HEADER SIGNALING PROTEIN 11-MAY-19 6K1Q
TITLE HUMAN ENDOTHELIN RECEPTOR TYPE-B IN COMPLEX WITH INVERSE AGONIST
TITLE 2 IRL2500
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ENDOTHELIN B RECEPTOR,ENDOLYSIN,ENDOTHELIN B RECEPTOR;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ET-BR,ENDOTHELIN RECEPTOR NON-SELECTIVE TYPE,LYSIS PROTEIN,
COMPND 5 LYSOZYME,MURAMIDASE,ET-BR,ENDOTHELIN RECEPTOR NON-SELECTIVE TYPE;
COMPND 6 EC: 3.2.1.17;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606, 10665;
SOURCE 5 GENE: EDNRB, ETRB;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PFASTBAC
KEYWDS ALPHA HELICAL, SIGNALING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR C.NAGIRI,W.SHIHOYA,O.NUREKI
REVDAT 2 23-OCT-24 6K1Q 1 REMARK
REVDAT 1 17-JUL-19 6K1Q 0
JRNL AUTH C.NAGIRI,W.SHIHOYA,A.INOUE,F.M.N.KADJI,J.AOKI,O.NUREKI
JRNL TITL CRYSTAL STRUCTURE OF HUMAN ENDOTHELIN ETBRECEPTOR IN COMPLEX
JRNL TITL 2 WITH PEPTIDE INVERSE AGONIST IRL2500.
JRNL REF COMMUN BIOL V. 2 236 2019
JRNL REFN ESSN 2399-3642
JRNL PMID 31263780
JRNL DOI 10.1038/S42003-019-0482-7
REMARK 2
REMARK 2 RESOLUTION. 2.70 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.14_3260
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.47
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7
REMARK 3 NUMBER OF REFLECTIONS : 25008
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.224
REMARK 3 R VALUE (WORKING SET) : 0.222
REMARK 3 FREE R VALUE : 0.265
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1251
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 48.4772 - 5.6138 1.00 2824 147 0.2224 0.2834
REMARK 3 2 5.6138 - 4.4569 1.00 2681 142 0.2022 0.2229
REMARK 3 3 4.4569 - 3.8938 1.00 2653 139 0.1937 0.2129
REMARK 3 4 3.8938 - 3.5379 1.00 2620 139 0.1964 0.2533
REMARK 3 5 3.5379 - 3.2844 1.00 2623 138 0.2349 0.2980
REMARK 3 6 3.2844 - 3.0908 1.00 2619 138 0.2414 0.2968
REMARK 3 7 3.0908 - 2.9360 1.00 2579 136 0.2649 0.3294
REMARK 3 8 2.9360 - 2.8082 0.99 2576 136 0.2893 0.3388
REMARK 3 9 2.8082 - 2.7001 0.99 2582 136 0.3255 0.3526
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.360
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 70.14
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.77
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 203 )
REMARK 3 ORIGIN FOR THE GROUP (A): 39.8155 41.9249 31.9392
REMARK 3 T TENSOR
REMARK 3 T11: 0.3813 T22: 0.3953
REMARK 3 T33: 0.5151 T12: -0.1236
REMARK 3 T13: 0.0144 T23: -0.0308
REMARK 3 L TENSOR
REMARK 3 L11: 2.5150 L22: 4.0288
REMARK 3 L33: 3.4160 L12: -0.9008
REMARK 3 L13: 0.1077 L23: -1.1018
REMARK 3 S TENSOR
REMARK 3 S11: 0.0327 S12: -0.1504 S13: 0.0281
REMARK 3 S21: -0.0979 S22: -0.2618 S23: -0.0870
REMARK 3 S31: 0.2647 S32: 0.0112 S33: 0.1998
