HEADER TRANSCRIPTION 26-APR-19 6JYI TITLE CRYSTAL STRUCTURE OF THE PADR-LIKE TRANSCRIPTIONAL REGULATOR BC1756 TITLE 2 FROM BACILLUS CEREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR PADR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS (STRAIN ATCC 14579 / DSM 31 / SOURCE 3 JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711); SOURCE 4 ORGANISM_TAXID: 226900; SOURCE 5 STRAIN: ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / SOURCE 6 NRRL B-3711; SOURCE 7 GENE: BC_1756; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSCRIPTION FACTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.H.KIM,S.C.PARK,K.C.LEE,W.S.SONG,S.I.YOON REVDAT 3 30-OCT-24 6JYI 1 REMARK REVDAT 2 10-JUL-19 6JYI 1 JRNL REVDAT 1 26-JUN-19 6JYI 0 JRNL AUTH T.H.KIM,S.C.PARK,K.C.LEE,W.S.SONG,S.I.YOON JRNL TITL STRUCTURAL AND DNA-BINDING STUDIES OF THE PADR-LIKE JRNL TITL 2 TRANSCRIPTIONAL REGULATOR BC1756 FROM BACILLUS CEREUS. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 515 607 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 31178139 JRNL DOI 10.1016/J.BBRC.2019.05.141 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 29372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1562 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2092 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2784 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.165 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.103 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.845 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2852 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2018 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3825 ; 1.418 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4904 ; 0.864 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 339 ; 4.829 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;30.566 ;24.203 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 557 ;15.038 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;20.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3102 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 603 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1682 ; 0.823 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 693 ; 0.221 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2710 ; 1.506 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1170 ; 2.512 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1113 ; 3.974 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 33 6 REMARK 3 1 B 1 B 33 6 REMARK 3 2 A 36 A 59 6 REMARK 3 2 B 36 B 59 6 REMARK 3 3 A 68 A 89 6 REMARK 3 3 B 68 B 89 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1049 ; 0.76 ; 5.