSB.2019.08.009 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 64440 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7319 - 4.8896 0.99 2887 142 0.1837 0.1910 REMARK 3 2 4.8896 - 3.8816 1.00 2762 142 0.1280 0.1537 REMARK 3 3 3.8816 - 3.3912 1.00 2711 149 0.1351 0.1913 REMARK 3 4 3.3912 - 3.0812 1.00 2697 136 0.1624 0.1902 REMARK 3 5 3.0812 - 2.8604 1.00 2690 142 0.1669 0.2037 REMARK 3 6 2.8604 - 2.6918 1.00 2685 130 0.1595 0.1572 REMARK 3 7 2.6918 - 2.5570 1.00 2679 132 0.1533 0.1773 REMARK 3 8 2.5570 - 2.4457 1.00 2631 147 0.1490 0.1735 REMARK 3 9 2.4457 - 2.3515 1.00 2651 143 0.1581 0.1879 REMARK 3 10 2.3515 - 2.2704 1.00 2660 137 0.1565 0.1668 REMARK 3 11 2.2704 - 2.1994 1.00 2656 131 0.1624 0.1653 REMARK 3 12 2.1994 - 2.1365 1.00 2655 125 0.1515 0.1681 REMARK 3 13 2.1365 - 2.0803 1.00 2664 121 0.1702 0.1713 REMARK 3 14 2.0803 - 2.0295 1.00 2636 139 0.1739 0.2077 REMARK 3 15 2.0295 - 1.9834 1.00 2618 148 0.1692 0.1853 REMARK 3 16 1.9834 - 1.9412 1.00 2619 147 0.1760 0.2151 REMARK 3 17 1.9412 - 1.9023 1.00 2611 143 0.2168 0.2578 REMARK 3 18 1.9023 - 1.8664 1.00 2644 135 0.2071 0.2456 REMARK 3 19 1.8664 - 1.8331 1.00 2620 150 0.2104 0.2461 REMARK 3 20 1.8331 - 1.8020 1.00 2614 135 0.2102 0.2343 REMARK 3 21 1.8020 - 1.7730 1.00 2642 139 0.2294 0.2457 REMARK 3 22 1.7730 - 1.7457 1.00 2603 138 0.2426 0.2421 REMARK 3 23 1.7457 - 1.7200 1.00 2614 140 0.2567 0.3166 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3224 REMARK 3 ANGLE : 0.992 4354 REMARK 3 CHIRALITY : 0.060 481 REMARK 3 PLANARITY : 0.006 551 REMARK 3 DIHEDRAL : 9.469 1946 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JY1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-APR-19. REMARK 100 THE DEPOSITION ID IS D_1300011953. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM V7.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64532 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 51.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.98400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3F9T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE PH 5.4, 0.2M REMARK 280 SODIUM POTASSIUM TARTARATE, 2.0M AMMONIUM SULPHATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.14000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.29000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 91.71000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.29000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.57000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.29000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.29000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 91.71000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.29000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.29000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.57000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.14000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -159.