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 204 THROUGH 247 )
REMARK 3 ORIGIN FOR THE GROUP (A): 48.9781 32.2077 28.7928
REMARK 3 T TENSOR
REMARK 3 T11: 0.4155 T22: 0.3416
REMARK 3 T33: 0.4355 T12: -0.0617
REMARK 3 T13: 0.0670 T23: 0.0057
REMARK 3 L TENSOR
REMARK 3 L11: 2.8307 L22: 1.3356
REMARK 3 L33: 0.6422 L12: -0.9310
REMARK 3 L13: 1.0909 L23: -0.1238
REMARK 3 S TENSOR
REMARK 3 S11: 0.1414 S12: -0.3404 S13: -0.2632
REMARK 3 S21: -0.0656 S22: 0.1238 S23: 0.1693
REMARK 3 S31: 0.6095 S32: -0.1026 S33: -0.1156
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 248 THROUGH 312 )
REMARK 3 ORIGIN FOR THE GROUP (A): 38.8219 25.9253 31.2921
REMARK 3 T TENSOR
REMARK 3 T11: 0.8711 T22: 0.5713
REMARK 3 T33: 0.5910 T12: -0.2188
REMARK 3 T13: -0.0023 T23: -0.0031
REMARK 3 L TENSOR
REMARK 3 L11: 0.9463 L22: 0.5670
REMARK 3 L33: 2.2105 L12: -0.4818
REMARK 3 L13: -0.5102 L23: -0.1861
REMARK 3 S TENSOR
REMARK 3 S11: -0.0592 S12: -0.2566 S13: -0.2530
REMARK 3 S21: 0.0421 S22: -0.2431 S23: 0.1256
REMARK 3 S31: 0.7212 S32: 0.1786 S33: 0.2817
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 403 )
REMARK 3 ORIGIN FOR THE GROUP (A): 19.4439 14.0336 65.1505
REMARK 3 T TENSOR
REMARK 3 T11: 0.9038 T22: 0.9914
REMARK 3 T33: 0.8099 T12: -0.1603
REMARK 3 T13: 0.0948 T23: 0.0900
REMARK 3 L TENSOR
REMARK 3 L11: 3.4486 L22: 5.2776
REMARK 3 L33: 5.5651 L12: 1.5103
REMARK 3 L13: 2.5568 L23: 1.2442
REMARK 3 S TENSOR
REMARK 3 S11: -0.0415 S12: -0.8565 S13: -0.2758
REMARK 3 S21: -0.1089 S22: -0.6047 S23: 0.6505
REMARK 3 S31: 0.5911 S32: -0.8476 S33: 0.5342
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: NULL
REMARK 3 ORIGIN FOR THE GROUP (A): 32.4449 29.9822 39.2598
REMARK 3 T TENSOR
REMARK 3 T11: 0.6211 T22: 0.5464
REMARK 3 T33: 0.6117 T12: -0.1692
REMARK 3 T13: 0.0680 T23: 0.0141
REMARK 3 L TENSOR
REMARK 3 L11: 2.7217 L22: 3.2779
REMARK 3 L33: 2.0741 L12: -0.1011
REMARK 3 L13: 0.3288 L23: -1.7070
REMARK 3 S TENSOR
REMARK 3 S11: 0.0447 S12: -0.5075 S13: -0.0117
REMARK 3 S21: 0.4138 S22: -0.3392 S23: 0.0217
REMARK 3 S31: 0.5613 S32: -0.2129 S33: 0.3005
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: NULL
REMARK 3 ORIGIN FOR THE GROUP (A): 28.9300 38.5663 31.3760
REMARK 3 T TENSOR
REMARK 3 T11: 0.4350 T22: 0.5469
REMARK 3 T33: 0.6871 T12: -0.1251
REMARK 3 T13: 0.0926 T23: 0.0006
REMARK 3 L TENSOR
REMARK 3 L11: 5.4209 L22: 4.4820
REMARK 3 L33: 6.5643 L12: -0.4717
REMARK 3 L13: 1.8872 L23: -1.1556
REMARK 3 S TENSOR
REMARK 3 S11: 0.0204 S12: 0.4498 S13: -0.5152
REMARK 3 S21: -0.3560 S22: 0.4026 S23: 0.4474
REMARK 3 S31: 0.1249 S32: -0.2072 S33: -0.5082
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6K1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAY-19.
