HEADER OXIDOREDUCTASE 06-MAY-19 6K0F TITLE THE CRYSTAL STRUCTURE OF CYCLOPENIN-BOUND ASQJ QUINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRON/ALPHA-KETOGLUTARATE-DEPENDENT DIOXYGENASE ASQJ; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: 4'-METHOXYVIRIDICATIN/ASPOQUINOLONE BIOSYNTHESIS CLUSTER COMPND 5 PROTEIN ASQJ,ASPOQUINOLONE BIOSYNTHESIS PROTEIN J; COMPND 6 EC: 1.14.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: EMERICELLA NIDULANS (STRAIN FGSC A4 / ATCC SOURCE 3 38163 / CBS 112.46 / NRRL 194 / M139); SOURCE 4 ORGANISM_TAXID: 227321; SOURCE 5 STRAIN: FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139; SOURCE 6 GENE: ASQJ, AN9227; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLOPENIN, DIOXYGEN, PRODUCT, 2OG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.J.LIAO,N.L.CHAN REVDAT 2 22-NOV-23 6K0F 1 LINK REVDAT 1 18-MAR-20 6K0F 0 JRNL AUTH H.J.LIAO,N.L.CHAN JRNL TITL THE CRYSTAL STRUCTURE OF CYCLOPENIN-BOUND ASQJ QUINARY JRNL TITL 2 COMPLEX JRNL REF J.AM.CHEM.SOC. 2020 JRNL REFN ESSN 1520-5126 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 37228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2110 - 3.8388 0.98 2829 165 0.1472 0.1593 REMARK 3 2 3.8388 - 3.0480 0.99 2760 147 0.1744 0.2016 REMARK 3 3 3.0480 - 2.6630 1.00 2780 111 0.1948 0.2084 REMARK 3 4 2.6630 - 2.4196 1.00 2746 128 0.1889 0.2251 REMARK 3 5 2.4196 - 2.2463 1.00 2710 168 0.1805 0.1881 REMARK 3 6 2.2463 - 2.1139 1.00 2726 129 0.1743 0.2033 REMARK 3 7 2.1139 - 2.0080 1.00 2681 155 0.1803 0.1999 REMARK 3 8 2.0080 - 1.9207 1.00 2709 145 0.1767 0.2125 REMARK 3 9 1.9207 - 1.8467 1.00 2696 149 0.1900 0.2179 REMARK 3 10 1.8467 - 1.7830 1.00 2709 132 0.1923 0.2090 REMARK 3 11 1.7830 - 1.7273 1.00 2706 126 0.1965 0.2142 REMARK 3 12 1.7273 - 1.6779 1.00 2677 157 0.2037 0.2342 REMARK 3 13 1.6779 - 1.6340 0.97 2636 151 0.2250 0.2669 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2311 REMARK 3 ANGLE : 1.073 3158 REMARK 3 CHIRALITY : 0.072 371 REMARK 3 PLANARITY : 0.009 404 REMARK 3 DIHEDRAL : 8.539 1900 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5550 -27.7149 -19.7780 REMARK 3 T TENSOR REMARK 3 T11: 0.2150 T22: 0.3097 REMARK 3 T33: 0.2449 T12: 0.1060 REMARK 3 T13: 0.0663 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 4.4174 L22: 4.7932 REMARK 3 L33: 2.1292 L12: -0.4992 REMARK 3 L13: 1.3419 L23: 1.5570 REMARK 3 S TENSOR REMARK 3 S11: -0.0535 S12: 0.2145 S13: -0.1557 REMARK 3 S21: -0.2538 S22: 0.1053 S23: -0.4614 REMARK 3 S31: 0.2902 S32: 0.4505 S33: -0.0395 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 41 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8085 -5.1063 -8.3449 REMARK 3 T TENSOR REMARK 3 T11: 0.2335 T22: 0.2606 REMARK 3 T33: 0.3647 T12: -0.0855 REMARK 3 T13: -0.0857 T23: -0.0173 REMARK 3 L TENSOR REMARK 3 L11: 7.3631 L22: 4.7502 REMARK 3 L33: 8.5353 L12: -1.9939 REMARK 3 L13: -6.6085 L23: 2.5812 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.2867 S13: 0.6675 REMARK 3 S21: -0.0460 S22: 0.2151 S23: -0.4291 REMARK 3 S31: -0.6972 S32: 0.7734 S33: -0.2299 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.7379 -17.0967 -9.3561 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.1294 REMARK 3 T33: 0.1522 T12: 0.0291 REMARK 3 T13: -0.0026 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.8480 L22: 1.4448 REMARK 3 L33: 1.4170 L12: 0.3982 REMARK 3 L13: 0.6670 L23: 0.0369 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.1371 S13: 0.0918 REMARK 3 S21: 0.1320 S22: -0.0110 S23: -0.1211 REMARK 3 S31: -0.0226 S32: 0.1142 S33: 0.0195 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 147 