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 541 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 THR A 275 REMARK 465 GLU A 276 REMARK 465 THR A 277 REMARK 465 ARG A 278 REMARK 465 ASP A 396 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 2 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 GLU A 153 CD OE1 OE2 REMARK 470 GLU A 182 OE1 OE2 REMARK 470 ARG A 265 CZ NH1 NH2 REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 GLU A 345 CG CD OE1 OE2 REMARK 470 LYS A 352 CG CD CE NZ REMARK 470 LYS A 353 CD CE NZ REMARK 470 CYS A 366 CB SG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 54 51.11 -96.08 REMARK 500 VAL A 91 -162.42 -110.26 REMARK 500 PHE A 230 -4.58 -150.79 REMARK 500 ASP A 231 -161.39 -105.09 REMARK 500 LLP A 245 -102.43 -94.49 REMARK 500 LEU A 337 -165.91 -110.38 REMARK 500 ASP A 346 39.50 -96.32 REMARK 500 ASN A 365 -64.14 -105.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 DBREF 6JY1 A 1 396 UNP Q60358 MFNA_METJA 1 396 SEQADV 6JY1 MET A -18 UNP Q60358 INITIATING METHIONINE SEQADV 6JY1 GLY A -17 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 SER A -16 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 ASP A -15 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 LYS A -14 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 ILE A -13 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 HIS A -12 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 HIS A -11 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 HIS A -10 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 HIS A -9 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 HIS A -8 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 HIS A -7 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 GLU A -6 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 ASN A -5 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 LEU A -4 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 TYR A -3 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 PHE A -2 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 GLN A -1 UNP Q60358 EXPRESSION TAG SEQADV 6JY1 GLY A 0 UNP Q60358 EXPRESSION TAG SEQRES 1 A 415 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 415 ASN LEU TYR PHE GLN GLY MET ARG ASN MET GLN GLU LYS SEQRES 3 A 415 GLY VAL SER GLU LYS GLU ILE LEU GLU GLU LEU LYS LYS SEQRES 4 A 415 TYR ARG SER LEU ASP LEU LYS TYR GLU ASP GLY ASN ILE SEQRES 5 A 415 PHE GLY SER MET CYS SER ASN VAL LEU PRO ILE THR ARG SEQRES 6 A 415 LYS ILE VAL ASP ILE PHE LEU GLU THR ASN LEU GLY ASP SEQRES 7 A 415 PRO GLY LEU PHE LYS GLY THR LYS LEU LEU GLU GLU LYS SEQRES 8 A 415 ALA VAL ALA LEU LEU GLY SER LEU LEU ASN ASN LYS ASP SEQRES 9 A 415 ALA TYR GLY HIS ILE VAL SER GLY GLY THR GLU ALA ASN SEQRES 10 A 415 LEU MET ALA LEU ARG CYS ILE LYS ASN ILE TRP ARG GLU SEQRES 11 A 415 LYS ARG ARG LYS GLY LEU SER LYS ASN GLU HIS PRO LYS SEQRES 12 A 415 ILE ILE VAL PRO ILE THR ALA HIS PHE SER PHE GLU LYS SEQRES 13 A 415 GLY ARG GLU MET MET ASP LEU GLU TYR ILE TYR ALA PRO SEQRES 14 A 415 ILE LYS GLU ASP TYR THR ILE ASP GLU LYS PHE VAL LYS SEQRES 15 A 415 ASP ALA VAL GLU ASP TYR ASP VAL ASP GLY ILE ILE GLY SEQRES 16 A 415 ILE ALA GLY THR THR GLU LEU GLY THR ILE ASP ASN ILE SEQRES 17 A 415 GLU GLU LEU SER LYS ILE ALA LYS GLU ASN ASN ILE TYR SEQRES 18 A 415 ILE HIS VAL ASP ALA ALA PHE GLY GLY LEU VAL ILE PRO SEQRES 19 A 415 PHE