HEADER CYTOSOLIC PROTEIN 01-MAY-19 6JZD TITLE CRYSTAL STRUCTURE OF PEPTIDE-BOUND VASH2-SVBP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULINYL-TYR CARBOXYPEPTIDASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VASOHIBIN-2,VASOHIBIN-LIKE PROTEIN; COMPND 5 EC: 3.4.17.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SMALL VASOHIBIN-BINDING PROTEIN; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: COILED COIL DOMAIN-CONTAINING PROTEIN 23; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: GLU-GLY-GLU-GLU-TYR; COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: VASH2, VASHL; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SVBP, CCDC23; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 18 ORGANISM_TAXID: 10090 KEYWDS VASH2, SVBP, TUBULIN DETYROSINATION, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.CHEN,Y.LING,G.ZEYUAN,L.ZHU REVDAT 4 27-MAR-24 6JZD 1 REMARK REVDAT 3 07-AUG-19 6JZD 1 JRNL REVDAT 2 24-JUL-19 6JZD 1 JRNL REVDAT 1 17-JUL-19 6JZD 0 JRNL AUTH C.ZHOU,L.YAN,W.H.ZHANG,Z.LIU JRNL TITL STRUCTURAL BASIS OF TUBULIN DETYROSINATION BY VASH2/SVBP JRNL TITL 2 HETERODIMER. JRNL REF NAT COMMUN V. 10 3212 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31324789 JRNL DOI 10.1038/S41467-019-11277-8 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14RC3_3206: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1171 - 4.7399 0.99 2667 132 0.1646 0.1966 REMARK 3 2 4.7399 - 3.7629 0.99 2584 116 0.1533 0.1953 REMARK 3 3 3.7629 - 3.2874 0.99 2559 131 0.1902 0.2635 REMARK 3 4 3.2874 - 2.9869 1.00 2541 130 0.2144 0.2759 REMARK 3 5 2.9869 - 2.7728 1.00 2530 125 0.2094 0.2783 REMARK 3 6 2.7728 - 2.6094 1.00 2528 139 0.2291 0.2539 REMARK 3 7 2.6094 - 2.4787 0.98 2448 138 0.2511 0.3189 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2462 REMARK 3 ANGLE : 0.943 3315 REMARK 3 CHIRALITY : 0.053 348 REMARK 3 PLANARITY : 0.005 422 REMARK 3 DIHEDRAL : 16.104 1492 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 3.8197 22.1721 -9.8623 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.4845 REMARK 3 T33: 0.4206 T12: -0.0288 REMARK 3 T13: 0.0220 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.0739 L22: 3.0200 REMARK 3 L33: 2.0512 L12: -0.3446 REMARK 3 L13: -0.5696 L23: 0.3909 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: 0.0034 S13: 0.2797 REMARK 3 S21: -0.1396 S22: 0.0885 S23: -0.0598 REMARK 3 S31: -0.1830 S32: 0.0303 S33: -0.1645 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JZD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18801 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.75900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES, POTASSIUM CHLORIDE, AMMONIUM REMARK 280 SULPHATE, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.15850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.15850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.00200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.66950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.00200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.66950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.15850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.00200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.66950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.15850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.00200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.66950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 HIS A 9 REMARK 465 ARG A 10 REMARK 465 CYS A 11 REMARK 465 PRO A 12 REMARK 465 HIS A 13 REMARK 465 PRO A 14 REMARK 465 LYS A 15 REMARK 465 ILE A 16 REMARK 465 THR A 17 REMARK 465 LYS A 18 REMARK 465 GLY A 19 REMARK 465 THR A 20 REMARK 465 ARG A 21 REMARK 465 SER A 22 REMARK 465 ARG A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 HIS A 26 REMARK 465 ALA A 27 REMARK 465 ARG A 28 