HEADER OXIDOREDUCTASE/LYASE 04-MAY-19 6JZY TITLE CRYSTAL STRUCTURE OF AAR WITH NADPH AND STEARYL IN COMPLEX WITH ADO TITLE 2 BINDING A LONG CHAIN CARBOHYDRATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LONG-CHAIN ACYL-[ACYL-CARRIER-PROTEIN] REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACYL-ACP REDUCTASE; COMPND 5 EC: 1.2.1.80; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ALDEHYDE DECARBONYLASE; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: AD,FATTY ALDEHYDE DECARBONYLASE; COMPND 11 EC: 4.1.99.5; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS PCC 7942; SOURCE 3 ORGANISM_TAXID: 1140; SOURCE 4 GENE: SYNPCC7942_1594, SEC0028; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS PCC 7942; SOURCE 11 ORGANISM_TAXID: 1140; SOURCE 12 GENE: SEC0027; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASIMID KEYWDS REDUCTASE, ALKANE, ALDEHYDE, OXYGENASE, OXIDOREDUCTASE-LYASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.M.ZHANG,M.LI,Y.GAO REVDAT 4 09-OCT-24 6JZY 1 REMARK REVDAT 3 22-NOV-23 6JZY 1 LINK REVDAT 2 22-APR-20 6JZY 1 JRNL REVDAT 1 01-APR-20 6JZY 0 JRNL AUTH Y.GAO,H.ZHANG,M.FAN,C.JIA,L.SHI,X.PAN,P.CAO,X.ZHAO,W.CHANG, JRNL AUTH 2 M.LI JRNL TITL STRUCTURAL INSIGHTS INTO CATALYTIC MECHANISM AND PRODUCT JRNL TITL 2 DELIVERY OF CYANOBACTERIAL ACYL-ACYL CARRIER PROTEIN JRNL TITL 3 REDUCTASE. JRNL REF NAT COMMUN V. 11 1525 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32251275 JRNL DOI 10.1038/S41467-020-15268-Y REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 37568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.340 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1436 - 5.0577 1.00 2734 156 0.1655 0.1911 REMARK 3 2 5.0577 - 4.0150 1.00 2630 150 0.1591 0.1977 REMARK 3 3 4.0150 - 3.5077 1.00 2602 147 0.1859 0.2264 REMARK 3 4 3.5077 - 3.1870 1.00 2581 136 0.2127 0.2396 REMARK 3 5 3.1870 - 2.9586 1.00 2539 143 0.2286 0.2934 REMARK 3 6 2.9586 - 2.7842 1.00 2573 135 0.2344 0.2544 REMARK 3 7 2.7842 - 2.6448 1.00 2515 155 0.2256 0.2946 REMARK 3 8 2.6448 - 2.5297 1.00 2528 142 0.2312 0.2908 REMARK 3 9 2.5297 - 2.4323 1.00 2527 142 0.2278 0.2945 REMARK 3 10 2.4323 - 2.3483 0.99 2525 153 0.2210 0.2693 REMARK 3 11 2.3483 - 2.2749 0.99 2515 140 0.2313 0.2878 REMARK 3 12 2.2749 - 2.2099 1.00 2533 123 0.2456 0.3285 REMARK 3 13 2.2099 - 2.1517 1.00 2504 151 0.2581 0.2972 REMARK 3 14 2.1517 - 2.0992 0.90 2255 134 0.2784 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.040 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4529 REMARK 3 ANGLE : 0.990 6134 REMARK 3 CHIRALITY : 0.054 677 REMARK 3 PLANARITY : 0.005 797 REMARK 3 DIHEDRAL : 7.078 3671 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6JZY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 32.