REMARK 100 THE DEPOSITION ID IS D_1300012038.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 25-OCT-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SPRING-8
REMARK 200 BEAMLINE : BL32XU
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28018
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600
REMARK 200 RESOLUTION RANGE LOW (A) : 48.469
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 19.28
REMARK 200 R MERGE (I) : 0.32200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6700
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9
REMARK 200 DATA REDUNDANCY IN SHELL : 19.52
REMARK 200 R MERGE FOR SHELL (I) : 5.83500
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.740
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 70.88
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.22
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG300, 150 MM NAH2PO4,10 MM TCEP,
REMARK 280 100 MM BIS-TRIS, PH 7.5, LIPIDIC CUBIC PHASE, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z
REMARK 290 3555 -Y,X,Z
REMARK 290 4555 Y,-X,Z
REMARK 290 5555 -X,Y,-Z
REMARK 290 6555 X,-Y,-Z
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z
REMARK 290 9555 X+1/2,Y+1/2,Z+1/2
REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2
REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2
REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2
REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2
REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2
REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2
REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.95500
REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.95500
REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 145.79500
REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 54.95500
REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 54.95500
REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 145.79500
REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.95500
REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 54.95500
REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 145.79500
REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 54.95500
REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.95500
REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 145.79500
REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 54.95500
REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.95500
REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 145.79500
REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.95500
REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 54.95500
REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 145.79500
REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 54.95500
REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 54.95500
REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 145.79500
REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.95500
REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.95500
REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 145.79500
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 21230 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 63