REMARK 465 PRO A 29 REMARK 465 VAL A 30 REMARK 465 SER A 31 REMARK 465 LEU A 32 REMARK 465 ALA A 33 REMARK 465 THR A 34 REMARK 465 SER A 35 REMARK 465 GLY A 36 REMARK 465 GLY A 37 REMARK 465 SER A 38 REMARK 465 GLU A 39 REMARK 465 GLU A 40 REMARK 465 GLU A 41 REMARK 465 ASP A 42 REMARK 465 LYS A 43 REMARK 465 ASP A 44 REMARK 465 GLY A 45 REMARK 465 GLY A 46 REMARK 465 VAL A 47 REMARK 465 LEU A 48 REMARK 465 ALA A 300 REMARK 465 HIS A 301 REMARK 465 SER A 302 REMARK 465 PRO A 303 REMARK 465 THR A 304 REMARK 465 GLN A 305 REMARK 465 VAL A 306 REMARK 465 ARG A 307 REMARK 465 SER A 308 REMARK 465 ARG A 309 REMARK 465 GLY A 310 REMARK 465 LYS A 311 REMARK 465 SER A 312 REMARK 465 LEU A 313 REMARK 465 SER A 314 REMARK 465 PRO A 315 REMARK 465 ARG A 316 REMARK 465 ARG A 317 REMARK 465 ARG A 318 REMARK 465 GLN A 319 REMARK 465 ALA A 320 REMARK 465 SER A 321 REMARK 465 PRO A 322 REMARK 465 PRO A 323 REMARK 465 ARG A 324 REMARK 465 ARG A 325 REMARK 465 LEU A 326 REMARK 465 GLY A 327 REMARK 465 ARG A 328 REMARK 465 ARG A 329 REMARK 465 ASP A 330 REMARK 465 LYS A 331 REMARK 465 SER A 332 REMARK 465 PRO A 333 REMARK 465 ALA A 334 REMARK 465 LEU A 335 REMARK 465 THR A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 LYS A 339 REMARK 465 VAL A 340 REMARK 465 ALA A 341 REMARK 465 ASP A 342 REMARK 465 LEU A 343 REMARK 465 GLY A 344 REMARK 465 THR A 345 REMARK 465 LEU A 346 REMARK 465 ASN A 347 REMARK 465 GLU A 348 REMARK 465 VAL A 349 REMARK 465 GLY A 350 REMARK 465 TYR A 351 REMARK 465 GLN A 352 REMARK 465 ILE A 353 REMARK 465 ARG A 354 REMARK 465 ILE A 355 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 ASP B -8 REMARK 465 GLU B -7 REMARK 465 VAL B -6 REMARK 465 ASP B -5 REMARK 465 ALA B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 PRO B 3 REMARK 465 PRO B 4 REMARK 465 ALA B 5 REMARK 465 ARG B 6 REMARK 465 LYS B 7 REMARK 465 GLU B 8 REMARK 465 LYS B 9 REMARK 465 THR B 10 REMARK 465 LYS B 11 REMARK 465 VAL B 12 REMARK 465 LYS B 13 REMARK 465 GLU B 14 REMARK 465 SER B 15 REMARK 465 VAL B 16 REMARK 465 SER B 17 REMARK 465 ARG B 18 REMARK 465 VAL B 19 REMARK 465 GLU B 20 REMARK 465 LYS B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 GLN B 24 REMARK 465 LYS B 25 REMARK 465 MET B 61 REMARK 465 GLN B 62 REMARK 465 PRO B 63 REMARK 465 PRO B 64 REMARK 465 GLY B 65 REMARK 465 GLU B 66 REMARK 465 VAL C 1 REMARK 465 ASP C 2 REMARK 465 SER C 3 REMARK 465 VAL C 4 REMARK 465 GLU C 5 REMARK 465 GLY C 6 REMARK 465 GLU C 7 REMARK 465 GLY C 8 REMARK 465 GLU C 9 REMARK 465 GLU C 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 76 47.77 -103.15 REMARK 500 GLN A 122 147.81 82.10 REMARK 500 SER A 187 64.09 37.25 REMARK 500 MET A 216 -103.31 -147.90 REMARK 500 MET A 292 -75.02 -121.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 6JZD A 1 355 UNP Q8C5G2 VASH2_MOUSE 1 355 DBREF 6JZD B 1 66 UNP Q8N300 SVBP_HUMAN 1 66 DBREF 6JZD C 1 15 PDB 6JZD 6JZD 1 15 SEQADV 6JZD ALA A 158 UNP Q8C5G2 CYS 158 ENGINEERED MUTATION SEQADV 6JZD MET B -21 UNP Q8N300 INITIATING METHIONINE SEQADV 6JZD HIS B -20 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B -19 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B -18 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B -17 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B -16 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B -15 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B -14 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B -13 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B -12 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B -11 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD SER B -10 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD GLY B -9 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD ASP B -8 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD GLU B -7 