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8829 -27.6527 -16.1498 REMARK 3 T TENSOR REMARK 3 T11: 0.2149 T22: 0.1326 REMARK 3 T33: 0.1960 T12: 0.0583 REMARK 3 T13: 0.0157 T23: 0.0266 REMARK 3 L TENSOR REMARK 3 L11: 5.8118 L22: 0.3518 REMARK 3 L33: 1.4350 L12: -0.5446 REMARK 3 L13: -0.5113 L23: -0.5979 REMARK 3 S TENSOR REMARK 3 S11: -0.0065 S12: -0.0842 S13: -0.5638 REMARK 3 S21: -0.0579 S22: -0.0223 S23: -0.1008 REMARK 3 S31: 0.2311 S32: 0.0649 S33: 0.0152 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2862 -32.4974 -5.4960 REMARK 3 T TENSOR REMARK 3 T11: 0.2442 T22: 0.2065 REMARK 3 T33: 0.2557 T12: 0.1037 REMARK 3 T13: -0.0126 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 1.9964 L22: 3.0979 REMARK 3 L33: 4.2728 L12: -1.8009 REMARK 3 L13: 0.9986 L23: -1.5743 REMARK 3 S TENSOR REMARK 3 S11: 0.2102 S12: -0.1938 S13: -0.4647 REMARK 3 S21: 0.2815 S22: -0.0135 S23: -0.2315 REMARK 3 S31: 0.6798 S32: 0.0758 S33: -0.1986 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6918 -22.7408 -7.0371 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.2140 REMARK 3 T33: 0.2178 T12: 0.0567 REMARK 3 T13: -0.0149 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.3440 L22: 2.0541 REMARK 3 L33: 1.3593 L12: 0.1707 REMARK 3 L13: 0.4700 L23: 0.0655 REMARK 3 S TENSOR REMARK 3 S11: -0.0228 S12: -0.0745 S13: -0.1014 REMARK 3 S21: 0.1676 S22: 0.0642 S23: -0.4745 REMARK 3 S31: 0.1266 S32: 0.3140 S33: -0.0507 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 233 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9732 -7.2895 -19.0710 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: 0.1083 REMARK 3 T33: 0.2114 T12: 0.0085 REMARK 3 T13: -0.0344 T23: 0.0291 REMARK 3 L TENSOR REMARK 3 L11: 2.0249 L22: 2.3797 REMARK 3 L33: 3.7598 L12: 1.0867 REMARK 3 L13: -0.8332 L23: -0.3479 REMARK 3 S TENSOR REMARK 3 S11: -0.0445 S12: 0.0634 S13: 0.4374 REMARK 3 S21: -0.0959 S22: 0.0202 S23: 0.0026 REMARK 3 S31: -0.3625 S32: 0.1500 S33: 0.0094 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 260 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.5603 -14.3479 -27.6070 REMARK 3 T TENSOR REMARK 3 T11: 0.1761 T22: 0.1406 REMARK 3 T33: 0.1095 T12: 0.0017 REMARK 3 T13: 0.0158 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 6.0527 L22: 2.2632 REMARK 3 L33: 3.6821 L12: 0.4851 REMARK 3 L13: 1.8804 L23: -0.3042 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: 0.4871 S13: 0.0823 REMARK 3 S21: -0.2792 S22: 0.0055 S23: 0.0689 REMARK 3 S31: 0.0645 S32: -0.0168 S33: 0.0450 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 280 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.9953 -0.8458 -27.8437 REMARK 3 T TENSOR REMARK 3 T11: 0.3582 T22: 0.2935 REMARK 3 T33: 0.4340 T12: -0.0679 REMARK 3 T13: -0.0496 T23: 0.1665 REMARK 3 L TENSOR REMARK 3 L11: 3.8474 L22: 5.9668 REMARK 3 L33: 2.6751 L12: 2.0888 REMARK 3 L13: 0.1863 L23: -0.3873 REMARK 3 S TENSOR REMARK 3 S11: -0.4636 S12: 0.5995 S13: 1.6979 REMARK 3 S21: -0.1491 S22: 0.2545 S23: 0.6308 REMARK 3 S31: -0.5991 S32: 0.2976 S33: 0.1478 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012064. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37248 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5Y7R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, IMIDAZOLE, CALCIUM ACETATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.36100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.36100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.91950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.47150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.91950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.47150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.36100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.91950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 60.47150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.36100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.91950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 60.47150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 587 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 644 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 696 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 720 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 724 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 726 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 LYS B 4 REMARK 465 ASP B 5 REMARK 465 HIS B 6 REMARK 465 VAL B 7 REMARK 465 HIS B 296 REMARK 465 ASP B 297 REMARK 465 ASP B 298 REMARK 465 GLU B 299 REMARK 465 ALA B 300 REMARK 465 GLU B 301 REMARK 465 PRO B 302 REMARK 465 LEU B 303 REMARK 465 CYS B 304 REMARK 465 ARG B 305 REMARK 465 GLU B 306 REMARK 465 THR B 307 REMARK 465 ILE B 308 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 239 CD GLU B 239 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 150 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 81 -169.43 -113.43 REMARK 500 GLU B 92 -67.20 -99.73 REMARK 500 MET B 137 -5.22 84.13 REMARK 500 SER B 140 -43.78 -135.10 REMARK 500 THR B 220 -53.10 -120.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 726 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B 401 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 134 NE2 REMARK 620 2 ASP B 136 OD1 91.8 REMARK 620 3 HIS B 211 NE2 90.2 91.8 REMARK 620 4 AKG B 402 O5 101.4 166.8 88.9 REMARK 620 5 AKG B 402 O1 96.8 106.3 160.3 71.7 REMARK 620 6 PEO B 404 O1 179.4 87.7 89.4 79.1 83.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CQ9 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEO B 404 DBREF 6K0F B 1 308 UNP Q5AR53 ASQJ_EMENI 109 416 SEQADV 6K0F MET B -18 UNP Q5AR53 INITIATING METHIONINE SEQADV 6K0F GLY B -17 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F SER B -16 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F SER B -15 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F HIS B -14 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F HIS B -13 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F HIS B -12 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F HIS B -11 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F HIS B -10 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F HIS B -9 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F SER B -8 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F GLY B -7 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F LEU B -6 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F VAL B -5 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F PRO B -4 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F ARG B -3 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F GLY B -2 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F SER B -1 UNP Q5AR53 EXPRESSION TAG SEQADV 6K0F HIS B 0 UNP Q5AR53 EXPRESSION TAG SEQRES 1 B 327 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLY LEU SEQRES 2 B 327 VAL PRO ARG GLY SER HIS MET THR SER LYS ASP HIS VAL SEQRES 3 B 327 LYS SER GLN ILE PRO ARG LEU SER ALA ILE ASN ASP LEU SEQRES 4 B 327 HIS LYS ILE TRP PRO THR VAL GLU GLU HIS GLY ALA ALA SEQRES 5 B 327 ILE ILE GLU SER PHE LEU SER LEU ASP ILE VAL ARG ARG SEQRES 6 B 327 LEU ASN GLU GLU VAL ASP PRO PHE VAL LYS ILE GLU PRO SEQRES 7 B 327 ILE PRO ALA