REMARK 465 GLY A 64
REMARK 465 GLY A 65
REMARK 465 LEU A 66
REMARK 465 ALA A 67
REMARK 465 PRO A 68
REMARK 465 ALA A 69
REMARK 465 GLU A 70
REMARK 465 VAL A 71
REMARK 465 PRO A 72
REMARK 465 LYS A 73
REMARK 465 GLY A 74
REMARK 465 ASP A 75
REMARK 465 ARG A 76
REMARK 465 THR A 77
REMARK 465 ALA A 78
REMARK 465 GLY A 79
REMARK 465 SER A 80
REMARK 465 PRO A 81
REMARK 465 PRO A 82
REMARK 465 ARG A 83
REMARK 465 THR A 84
REMARK 465 ILE A 85
REMARK 465 SER A 86
REMARK 465 PRO A 87
REMARK 465 PRO A 88
REMARK 465 PRO A 89
REMARK 465 CYS A 90
REMARK 465 ARG A 208
REMARK 465 ILE A 209
REMARK 465 LYS A 210
REMARK 465 GLY A 211
REMARK 465 ILE A 212
REMARK 465 GLY A 213
REMARK 465 GLY A 1012A
REMARK 465 GLY A 1012B
REMARK 465 SER A 1012C
REMARK 465 GLY A 1012D
REMARK 465 GLY A 1012E
REMARK 465 ASP A 1012F
REMARK 465 GLU A 1012G
REMARK 465 TRP A 404
REMARK 465 ALA A 405
REMARK 465 GLN A 406
REMARK 465 SER A 407
REMARK 465 PRO A 408
REMARK 465 SER A 409
REMARK 465 SER A 410
REMARK 465 GLU A 411
REMARK 465 ASN A 412
REMARK 465 LEU A 413
REMARK 465 TYR A 414
REMARK 465 PHE A 415
REMARK 465 GLN A 416
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 SER A 207 OG
REMARK 470 LYS A 216 CD CE NZ
REMARK 470 LYS A1015 CG CD CE NZ
REMARK 470 LEU A1016 CG CD1 CD2
REMARK 470 ARG A1069 CG CD NE CZ NH1 NH2
REMARK 470 ARG A 357 CG CD NE CZ NH1 NH2
REMARK 470 LYS A 391 CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PHE A 282 -58.83 -139.12
REMARK 500 LEU A 401 -66.32 -102.88
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLC A 1206
REMARK 610 OLC A 1212
REMARK 610 OLC A 1213
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue D2U A 1201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1203
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1204
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1205
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1206
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1207
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1208
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1209
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1210
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1211
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1212
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1213
DBREF 6K1Q A 66 303 UNP P24530 EDNRB_HUMAN 66 303
DBREF 6K1Q A 1012F 1111 UNP P00720 ENLYS_BPT4 61 161
DBREF 6K1Q A 311 407 UNP P24530 EDNRB_HUMAN 311 407
SEQADV 6K1Q GLY A 63 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q GLY A 64 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q GLY A 65 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q TYR A 124 UNP P24530 ARG 124 ENGINEERED MUTATION
SEQADV 6K1Q ALA A 270 UNP P24530 LYS 270 ENGINEERED MUTATION
SEQADV 6K1Q ASN A 1002 UNP P24530 LINKER
SEQADV 6K1Q ILE A 1003 UNP P24530 LINKER
SEQADV 6K1Q PHE A 1004 UNP P24530 LINKER
SEQADV 6K1Q GLU A 1005 UNP P24530 LINKER
SEQADV 6K1Q MET A 1006 UNP P24530 LINKER
SEQADV 6K1Q LEU A 1007 UNP P24530 LINKER
SEQADV 6K1Q ARG A 1008 UNP P24530 LINKER
SEQADV 6K1Q ILE A 1009 UNP P24530 LINKER
SEQADV 6K1Q ASP A 1010 UNP P24530 LINKER
SEQADV 6K1Q GLU A 1011 UNP P24530 LINKER