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4RC8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH 7.5, 20% PEG 8000, REMARK 280 EVAPORATION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.80450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.83850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.62400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.83850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.80450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.62400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 343 REMARK 465 LEU A 344 REMARK 465 TYR A 345 REMARK 465 PHE A 346 REMARK 465 GLN A 347 REMARK 465 MET B -22 REMARK 465 ARG B -21 REMARK 465 THR B -20 REMARK 465 PRO B -19 REMARK 465 TRP B -18 REMARK 465 ASP B -17 REMARK 465 PRO B -16 REMARK 465 PRO B -15 REMARK 465 ASN B -14 REMARK 465 PRO B -13 REMARK 465 THR B -12 REMARK 465 PHE B -11 REMARK 465 SER B -10 REMARK 465 LEU B -9 REMARK 465 SER B -8 REMARK 465 SER B -7 REMARK 465 VAL B -6 REMARK 465 SER B -5 REMARK 465 GLY B -4 REMARK 465 ASP B -3 REMARK 465 ARG B -2 REMARK 465 ARG B -1 REMARK 465 LEU B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 GLN B 3 REMARK 465 LEU B 4 REMARK 465 GLU B 5 REMARK 465 ALA B 6 REMARK 465 SER B 7 REMARK 465 LEU B 8 REMARK 465 GLU B 9 REMARK 465 LEU B 10 REMARK 465 ALA B 229 REMARK 465 ALA B 230 REMARK 465 VAL B 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 19 NE CZ NH1 NH2 REMARK 470 LYS A 254 CD CE NZ REMARK 470 GLU A 342 CG CD OE1 OE2 REMARK 470 PHE B 12 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 SER B 22 OG REMARK 470 ASP B 51 CG OD1 OD2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 ARG B 62 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 PRO B 78 CG CD REMARK 470 GLN B 84 CG CD OE1 NE2 REMARK 470 LYS B 85 CG CD CE NZ REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 GLU B 100 CG CD OE1 OE2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 GLU B 138 CG CD OE1 OE2 REMARK 470 GLU B 194 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 247 O2D NDP A 401 2.09 REMARK 500 NH2 ARG A 314 O3B NDP A 401 2.18 REMARK 500 O2X NDP A 401 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 118 -119.44 55.43 REMARK 500 TRP A 276 177.49 171.00 REMARK 500 GLN A 277 12.19 -142.19 REMARK 500 PHE B 12 108.61 -56.54 REMARK 500 GLN B 13 35.35 -89.01 REMARK 500 GLU B 15 -124.68 70.04 REMARK 500 ASP B 48 12.49 -66.04 REMARK 500 GLN B 49 15.32 -141.56 REMARK 500 SER B 75 49.81 -98.05 REMARK 500 ALA B 99 -6.94 -59.00 REMARK 500 LEU B 112 -69.84 -98.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 32 OE1 REMARK 620 2 GLU B 32 OE2 53.5 REMARK 620 3 GLU B 60 OE2 66.7 116.7 REMARK 620 4 HIS B 63 ND1 100.3 84.9 127.2 REMARK 620 5 GLU B 144 OE1 127.7 75.4 145.7 84.0 REMARK 620 6 GLU B 144 OE2 168.5 124.3 109.9 90.5 49.