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1049 ; 2.44 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 90 A 127 6 REMARK 3 1 B 90 B 127 6 REMARK 3 2 A 145 A 200 6 REMARK 3 2 B 145 B 200 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 2 A (A): 844 ; 0.38 ; 5.00 REMARK 3 LOOSE THERMAL 2 B (A**2): 844 ; 2.73 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 170 REMARK 3 ORIGIN FOR THE GROUP (A): 48.381 34.731 9.594 REMARK 3 T TENSOR REMARK 3 T11: 0.2936 T22: 0.2347 REMARK 3 T33: 0.2950 T12: 0.0090 REMARK 3 T13: -0.1129 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 3.0979 L22: 0.8626 REMARK 3 L33: 1.5129 L12: -1.5162 REMARK 3 L13: -1.5227 L23: 0.5976 REMARK 3 S TENSOR REMARK 3 S11: -0.2067 S12: -0.4782 S13: 0.4089 REMARK 3 S21: 0.3109 S22: 0.2095 S23: -0.3404 REMARK 3 S31: 0.0166 S32: 0.2583 S33: -0.0029 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): 24.820 50.356 18.961 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.0600 REMARK 3 T33: 0.0591 T12: -0.0259 REMARK 3 T13: 0.0121 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 2.8784 L22: 1.3116 REMARK 3 L33: 6.2908 L12: 0.2986 REMARK 3 L13: -0.8407 L23: 0.2381 REMARK 3 S TENSOR REMARK 3 S11: 0.1183 S12: 0.0296 S13: 0.0829 REMARK 3 S21: 0.3506 S22: 0.0514 S23: 0.0158 REMARK 3 S31: -0.0150 S32: -0.2036 S33: -0.1697 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 90 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 47.0090 49.8360 0.5570 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.0961 REMARK 3 T33: 0.2248 T12: -0.0012 REMARK 3 T13: -0.0618 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 1.9357 L22: 2.0765 REMARK 3 L33: 1.2451 L12: -0.9660 REMARK 3 L13: -0.8613 L23: 0.6168 REMARK 3 S TENSOR REMARK 3 S11: 0.0362 S12: 0.1110 S13: 0.4794 REMARK 3 S21: 0.0543 S22: -0.0100 S23: -0.0638 REMARK 3 S31: -0.1873 S32: -0.0296 S33: -0.0262 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6JYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300011973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31084 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM CITRATE, AMMONIUM REMARK 280 DIHYDROGEN PHOSPHATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.34100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.33600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.34100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.33600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 61 REMARK 465 GLY A 62 REMARK 465 ALA A 171 REMARK 465 LYS A 172 REMARK 465 GLU A 173 REMARK 465 ASN A 174 REMARK 465 ASN A 175 REMARK 465 LYS A 176 REMARK 465 THR A 177 REMARK 465 GLU A 178 REMARK 465 GLU A 179 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 ALA B -3 REMARK 465 LYS B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 MSE B 1 REMARK 465 MSE B 59 REMARK 465 GLN B 60 REMARK 465 GLU B 61 REMARK 465 GLY B 62 REMARK 465 LYS B 63 REMARK 465 PRO B 64 REMARK 465 ASN B 65 REMARK 465 ASN B 174 REMARK 465 ASN B 175 REMARK 465 LYS B 176 REMARK 465 THR B 177 REMARK 465 GLU B 178 REMARK 465 GLU B 179 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 54 CG CD CE NZ REMARK 470 GLU A 56 OE1 OE2 REMARK 470 GLN A 84 CD OE1 NE2 REMARK 470 LYS A 112 CG CD CE NZ REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 GLU A 160 CD OE1 OE2 REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 VAL B 57 CG1 CG2 REMARK 470 VAL B 58 CG1 CG2 REMARK 470 LYS B 89 CD CE NZ REMARK 470 GLU B 160 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 137 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 MSE B 98 CG - SE - CE ANGL. DEV. = -20.