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD VAL B -6 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD ASP B -5 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD ALA B -4 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD GLY B -3 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD SER B -2 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD GLY B -1 UNP Q8N300 EXPRESSION TAG SEQADV 6JZD HIS B 0 UNP Q8N300 EXPRESSION TAG SEQRES 1 A 355 MET THR GLY SER ALA ALA ASP THR HIS ARG CYS PRO HIS SEQRES 2 A 355 PRO LYS ILE THR LYS GLY THR ARG SER ARG SER SER HIS SEQRES 3 A 355 ALA ARG PRO VAL SER LEU ALA THR SER GLY GLY SER GLU SEQRES 4 A 355 GLU GLU ASP LYS ASP GLY GLY VAL LEU PHE HIS VAL ASN SEQRES 5 A 355 LYS SER GLY PHE PRO ILE ASP SER HIS THR TRP GLU ARG SEQRES 6 A 355 MET TRP LEU HIS VAL ALA LYS VAL HIS PRO ARG GLY GLY SEQRES 7 A 355 GLU MET VAL GLY ALA ILE ARG ASN ALA ALA PHE LEU ALA SEQRES 8 A 355 LYS PRO SER ILE PRO GLN VAL PRO ASN TYR ARG LEU SER SEQRES 9 A 355 MET THR ILE PRO ASP TRP LEU GLN ALA ILE GLN ASN TYR SEQRES 10 A 355 MET LYS THR LEU GLN TYR ASN HIS THR GLY THR GLN PHE SEQRES 11 A 355 PHE GLU ILE ARG LYS MET ARG PRO LEU SER GLY LEU MET SEQRES 12 A 355 GLU THR ALA LYS GLU MET THR ARG GLU SER LEU PRO ILE SEQRES 13 A 355 LYS ALA LEU GLU ALA VAL ILE LEU GLY ILE TYR LEU THR SEQRES 14 A 355 ASN GLY GLN PRO SER ILE GLU ARG PHE PRO ILE SER PHE SEQRES 15 A 355 LYS THR TYR PHE SER GLY ASN TYR PHE HIS HIS VAL VAL SEQRES 16 A 355 LEU GLY ILE TYR CYS ASN GLY TYR TYR GLY SER LEU GLY SEQRES 17 A 355 MET SER ARG ARG ALA GLU LEU MET ASP LYS PRO LEU THR SEQRES 18 A 355 PHE ARG THR LEU SER ASP LEU VAL PHE ASP PHE GLU ASP SEQRES 19 A 355 SER TYR LYS LYS TYR LEU HIS THR VAL LYS LYS VAL LYS SEQRES 20 A 355 ILE GLY LEU TYR VAL PRO HIS GLU PRO HIS SER PHE GLN SEQRES 21 A 355 PRO ILE GLU TRP LYS GLN LEU VAL LEU ASN VAL SER LYS SEQRES 22 A 355 MET LEU ARG ALA ASP ILE ARG LYS GLU LEU GLU LYS TYR SEQRES 23 A 355 ALA ARG ASP MET ARG MET LYS ILE LEU LYS PRO ALA SER SEQRES 24 A 355 ALA HIS SER PRO THR GLN VAL ARG SER ARG GLY LYS SER SEQRES 25 A 355 LEU SER PRO ARG ARG ARG GLN ALA SER PRO PRO ARG ARG SEQRES 26 A 355 LEU GLY ARG ARG ASP LYS SER PRO ALA LEU THR GLU LYS SEQRES 27 A 355 LYS VAL ALA ASP LEU GLY THR LEU ASN GLU VAL GLY TYR SEQRES 28 A 355 GLN ILE ARG ILE SEQRES 1 B 88 MET HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER GLY SEQRES 2 B 88 ASP GLU VAL ASP ALA GLY SER GLY HIS MET ASP PRO PRO SEQRES 3 B 88 ALA ARG LYS GLU LYS THR LYS VAL LYS GLU SER VAL SER SEQRES 4 B 88 ARG VAL GLU LYS ALA LYS GLN LYS SER ALA GLN GLN GLU SEQRES 5 B 88 LEU LYS GLN ARG GLN ARG ALA GLU ILE TYR ALA LEU ASN SEQRES 6 B 88 ARG VAL MET THR GLU LEU GLU GLN GLN GLN PHE ASP GLU SEQRES 7 B 88 PHE CYS LYS GLN MET GLN PRO PRO GLY GLU SEQRES 1 C 15 VAL ASP SER VAL GLU GLY GLU GLY GLU GLU GLU GLY GLU SEQRES 2 C 15 GLU TYR FORMUL 4 HOH *16(H2 O) HELIX 1 AA1 ASP A 59 HIS A 74 1 16 HELIX 2 AA2 ARG A 76 ASN A 86 1 11 HELIX 3 AA3 THR A 106 GLN A 122 1 17 HELIX 4 AA4 PRO A 138 SER A 153 1 16 HELIX 5 AA5 LYS A 157 ASN A 170 1 14 HELIX 6 AA6 ARG A 212 MET A 216 5 5 HELIX 7 AA7 THR A 224 TYR A 239 1 16 HELIX 8 AA8 ASN A 270 MET A 274 5 5 HELIX 9 AA9 LEU A 275 MET A 292 1 18 HELIX 10 AB1 ALA B 27 GLN B 60 1 34 SHEET 1 AA1 2 HIS A 50 VAL A 51 0 SHEET 2 AA1 2 THR A 128 GLN A 129 1 O GLN A 129 N HIS A 50 SHEET 1 AA2 6 LYS A 218 PHE A 222 0 SHEET 2 AA2 6 TYR A 203 LEU A 207 -1 N SER A 206 O LYS A 218 SHEET 3 AA2 6 ASN A 189 CYS A 200 -1 N LEU A 196 O LEU A 207 SHEET 4 AA2 6 GLU A 176 PHE A 186 -1 N PHE A 182 O HIS A 193 SHEET 5 AA2 6 THR A 242 ILE A 248 -1 O LYS A 247 N SER A 181 SHEET 6 AA2 6 LEU A 267 LEU A 269 -1 O LEU A 269 N VAL A 246 CISPEP 1 PHE A 56 PRO A 57 0 6.35 CRYST1 74.004 111.339 126.317 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008982 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007917 0.00000