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 B 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 60 OE1 REMARK 620 2 GLU B 115 OE1 159.5 REMARK 620 3 GLU B 115 OE2 122.1 51.5 REMARK 620 4 GLU B 144 OE2 93.3 87.6 138.4 REMARK 620 5 HIS B 147 ND1 63.8 96.1 94.4 81.7 REMARK 620 6 PL3 B 301 O1 100.8 99.3 94.5 99.7 164.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OCD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PL3 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE2 B 303 DBREF 6JZY A 1 341 UNP Q54765 AAR_SYNE7 1 341 DBREF 6JZY B -22 231 UNP Q8KPT4 Q8KPT4_SYNE7 1 254 SEQADV 6JZY GLU A 342 UNP Q54765 EXPRESSION TAG SEQADV 6JZY ASN A 343 UNP Q54765 EXPRESSION TAG SEQADV 6JZY LEU A 344 UNP Q54765 EXPRESSION TAG SEQADV 6JZY TYR A 345 UNP Q54765 EXPRESSION TAG SEQADV 6JZY PHE A 346 UNP Q54765 EXPRESSION TAG SEQADV 6JZY GLN A 347 UNP Q54765 EXPRESSION TAG SEQRES 1 A 347 MET PHE GLY LEU ILE GLY HIS LEU THR SER LEU GLU GLN SEQRES 2 A 347 ALA ARG ASP VAL SER ARG ARG MET GLY TYR ASP GLU TYR SEQRES 3 A 347 ALA ASP GLN GLY LEU GLU PHE TRP SER SER ALA PRO PRO SEQRES 4 A 347 GLN ILE VAL ASP GLU ILE THR VAL THR SER ALA THR GLY SEQRES 5 A 347 LYS VAL ILE HIS GLY ARG TYR ILE GLU SER CYS PHE LEU SEQRES 6 A 347 PRO GLU MET LEU ALA ALA ARG ARG PHE LYS THR ALA THR SEQRES 7 A 347 ARG LYS VAL LEU ASN ALA MET SER HIS ALA GLN LYS HIS SEQRES 8 A 347 GLY ILE ASP ILE SER ALA LEU GLY GLY PHE THR SER ILE SEQRES 9 A 347 ILE PHE GLU ASN PHE ASP LEU ALA SER LEU ARG GLN VAL SEQRES 10 A 347 ARG ASP THR THR LEU GLU PHE GLU ARG PHE THR THR GLY SEQRES 11 A 347 ASN THR HIS THR ALA TYR VAL ILE CYS ARG GLN VAL GLU SEQRES 12 A 347 ALA ALA ALA LYS THR LEU GLY ILE ASP ILE THR GLN ALA SEQRES 13 A 347 THR VAL ALA VAL VAL GLY ALA THR GLY ASP ILE GLY SER SEQRES 14 A 347 ALA VAL CYS ARG TRP LEU ASP LEU LYS LEU GLY VAL GLY SEQRES 15 A 347 ASP LEU ILE LEU THR ALA ARG ASN GLN GLU ARG LEU ASP SEQRES 16 A 347 ASN LEU GLN ALA GLU LEU GLY ARG GLY LYS ILE LEU PRO SEQRES 17 A 347 LEU GLU ALA ALA LEU PRO GLU ALA ASP PHE ILE VAL TRP SEQRES 18 A 347 VAL ALA SER MET PRO GLN GLY VAL VAL ILE ASP PRO ALA SEQRES 19 A 347 THR LEU LYS GLN PRO CYS VAL LEU ILE ASP GLY GLY TYR SEQRES 20 A 347 PRO LYS ASN LEU GLY SER LYS VAL GLN GLY GLU GLY ILE SEQRES 21 A 347 TYR VAL LEU ASN GLY GLY VAL VAL GLU HIS CYS PHE ASP SEQRES 22 A 347 ILE ASP TRP GLN ILE MET SER ALA ALA GLU MET ALA ARG SEQRES 23 A 347 PRO GLU ARG GLN MET PHE ALA CYS PHE ALA GLU ALA MET SEQRES 24 A 347 LEU LEU GLU PHE GLU GLY TRP HIS THR ASN PHE SER TRP SEQRES 25 A 347 GLY ARG ASN GLN ILE THR ILE GLU LYS MET GLU ALA ILE SEQRES 26 A 347 GLY GLU ALA SER VAL ARG HIS GLY PHE GLN PRO LEU ALA SEQRES 27 A 347 LEU ALA ILE