SEQADV 6K1Q GLY A 1012 UNP P24530 LINKER
SEQADV 6K1Q GLY A 1012A UNP P24530 LINKER
SEQADV 6K1Q GLY A 1012B UNP P24530 LINKER
SEQADV 6K1Q SER A 1012C UNP P24530 LINKER
SEQADV 6K1Q GLY A 1012D UNP P24530 LINKER
SEQADV 6K1Q GLY A 1012E UNP P24530 LINKER
SEQADV 6K1Q ALA A 1047 UNP P00720 CYS 97 ENGINEERED MUTATION
SEQADV 6K1Q ARG A 1087 UNP P00720 ILE 137 ENGINEERED MUTATION
SEQADV 6K1Q ALA A 342 UNP P24530 SER 342 ENGINEERED MUTATION
SEQADV 6K1Q ALA A 381 UNP P24530 ILE 381 ENGINEERED MUTATION
SEQADV 6K1Q ALA A 396 UNP P24530 CYS 396 ENGINEERED MUTATION
SEQADV 6K1Q ALA A 400 UNP P24530 CYS 400 ENGINEERED MUTATION
SEQADV 6K1Q ALA A 405 UNP P24530 CYS 405 ENGINEERED MUTATION
SEQADV 6K1Q PRO A 408 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q SER A 409 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q SER A 410 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q GLU A 411 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q ASN A 412 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q LEU A 413 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q TYR A 414 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q PHE A 415 UNP P24530 EXPRESSION TAG
SEQADV 6K1Q GLN A 416 UNP P24530 EXPRESSION TAG
SEQRES 1 A 464 GLY GLY GLY LEU ALA PRO ALA GLU VAL PRO LYS GLY ASP
SEQRES 2 A 464 ARG THR ALA GLY SER PRO PRO ARG THR ILE SER PRO PRO
SEQRES 3 A 464 PRO CYS GLN GLY PRO ILE GLU ILE LYS GLU THR PHE LYS
SEQRES 4 A 464 TYR ILE ASN THR VAL VAL SER CYS LEU VAL PHE VAL LEU
SEQRES 5 A 464 GLY ILE ILE GLY ASN SER THR LEU LEU TYR ILE ILE TYR
SEQRES 6 A 464 LYS ASN LYS CYS MET ARG ASN GLY PRO ASN ILE LEU ILE
SEQRES 7 A 464 ALA SER LEU ALA LEU GLY ASP LEU LEU HIS ILE VAL ILE
SEQRES 8 A 464 ASP ILE PRO ILE ASN VAL TYR LYS LEU LEU ALA GLU ASP
SEQRES 9 A 464 TRP PRO PHE GLY ALA GLU MET CYS LYS LEU VAL PRO PHE
SEQRES 10 A 464 ILE GLN LYS ALA SER VAL GLY ILE THR VAL LEU SER LEU
SEQRES 11 A 464 CYS ALA LEU SER ILE ASP ARG TYR ARG ALA VAL ALA SER
SEQRES 12 A 464 TRP SER ARG ILE LYS GLY ILE GLY VAL PRO LYS TRP THR
SEQRES 13 A 464 ALA VAL GLU ILE VAL LEU ILE TRP VAL VAL SER VAL VAL
SEQRES 14 A 464 LEU ALA VAL PRO GLU ALA ILE GLY PHE ASP ILE ILE THR
SEQRES 15 A 464 MET ASP TYR LYS GLY SER TYR LEU ARG ILE CYS LEU LEU
SEQRES 16 A 464 HIS PRO VAL GLN LYS THR ALA PHE MET GLN PHE TYR ALA
SEQRES 17 A 464 THR ALA LYS ASP TRP TRP LEU PHE SER PHE TYR PHE CYS
SEQRES 18 A 464 LEU PRO LEU ALA ILE THR ALA PHE PHE TYR THR LEU MET
SEQRES 19 A 464 THR CYS GLU MET LEU ARG LYS ASN ILE PHE GLU MET LEU
SEQRES 20 A 464 ARG ILE ASP GLU GLY GLY GLY SER GLY GLY ASP GLU ALA
SEQRES 21 A 464 GLU LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA VAL ARG
SEQRES 22 A 464 GLY ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL TYR ASP
SEQRES 23 A 464 SER LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE ASN MET
SEQRES 24 A 464 VAL PHE GLN MET GLY GLU THR GLY VAL ALA GLY PHE THR
SEQRES 25 A 464 ASN SER LEU ARG MET LEU GLN GLN LYS ARG TRP ASP GLU
SEQRES 26 A 464 ALA ALA VAL ASN LEU ALA LYS SER ARG TRP TYR ASN GLN
SEQRES 27 A 464 THR PRO ASN ARG ALA LYS ARG VAL ILE THR THR PHE ARG
SEQRES 28 A 464 THR GLY THR TRP ASP ALA TYR LEU ASN ASP HIS LEU LYS