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 32 -3.28 -140.68 REMARK 500 PHE A 33 65.56 -150.17 REMARK 500 SER A 106 -153.44 -104.73 REMARK 500 PHE B 32 12.91 -144.45 REMARK 500 SER B 106 -151.60 -109.39 REMARK 500 REMARK 500 REMARK: NULL DBREF 6JYI A 1 179 UNP Q81F45 Q81F45_BACCR 1 179 DBREF 6JYI B 1 179 UNP Q81F45 Q81F45_BACCR 1 179 SEQADV 6JYI GLY A -5 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI SER A -4 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI ALA A -3 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI LYS A -2 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI ASP A -1 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI PRO A 0 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI GLY B -5 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI SER B -4 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI ALA B -3 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI LYS B -2 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI ASP B -1 UNP Q81F45 EXPRESSION TAG SEQADV 6JYI PRO B 0 UNP Q81F45 EXPRESSION TAG SEQRES 1 A 185 GLY SER ALA LYS ASP PRO MSE LYS GLY ARG ASP VAL VAL SEQRES 2 A 185 LEU GLY LEU LEU MSE GLN LYS GLU LEU SER GLY TYR ASP SEQRES 3 A 185 ILE LYS ILE VAL PHE GLU ASP VAL PHE THR HIS PHE PHE SEQRES 4 A 185 ASP GLY SER PHE GLY MSE ILE TYR PRO THR LEU ARG GLN SEQRES 5 A 185 LEU GLU ASN GLU GLY LYS ILE LYS LYS GLU VAL VAL MSE SEQRES 6 A 185 GLN GLU GLY LYS PRO ASN LYS LYS MSE TYR PHE ILE THR SEQRES 7 A 185 ASP GLU GLY ARG GLU GLU PHE TYR GLN TYR MSE GLN THR SEQRES 8 A 185 PRO VAL GLU LYS ASP VAL LEU ARG SER ASP PHE LEU MSE SEQRES 9 A 185 ARG MSE TYR PHE GLY ASN TYR SER ASP ASP VAL THR ILE SEQRES 10 A 185 LYS LYS TRP ILE LYS ASP GLU ILE GLU ARG LYS GLU ALA SEQRES 11 A 185 TYR ILE ALA ASP LEU ARG LEU LYS TYR GLU LYS TRP ARG SEQRES 12 A 185 VAL GLY ILE THR PHE VAL GLU GLU ILE SER LEU ASP VAL SEQRES 13 A 185 GLY ILE ALA SER TYR SER ALA GLN VAL GLU THR LEU LYS SEQRES 14 A 185 LYS LYS LEU GLU GLU LEU GLU ALA LYS GLU ASN ASN LYS SEQRES 15 A 185 THR GLU GLU SEQRES 1 B 185 GLY SER ALA LYS ASP PRO MSE LYS GLY ARG ASP VAL VAL SEQRES 2 B 185 LEU GLY LEU LEU MSE GLN LYS GLU LEU SER GLY TYR ASP SEQRES 3 B 185 ILE LYS ILE VAL PHE GLU ASP VAL PHE THR HIS PHE PHE SEQRES 4 B 185 ASP GLY SER PHE GLY MSE ILE TYR PRO THR LEU ARG GLN SEQRES 5 B 185 LEU GLU ASN GLU GLY LYS ILE LYS LYS GLU VAL VAL MSE SEQRES 6 B 185 GLN GLU GLY LYS PRO ASN LYS LYS MSE TYR PHE ILE THR SEQRES 7 B 185 ASP GLU GLY ARG GLU GLU PHE TYR GLN TYR MSE GLN THR SEQRES 8 B 185 PRO VAL GLU LYS ASP VAL LEU ARG SER ASP PHE LEU MSE SEQRES 9 B 185 ARG MSE TYR PHE GLY ASN TYR SER ASP ASP VAL THR ILE SEQRES 10 B 185 LYS LYS TRP ILE LYS ASP GLU ILE GLU ARG LYS GLU ALA SEQRES 11 B 185 TYR ILE ALA ASP LEU ARG LEU LYS TYR GLU LYS TRP ARG SEQRES 12 B 185 VAL GLY ILE THR PHE VAL GLU GLU ILE SER LEU ASP VAL SEQRES 13 B 185 GLY ILE ALA SER TYR SER ALA GLN VAL GLU THR LEU LYS SEQRES 14 B 185 LYS LYS LEU GLU GLU LEU GLU ALA LYS GLU ASN ASN LYS SEQRES 15 B 185 THR GLU GLU MODRES 6JYI MSE A 1 MET MODIFIED RESIDUE MODRES 6JYI MSE A 12 MET MODIFIED RESIDUE MODRES 6JYI MSE A 39 MET MODIFIED RESIDUE