GLU ASN LEU TYR PHE GLN SEQRES 1 B 254 MET ARG THR PRO TRP ASP PRO PRO ASN PRO THR PHE SER SEQRES 2 B 254 LEU SER SER VAL SER GLY ASP ARG ARG LEU MET PRO GLN SEQRES 3 B 254 LEU GLU ALA SER LEU GLU LEU ASP PHE GLN SER GLU SER SEQRES 4 B 254 TYR LYS ASP ALA TYR SER ARG ILE ASN ALA ILE VAL ILE SEQRES 5 B 254 GLU GLY GLU GLN GLU ALA PHE ASP ASN TYR ASN ARG LEU SEQRES 6 B 254 ALA GLU MET LEU PRO ASP GLN ARG ASP GLU LEU HIS LYS SEQRES 7 B 254 LEU ALA LYS MET GLU GLN ARG HIS MET LYS GLY PHE MET SEQRES 8 B 254 ALA CYS GLY LYS ASN LEU SER VAL THR PRO ASP MET GLY SEQRES 9 B 254 PHE ALA GLN LYS PHE PHE GLU ARG LEU HIS GLU ASN PHE SEQRES 10 B 254 LYS ALA ALA ALA ALA GLU GLY LYS VAL VAL THR CYS LEU SEQRES 11 B 254 LEU ILE GLN SER LEU ILE ILE GLU CYS PHE ALA ILE ALA SEQRES 12 B 254 ALA TYR ASN ILE TYR ILE PRO VAL ALA ASP ALA PHE ALA SEQRES 13 B 254 ARG LYS ILE THR GLU GLY VAL VAL ARG ASP GLU TYR LEU SEQRES 14 B 254 HIS ARG ASN PHE GLY GLU GLU TRP LEU LYS ALA ASN PHE SEQRES 15 B 254 ASP ALA SER LYS ALA GLU LEU GLU GLU ALA ASN ARG GLN SEQRES 16 B 254 ASN LEU PRO LEU VAL TRP LEU MET LEU ASN GLU VAL ALA SEQRES 17 B 254 ASP ASP ALA ARG GLU LEU GLY MET GLU ARG GLU SER LEU SEQRES 18 B 254 VAL GLU ASP PHE MET ILE ALA TYR GLY GLU ALA LEU GLU SEQRES 19 B 254 ASN ILE GLY PHE THR THR ARG GLU ILE MET ARG MET SER SEQRES 20 B 254 ALA TYR GLY LEU ALA ALA VAL HET NDP A 401 48 HET OCD A 402 19 HET PL3 B 301 17 HET FE2 B 302 1 HET FE2 B 303 1 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM OCD OCTADECANAL HETNAM PL3 HEXADECAN-1-OL HETNAM FE2 FE (II) ION FORMUL 3 NDP C21 H30 N7 O17 P3 FORMUL 4 OCD C18 H36 O FORMUL 5 PL3 C16 H34 O FORMUL 6 FE2 2(FE 2+) FORMUL 8 HOH *143(H2 O) HELIX 1 AA1 SER A 10 ARG A 20 1 11 HELIX 2 AA2 GLY A 30 SER A 36 1 7 HELIX 3 AA3 LEU A 65 ALA A 71 1 7 HELIX 4 AA4 ARG A 73 HIS A 91 1 19 HELIX 5 AA5 GLY A 100 PHE A 109 1 10 HELIX 6 AA6 ASP A 110 LEU A 114 5 5 HELIX 7 AA7 GLU A 123 GLU A 125 5 3 HELIX 8 AA8 GLY A 130 LEU A 149 1 20 HELIX 9 AA9 ASP A 152 GLN A 155 5 4 HELIX 10 AB1 GLY A 165 LYS A 178 1 14 HELIX 11 AB2 ASN A 190 GLY A 202 1 13 HELIX 12 AB3 PRO A 208 LEU A 213 1 6 HELIX 13 AB4 PRO A 214 ALA A 216 5 3 HELIX 14 AB5 ASP A 232 LEU A 236 5 5 HELIX 15 AB6 GLN A 277 ALA A 282 1 6 HELIX 16 AB7 ALA A 293 GLY A 305 1 13 HELIX 17 AB8 THR A 318 HIS A 332 1 15 HELIX 18 AB9 GLU B 15 LEU B 46 1 32 HELIX 19 AC1 GLN B 49 LEU B 74 1 26 HELIX 20 AC2 ASP B 79 ALA B 99 1 21 HELIX 21 AC3 LYS B 102 LEU B 112 1 11 HELIX 22 AC4 LEU B 112 ILE B 126 1 15 HELIX 23 AC5 PRO B 127 ALA B 129 5 3 HELIX 24 AC6 ASP B 130 ASN B 158 1 29 HELIX 25 AC7 ASN B 158 VAL B 184 1 27 HELIX 26 AC8 VAL B 184 LEU B 191 1 8 HELIX 27 AC9 GLU B 194 GLY B 214 1 21 HELIX 28 AD1 THR B 216 ALA B 225 1 10 SHEET 1 AA1 5 GLN A 40 THR A 48 0 SHEET 2 AA1 5 