LEU ASP ASP LYS TYR LYS LYS LYS GLY VAL ASN TYR SEQRES 20 A 415 LYS PHE ASP PHE SER LEU GLY VAL ASP SER ILE THR ILE SEQRES 21 A 415 ASP PRO HIS LLP MET GLY HIS CYS PRO ILE PRO SER GLY SEQRES 22 A 415 GLY ILE LEU PHE LYS ASP ILE GLY TYR LYS ARG TYR LEU SEQRES 23 A 415 ASP VAL ASP ALA PRO TYR LEU THR GLU THR ARG GLN ALA SEQRES 24 A 415 THR ILE LEU GLY THR ARG VAL GLY PHE GLY GLY ALA CYS SEQRES 25 A 415 THR TYR ALA VAL LEU ARG TYR LEU GLY ARG GLU GLY GLN SEQRES 26 A 415 ARG LYS ILE VAL ASN GLU CYS MET GLU ASN THR LEU TYR SEQRES 27 A 415 LEU TYR LYS LYS LEU LYS GLU ASN ASN PHE LYS PRO VAL SEQRES 28 A 415 ILE GLU PRO ILE LEU ASN ILE VAL ALA ILE GLU ASP GLU SEQRES 29 A 415 ASP TYR LYS GLU VAL CYS LYS LYS LEU ARG ASP ARG GLY SEQRES 30 A 415 ILE TYR VAL SER VAL CYS ASN CYS VAL LYS ALA LEU ARG SEQRES 31 A 415 ILE VAL VAL MET PRO HIS ILE LYS ARG GLU HIS ILE ASP SEQRES 32 A 415 ASN PHE ILE GLU ILE LEU ASN SER ILE LYS ARG ASP MODRES 6JY1 LLP A 245 LYS MODIFIED RESIDUE HET LLP A 245 41 HET SO4 A 401 5 HET SO4 A 402 5 HET SO4 A 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET GOL A 406 14 HET GOL A 407 11 HET GOL A 408 11 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 10 HOH *273(H2 O) HELIX 1 AA1 SER A 10 ASP A 25 1 16 HELIX 2 AA2 LYS A 27 GLY A 31 5 5 HELIX 3 AA3 PRO A 43 LEU A 53 1 11 HELIX 4 AA4 ASP A 59 LEU A 62 5 4 HELIX 5 AA5 PHE A 63 LEU A 81 1 19 HELIX 6 AA6 GLY A 93 LYS A 115 1 23 HELIX 7 AA7 HIS A 132 ASP A 143 1 12 HELIX 8 AA8 ASP A 158 TYR A 169 1 12 HELIX 9 AA9 ASN A 188 ASN A 200 1 13 HELIX 10 AB1 PHE A 209 LEU A 217 5 9 HELIX 11 AB2 ASP A 218 LYS A 222 5 5 HELIX 12 AB3 ASP A 231 GLY A 235 5 5 HELIX 13 AB4 ASP A 260 ASP A 268 5 9 HELIX 14 AB5 GLY A 288 ASN A 327 1 40 HELIX 15 AB6 ASP A 346 ARG A 357 1 12 HELIX 16 AB7 LYS A 379 LYS A 394 1 16 SHEET 1 AA1 7 TYR A 87 VAL A 91 0 SHEET 2 AA1 7 GLY A 254 PHE A 258 -1 O PHE A 258 N TYR A 87 SHEET 3 AA1 7 SER A 238 ILE A 241 -1 N ILE A 239 O LEU A 257 SHEET 4 AA1 7 TYR A 202 ASP A 206 1 N VAL A 205 O SER A 238 SHEET 5 AA1 7 GLY A 173 ILE A 177 1 N GLY A 176 O ASP A 206 SHEET 6 AA1 7 LYS A 124 PRO A 128 1 N ILE A 126 O GLY A 173 SHEET 7 AA1 7 GLU A 145 ALA A 149 1 O GLU A 145 N ILE A 125 SHEET 1 AA2 3 ILE A 339 GLU A 343 0 SHEET 2 AA2 3 ALA A 369 VAL A 373 -1 O ILE A 372 N VAL A 340 SHEET 3 AA2 3 SER A 362 VAL A 363 -1 N SER A 362 O ARG A 371 LINK C HIS A 244 N LLP A 245 1555 1555 1.34 LINK C LLP A 245 N MET A 246 1555 1555 1.32 CISPEP 1 ILE A 251 PRO A 252 0 -1.24 SITE 1 AC1 5 ASN A 316 LYS A 379 ARG A 380 HOH A 504 SITE 2 AC1 5 HOH A 516 SITE 1 AC2 5 LYS A 12 ASP A 164 ASP A 168 HOH A 545 SITE 2 AC2 5 HOH A 617 SITE 1 AC3 5 ILE A 333 GLU A 334 HOH A 530 HOH A 558 SITE 2 AC3 5 HOH A 639 SITE 1 AC4 3 LYS A 223 LYS A 224 HOH A 583 SITE 1 AC5 4 SER A 10 GLU A 11 TYR A 169 TYR A 300 SITE 1 AC6 4 ASP A 260 GLY A 262 TYR A 263 GOL A 408 SITE 1 AC7 6 LYS A 112 LEU A 117 SER A 118 ASN A 120 SITE 2 AC7 6 ASP A 170 ASP A 172 SITE 1 AC8 9 ASN A 200 ILE A 201 TYR A 202 ASP A 237 SITE 2 AC8 9 GOL A 406 HOH A 501 HOH A 537 HOH A 571 SITE 3 AC8 9 HOH A 675 CRYST1 98.580 98.580 122.280 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008178 0.00000