ALA LYS THR LYS ASP HIS PRO ASN HIS VAL SEQRES 8 B 327 LEU SER THR THR THR ARG LEU VAL ASN VAL LEU ALA PRO SEQRES 9 B 327 ILE SER LYS ALA TYR ARG GLU ASP VAL LEU ASN SER LYS SEQRES 10 B 327 VAL LEU HIS ARG ILE CYS SER ASP ALA PHE HIS VAL TYR SEQRES 11 B 327 GLY ASP TYR TRP VAL LEU MET GLY ALA VAL MET GLU LEU SEQRES 12 B 327 ALA PRO SER ASN PRO ALA GLN PRO LEU HIS ARG ASP MET SEQRES 13 B 327 ARG PHE SER HIS PRO ILE VAL GLU TYR LEU LYS PRO ASP SEQRES 14 B 327 ALA PRO ALA THR SER ILE ASN PHE LEU VAL ALA LEU SER SEQRES 15 B 327 PRO PHE THR ALA GLU ASN GLY ALA THR HIS VAL ILE LEU SEQRES 16 B 327 GLY SER HIS LYS TRP GLN ASN LEU SER ASN VAL SER MET SEQRES 17 B 327 ASP ALA THR VAL ARG ALA LEU MET ASN PRO GLY ASP ALA SEQRES 18 B 327 LEU LEU ILE THR ASP SER THR ILE HIS CYS GLY GLY ALA SEQRES 19 B 327 GLU THR THR GLY THR GLU THR ARG ARG LEU LEU THR ILE SEQRES 20 B 327 THR MET GLY ILE SER GLN LEU THR PRO LEU GLU SER ASN SEQRES 21 B 327 LEU ALA VAL PRO ARG PRO VAL ILE GLU SER LEU THR PRO SEQRES 22 B 327 LEU ALA GLN ARG LEU LEU GLY TRP ALA SER GLN ARG SER SEQRES 23 B 327 ALA ALA PRO ARG ASP ILE GLY LEU LEU THR ILE ARG GLY SEQRES 24 B 327 ASN SER ILE GLU LYS THR MET ASN LEU LYS ALA GLU GLN SEQRES 25 B 327 PRO LEU HIS ASP ASP GLU ALA GLU PRO LEU CYS ARG GLU SEQRES 26 B 327 THR ILE HET FE B 401 1 HET AKG B 402 14 HET CQ9 B 403 36 HET PEO B 404 4 HETNAM FE FE (III) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM CQ9 (3~{R},3'~{S})-4-METHYL-3'-PHENYL-SPIRO[1~{H}-1,4- HETNAM 2 CQ9 BENZODIAZEPINE-3,2'-OXIRANE]-2,5-DIONE HETNAM PEO HYDROGEN PEROXIDE FORMUL 2 FE FE 3+ FORMUL 3 AKG C5 H6 O5 FORMUL 4 CQ9 C17 H14 N2 O3 FORMUL 5 PEO H2 O2 FORMUL 6 HOH *226(H2 O) HELIX 1 AA1 ASP B 19 HIS B 21 5 3 HELIX 2 AA2 LYS B 22 GLY B 31 1 10 HELIX 3 AA3 SER B 40 GLU B 58 1 19 HELIX 4 AA4 SER B 87 ASP B 93 1 7 HELIX 5 AA5 SER B 97 HIS B 109 1 13 HELIX 6 AA6 HIS B 141 LEU B 147 5 7 HELIX 7 AA7 GLY B 177 TRP B 181 5 5 HELIX 8 AA8 SER B 188 THR B 192 5 5 HELIX 9 AA9 PRO B 245 SER B 251 1 7 HELIX 10 AB1 THR B 253 LEU B 260 1 8 HELIX 11 AB2 SER B 282 ASN B 288 1 7 SHEET 1 AA1 7 ARG B 13 SER B 15 0 SHEET 2 AA1 7 ALA B 32 GLU B 36 1 O ILE B 34 N LEU B 14 SHEET 3 AA1 7 ALA B 202 THR B 206 -1 O ALA B 202 N ILE B 35 SHEET 4 AA1 7 SER B 155 ALA B 161 -1 N LEU B 159 O LEU B 203 SHEET 5 AA1 7 ARG B 223 ILE B 232 -1 O LEU B 226 N VAL B 160 SHEET 6 AA1 7 TYR B 114 LEU B 124 -1 N MET B 118 O THR B 229 SHEET 7 AA1 7 THR B 77 VAL B 80 -1 N VAL B 80 O VAL B 121 SHEET 1 AA2 3 VAL B 193 ARG B 194 0 SHEET 2 AA2 3 HIS B 173 VAL B 174 -1 N VAL B 174 O VAL B 193 SHEET 3 AA2 3 HIS B 211 CYS B 212 -1 O CYS B 212 N HIS B 173 LINK NE2 HIS B 134 FE FE B 401 1555 1555 2.23 LINK OD1 ASP B 136 FE FE B 401 1555 1555 2.27 LINK NE2 HIS B 211 FE FE B 401 1555 1555 2.21 LINK FE FE B 401 O5 AKG B 402 1555 1555 2.42 LINK FE FE B 401 O1 AKG B 402 1555 1555 2.22 LINK FE FE B 401 O1 PEO B 404 1555 1555 2.35 SITE 1 AC1 5 HIS B 134 ASP B 136 HIS B 211 AKG B 402 SITE 2 AC1 5 PEO B 404 SITE 1 AC2 12 MET B 122 GLN B 131 HIS B 134 ASP B 136 SITE 2 AC2 12 THR B 172 HIS B 211 GLY B 213 ARG B 223 SITE 3 AC2 12 FE B 401 CQ9 B 403 PEO B 404 HOH B 556 SITE 1 AC3 15 ASN B 70 VAL B 72 MET B 118 GLN B 131 SITE 2 AC3 15 HIS B 134 ASP B 136 MET B 137 PHE B 139 SITE 3 AC3 15 THR B 227 AKG B 402 PEO B 404 HOH B 509 SITE 4 AC3 15 HOH B 608 HOH B 638 HOH B 664 SITE 1 AC4 6 ASP B 136 ASN B 157 HIS B 211 FE B 401 SITE 2 AC4 6 AKG B 402 CQ9 B 403 CRYST1 73.839 120.943 66.722 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013543 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008268 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014988 0.00000