VAL A 54 GLU A 61 -1 O GLY A 57 N ILE A 45 SHEET 3 AA1 5 PHE A 2 GLY A 6 1 N LEU A 4 O ILE A 60 SHEET 4 AA1 5 ILE A 95 LEU A 98 1 O ILE A 95 N GLY A 3 SHEET 5 AA1 5 PHE A 127 THR A 128 1 O THR A 128 N LEU A 98 SHEET 1 AA2 2 GLN A 116 VAL A 117 0 SHEET 2 AA2 2 THR A 120 THR A 121 -1 O THR A 120 N VAL A 117 SHEET 1 AA3 6 LYS A 205 ILE A 206 0 SHEET 2 AA3 6 ASP A 183 THR A 187 1 N LEU A 186 O LYS A 205 SHEET 3 AA3 6 THR A 157 VAL A 161 1 N VAL A 158 O ILE A 185 SHEET 4 AA3 6 PHE A 218 TRP A 221 1 O VAL A 220 N VAL A 161 SHEET 5 AA3 6 CYS A 240 ASP A 244 1 O ILE A 243 N TRP A 221 SHEET 6 AA3 6 ILE A 260 ASN A 264 1 O TYR A 261 N LEU A 242 SHEET 1 AA4 3 GLN A 290 PHE A 292 0 SHEET 2 AA4 3 VAL A 267 HIS A 270 -1 N VAL A 268 O MET A 291 SHEET 3 AA4 3 PHE A 334 PRO A 336 -1 O GLN A 335 N GLU A 269 LINK SG CYS A 294 C1 OCD A 402 1555 1555 1.77 LINK OE1 GLU B 32 FE FE2 B 302 1555 1555 2.42 LINK OE2 GLU B 32 FE FE2 B 302 1555 1555 2.33 LINK OE2 GLU B 60 FE FE2 B 302 1555 1555 2.51 LINK OE1 GLU B 60 FE FE2 B 303 1555 1555 2.62 LINK ND1 HIS B 63 FE FE2 B 302 1555 1555 2.67 LINK OE1 GLU B 115 FE FE2 B 303 1555 1555 2.52 LINK OE2 GLU B 115 FE FE2 B 303 1555 1555 2.54 LINK OE1 GLU B 144 FE FE2 B 302 1555 1555 2.56 LINK OE2 GLU B 144 FE FE2 B 302 1555 1555 2.70 LINK OE2 GLU B 144 FE FE2 B 303 1555 1555 2.40 LINK ND1 HIS B 147 FE FE2 B 303 1555 1555 2.75 LINK O1 PL3 B 301 FE FE2 B 303 1555 1555 2.36 CISPEP 1 GLN A 238 PRO A 239 0 -1.12 CISPEP 2 TYR A 247 PRO A 248 0 1.01 SITE 1 AC1 34 PHE A 101 ILE A 104 ASN A 131 THR A 134 SITE 2 AC1 34 GLY A 162 THR A 164 GLY A 165 ASP A 166 SITE 3 AC1 34 ILE A 167 ALA A 188 ARG A 189 ASN A 190 SITE 4 AC1 34 ARG A 193 VAL A 222 ALA A 223 SER A 224 SITE 5 AC1 34 MET A 225 GLY A 245 GLY A 246 TYR A 247 SITE 6 AC1 34 GLY A 265 GLY A 266 PHE A 292 ALA A 293 SITE 7 AC1 34 CYS A 294 ARG A 314 OCD A 402 HOH A 501 SITE 8 AC1 34 HOH A 510 HOH A 518 HOH A 519 HOH A 552 SITE 9 AC1 34 HOH A 568 HOH A 606 SITE 1 AC2 15 GLY A 6 HIS A 7 LEU A 8 VAL A 17 SITE 2 AC2 15 TYR A 59 GLU A 61 GLY A 99 GLY A 100 SITE 3 AC2 15 TYR A 247 ILE A 278 ALA A 281 CYS A 294 SITE 4 AC2 15 PHE A 295 NDP A 401 HOH A 505 SITE 1 AC3 17 ILE B 24 ILE B 27 VAL B 28 GLY B 31 SITE 2 AC3 17 GLU B 32 ALA B 35 GLU B 60 ILE B 114 SITE 3 AC3 17 GLU B 115 PHE B 117 ALA B 118 ALA B 121 SITE 4 AC3 17 TYR B 125 GLU B 144 MET B 193 FE2 B 302 SITE 5 AC3 17 FE2 B 303 SITE 1 AC4 6 GLU B 32 GLU B 60 HIS B 63 GLU B 144 SITE 2 AC4 6 PL3 B 301 FE2 B 303 SITE 1 AC5 6 GLU B 60 GLU B 115 GLU B 144 HIS B 147 SITE 2 AC5 6 PL3 B 301 FE2 B 302 CRYST1 65.609 71.248 135.677 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015242 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014035 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007370 0.00000