MODRES 6JYI MSE A 59 MET MODIFIED RESIDUE MODRES 6JYI MSE A 68 MET MODIFIED RESIDUE MODRES 6JYI MSE A 83 MET MODIFIED RESIDUE MODRES 6JYI MSE A 98 MET MODIFIED RESIDUE MODRES 6JYI MSE A 100 MET MODIFIED RESIDUE MODRES 6JYI MSE B 12 MET MODIFIED RESIDUE MODRES 6JYI MSE B 39 MET MODIFIED RESIDUE MODRES 6JYI MSE B 68 MET MODIFIED RESIDUE MODRES 6JYI MSE B 83 MET MODIFIED RESIDUE MODRES 6JYI MSE B 98 MET MODIFIED RESIDUE MODRES 6JYI MSE B 100 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 12 8 HET MSE A 39 8 HET MSE A 59 8 HET MSE A 68 8 HET MSE A 83 8 HET MSE A 98 8 HET MSE A 100 8 HET MSE B 12 8 HET MSE B 39 8 HET MSE B 68 8 HET MSE B 83 8 HET MSE B 98 8 HET MSE B 100 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 HOH *141(H2 O) HELIX 1 AA1 MSE A 1 LYS A 14 1 14 HELIX 2 AA2 SER A 17 VAL A 28 1 12 HELIX 3 AA3 PHE A 29 PHE A 32 5 4 HELIX 4 AA4 SER A 36 GLY A 38 5 3 HELIX 5 AA5 MSE A 39 GLU A 50 1 12 HELIX 6 AA6 THR A 72 GLN A 84 1 13 HELIX 7 AA7 SER A 94 PHE A 102 1 9 HELIX 8 AA8 GLY A 103 SER A 106 5 4 HELIX 9 AA9 ASP A 107 ARG A 137 1 31 HELIX 10 AB1 THR A 141 GLU A 170 1 30 HELIX 11 AB2 GLY B 3 LYS B 14 1 12 HELIX 12 AB3 GLY B 18 VAL B 28 1 11 HELIX 13 AB4 PHE B 29 PHE B 32 5 4 HELIX 14 AB5 SER B 36 GLU B 50 1 15 HELIX 15 AB6 THR B 72 THR B 85 1 14 HELIX 16 AB7 SER B 94 PHE B 102 1 9 HELIX 17 AB8 GLY B 103 SER B 106 5 4 HELIX 18 AB9 ASP B 107 ARG B 137 1 31 HELIX 19 AC1 THR B 141 GLU B 173 1 33 SHEET 1 AA1 2 ILE A 53 VAL A 58 0 SHEET 2 AA1 2 LYS A 66 ILE A 71 -1 O MSE A 68 N GLU A 56 SHEET 1 AA2 2 VAL A 91 ARG A 93 0 SHEET 2 AA2 2 VAL B 91 ARG B 93 -1 O ARG B 93 N VAL A 91 SHEET 1 AA3 3 LEU B 16 SER B 17 0 SHEET 2 AA3 3 MSE B 68 ILE B 71 -1 O TYR B 69 N LEU B 16 SHEET 3 AA3 3 ILE B 53 GLU B 56 -1 N LYS B 54 O PHE B 70 LINK C PRO A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C LEU A 11 N MSE A 12 1555 1555 1.32 LINK C MSE A 12 N GLN A 13 1555 1555 1.33 LINK C GLY A 38 N MSE A 39 1555 1555 1.33 LINK C MSE A 39 N ILE A 40 1555 1555 1.34 LINK C VAL A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N GLN A 60 1555 1555 1.33 LINK C LYS A 67 N MSE A 68 1555 1555 1.34 LINK C MSE A 68 N TYR A 69 1555 1555 1.32 LINK C TYR A 82 N MSE A 83 1555 1555 1.34 LINK C MSE A 83 N GLN A 84 1555 1555 1.34 LINK C LEU A 97 N MSE A 98 1555 1555 1.34 LINK C MSE A 98 N ARG A 99 1555 1555 1.34 LINK C ARG A 99 N MSE A 100 1555 1555 1.34 LINK C MSE A 100 N TYR A 101 1555 1555 1.33 LINK C LEU B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N GLN B 13 1555 1555 1.33 LINK C GLY B 38 N MSE B 39 1555 1555 1.34 LINK C MSE B 39 N ILE B 40 1555 1555 1.33 LINK C LYS B 67 N MSE B 68 1555 1555 1.33 LINK C MSE B 68 N TYR B 69 1555 1555 1.34 LINK C TYR B 82 N MSE B 83 1555 1555 1.34 LINK C MSE B 83 N GLN B 84 1555 1555 1.33 LINK C LEU B 97 N MSE B 98 1555 1555 1.33 LINK C MSE B 98 N ARG B 99 1555 1555 1.33 LINK C ARG B 99 N MSE B 100 1555 1555 1.33 LINK C MSE B 100 N TYR B 101 1555 1555 1.33 CRYST1 60.682 132.672 49.249 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016479 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007537 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020305 0.00000