SEQRES 29 A 464 GLN ARG ARG GLU VAL ALA LYS THR VAL PHE CYS LEU VAL
SEQRES 30 A 464 LEU VAL PHE ALA LEU CYS TRP LEU PRO LEU HIS LEU ALA
SEQRES 31 A 464 ARG ILE LEU LYS LEU THR LEU TYR ASN GLN ASN ASP PRO
SEQRES 32 A 464 ASN ARG CYS GLU LEU LEU SER PHE LEU LEU VAL LEU ASP
SEQRES 33 A 464 TYR ILE GLY ILE ASN MET ALA SER LEU ASN SER CYS ALA
SEQRES 34 A 464 ASN PRO ILE ALA LEU TYR LEU VAL SER LYS ARG PHE LYS
SEQRES 35 A 464 ASN ALA PHE LYS SER ALA LEU CYS CYS TRP ALA GLN SER
SEQRES 36 A 464 PRO SER SER GLU ASN LEU TYR PHE GLN
HET D2U A1201 43
HET PO4 A1202 5
HET PO4 A1203 5
HET PO4 A1204 5
HET PO4 A1205 5
HET OLC A1206 21
HET OLC A1207 25
HET OLC A1208 25
HET OLC A1209 25
HET OLC A1210 25
HET OLC A1211 25
HET OLC A1212 20
HET OLC A1213 20
HETNAM D2U (2~{S})-2-[[(2~{R})-2-[(3,5-DIMETHYLPHENYL)CARBONYL-
HETNAM 2 D2U METHYL-AMINO]-3-(4-PHENYLPHENYL)PROPANOYL]AMINO]-3-
HETNAM 3 D2U (1~{H}-INDOL-3-YL)PROPANOIC ACID
HETNAM PO4 PHOSPHATE ION
HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETSYN OLC 1-OLEOYL-R-GLYCEROL
FORMUL 2 D2U C36 H35 N3 O4
FORMUL 3 PO4 4(O4 P 3-)
FORMUL 7 OLC 8(C21 H40 O4)
FORMUL 15 HOH *34(H2 O)
HELIX 1 AA1 GLN A 91 ASN A 129 1 39
HELIX 2 AA2 LYS A 130 ARG A 133 5 4
HELIX 3 AA3 ASN A 134 ALA A 164 1 31
HELIX 4 AA4 PHE A 169 ALA A 204 1 36
HELIX 5 AA5 PRO A 215 GLY A 239 1 25
HELIX 6 AA6 THR A 263 PHE A 282 1 20
HELIX 7 AA7 PHE A 282 GLY A 1012 1 33
HELIX 8 AA8 LEU A 1016 ASN A 1031 1 16
HELIX 9 AA9 LEU A 1034 LEU A 1041 1 8
HELIX 10 AB1 ASP A 1042 GLY A 1063 1 22
HELIX 11 AB2 PHE A 1064 GLN A 1073 1 10
HELIX 12 AB3 ARG A 1075 LYS A 1085 1 11
HELIX 13 AB4 SER A 1086 THR A 1092 1 7
HELIX 14 AB5 THR A 1092 GLY A 1106 1 15
HELIX 15 AB6 ASN A 312 TYR A 350 1 39
HELIX 16 AB7 ASN A 353 SER A 390 1 38
HELIX 17 AB8 SER A 390 LEU A 401 1 12
SHEET 1 AA1 2 PHE A 240 TYR A 247 0
SHEET 2 AA1 2 SER A 250 LEU A 257 -1 O ILE A 254 N ILE A 243
SSBOND 1 CYS A 174 CYS A 255 1555 1555 2.00
SITE 1 AC1 20 ASP A 147 HIS A 150 ASN A 158 LYS A 161
SITE 2 AC1 20 VAL A 177 PRO A 178 GLN A 181 LYS A 182
SITE 3 AC1 20 SER A 184 VAL A 185 THR A 188 PHE A 240
SITE 4 AC1 20 TYR A 281 TRP A 336 LEU A 339 ARG A 343
SITE 5 AC1 20 ALA A 375 ASN A 378 SER A 379 HOH A1311
SITE 1 AC2 5 ILE A1003 TYR A1038 ALA A1043 ARG A1046
SITE 2 AC2 5 ILE A1050
SITE 1 AC3 4 CYS A 131 ARG A 392 ASN A 395 HOH A1313
SITE 1 AC4 6 ASN A 312 ASP A 313 ASP A1010 ARG A1095
SITE 2 AC4 6 ARG A1098 HOH A1301
SITE 1 AC5 1 LYS A 398
SITE 1 AC6 8 GLU A 98 LYS A 101 TYR A 102 LEU A 163
SITE 2 AC6 8 LEU A 232 THR A 263 PHE A 265 TYR A 269
SITE 1 AC7 3 TRP A 275 SER A 279 OLC A1208
SITE 1 AC8 4 TYR A 102 ALA A 264 PHE A 268 OLC A1207
SITE 1 AC9 3 ILE A 117 LEU A 145 TRP A 226
SITE 1 AD1 7 LYS A 323 VAL A 331 ALA A 381 LEU A 388
SITE 2 AD1 7 VAL A 389 LYS A 391 OLC A1211
SITE 1 AD2 6 ALA A 290 PHE A 326 LEU A 330 VAL A 331
SITE 2 AD2 6 LEU A 334 OLC A1210
SITE 1 AD3 3 ILE A 96 MET A 374 LEU A 377
SITE 1 AD4 5 PHE A 112 LEU A 149 VAL A 159 ALA A 183
SITE 2 AD4 5 VAL A 230
CRYST1 109.910 109.910 291.590 90.00 90.00 90.00 I 4 2 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009098 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009098 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003429 0.00000