HEADER STRUCTURAL PROTEIN 14-MAY-19 6K2K TITLE SOLUTION STRUCTURE OF MUL1-RING DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL UBIQUITIN LIGASE ACTIVATOR OF NFKB 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: E3 SUMO-PROTEIN LIGASE MUL1,E3 UBIQUITIN-PROTEIN LIGASE COMPND 5 MUL1,GROWTH INHIBITION AND DEATH E3 LIGASE,MITOCHONDRIAL-ANCHORED COMPND 6 PROTEIN LIGASE,MAPL,PUTATIVE NF-KAPPA-B-ACTIVATING PROTEIN 266,RING COMPND 7 FINGER PROTEIN 218,RING-TYPE E3 UBIQUITIN TRANSFERASE NFKB 1; COMPND 8 EC: 2.3.2.27; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MUL1, C1ORF166, GIDE, MAPL, MULAN, RNF218; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-4T3 KEYWDS SOLUTION STRUCTURE, E3 UBIQUITIN LIGASE, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.S.LEE,M.K.LEE,K.S.RYU,S.W.CHI REVDAT 4 15-MAY-24 6K2K 1 REMARK REVDAT 3 14-JUN-23 6K2K 1 REMARK REVDAT 2 31-JUL-19 6K2K 1 JRNL REVDAT 1 10-JUL-19 6K2K 0 JRNL AUTH M.S.LEE,S.O.LEE,M.K.LEE,G.S.YI,C.K.LEE,K.S.RYU,S.W.CHI JRNL TITL SOLUTION STRUCTURE OF MUL1-RING DOMAIN AND ITS INTERACTION JRNL TITL 2 WITH P53 TRANSACTIVATION DOMAIN. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 516 533 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 31235254 JRNL DOI 10.1016/J.BBRC.2019.06.101 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K2K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012116. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-99% 13C; U-99% 15N] REMARK 210 MITOCHONDRIAL UBIQUITIN LIGASE REMARK 210 ACTIVATOR OF NFKB 1, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HCCH-TOCSY; 3D CCH-TOCSY; 3D REMARK 210 HCCH-COSY; 3D CC(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HBCBCGCDHD; 3D REMARK 210 HBCBCGCDHDHE; 3D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, SPARKY, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 250 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 306 8.59 84.10 REMARK 500 1 GLU A 316 -63.64 -144.67 REMARK 500 1 CYS A 321 -19.22 -154.96 REMARK 500 2 SER A 297 -147.16 -148.05 REMARK 500 2 SER A 300 -167.55 -112.83 REMARK 500 2 SER A 307 -51.36 -127.09 REMARK 500 2 GLU A 316 -65.87 -144.09 REMARK 500 2 CYS A 321 -20.06 -155.44 REMARK 500 3 LYS A 299 87.61 63.49 REMARK 500 3 SER A 307 -53.36 -127.18 REMARK 500 3 GLU A 316 -63.00 -144.39 REMARK 500 3 CYS A 321 -20.08 -154.33 REMARK 500 4 LEU A 306 4.50 83.52 REMARK 500 4 GLU A 316 -66.44 -144.06 REMARK 500 4 CYS A 321 -18.46 -154.65 REMARK 500 4 ASN A 351 -105.27 -153.42 REMARK 500 5 LEU A 306 29.51 80.97 REMARK 500 5 SER A 307 -52.13 -126.56 REMARK 500 5 SER A 311 36.72 -145.36 REMARK 500 5 GLU A 316 -61.77 -144.48 REMARK 500 5 CYS A 321 -16.99 -153.14 REMARK 500 5 ASN A 351 -68.71 -156.42 REMARK 500 6 LEU A 298 -89.63 -156.83 REMARK 500 6 LYS A 299 116.57 71.89 REMARK 500 6 GLU A 316 -62.74 -143.77 REMARK 500 6 CYS A 321 -17.69 -155.65 REMARK 500 7 SER A 297 -122.02 -154.30 REMARK 500 7 SER A 300 -165.86 -100.90 REMARK 500 7 LEU A 306 4.91 83.11 REMARK 500 7 GLU A 316 -67.52 -143.93 REMARK 500 7 CYS A 321 -12.70 -153.67 REMARK 500 8 LEU A 298 -63.45 75.88 REMARK 500 8 SER A 300 -166.42 -162.59 REMARK 500 8 LEU A 306 11.35 83.49 REMARK 500 8 SER A 311 37.23 -143.26 REMARK 500 8 GLU A 316 -64.92 -143.76 REMARK 500 8 CYS A 321 -16.38 -155.27 REMARK 500 9 SER A 297 -147.40 -154.78 REMARK 500 9 SER A 300 -158.07 -114.55 REMARK 500 9 SER A 307 -54.12 -126.71 REMARK 500 9 GLU A 316 -64.44 -144.22 REMARK 500 9 CYS A 321 -20.45 -155.23 REMARK 500 10 SER A 297 -80.31 -144.67 REMARK 500 10 SER A 300 -162.85 -123.93 REMARK 500 10 LEU A 306 7.38 84.53 REMARK 500 10 GLU A 316 -63.73 -144.02 REMARK 500 10 CYS A 321 -11.73 -155.06 REMARK 500 11 LEU A 306 4.34 87.48 REMARK 500 11 SER A 311 35.81 -140.66 REMARK 500 11 GLU A 316 -64.79 -143.58 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 302 SG REMARK 620 2 CYS A 305 SG 99.6 REMARK 620 3 CYS A 323 SG 105.5 119.8 REMARK 620 4 CYS A 326 SG 106.1 114.8 109.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 317 SG REMARK 620 2 HIS A 319 ND1 111.6 REMARK 620 3 CYS A 336 SG 102.1 98.9 REMARK 620 4 CYS A 339 SG 118.1 119.9 101.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36251 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF MUL1-RING DOMAIN DBREF 6K2K A 297 352 UNP Q969V5 MUL1_HUMAN 297 352 SEQADV 6K2K GLY A 296 UNP Q969V5 EXPRESSION TAG SEQRES 1 A 57 GLY SER LEU LYS SER ALA CYS VAL VAL CYS LEU SER SER SEQRES 2 A 57 PHE LYS SER CYS VAL PHE LEU GLU CYS GLY HIS VAL CYS SEQRES 3 A 57 SER CYS THR GLU CYS TYR ARG ALA LEU PRO GLU PRO LYS SEQRES 4 A 57 LYS CYS PRO ILE CYS ARG GLN ALA ILE THR ARG VAL ILE SEQRES 5 A 57 PRO LEU TYR ASN SER HET ZN A 500 1 HET ZN A 501 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) HELIX 1 AA1 CYS A 323 LEU A 330 1 8 SHEET 1 AA1 3 VAL A 320 SER A 322 0 SHEET 2 AA1 3 CYS A 312 LEU A 315 -1 N CYS A 312 O CYS A 321 SHEET 3 AA1 3 ARG A 345 PRO A 348 -1 O ILE A 347 N VAL A 313 LINK SG CYS A 302 ZN ZN A 500 1555 1555 2.33 LINK SG CYS A 305 ZN ZN A 500 1555 1555 2.38 LINK SG CYS A 317 ZN ZN A 501 1555 1555 2.33 LINK ND1 HIS A 319 ZN ZN A 501 1555 1555 2.14 LINK SG CYS A 323 ZN ZN A 500 1555 1555 2.39 LINK SG CYS A 326 ZN ZN A 500 1555 1555 2.33 LINK SG CYS A 336 ZN ZN A 501 1555 1555 2.35 LINK SG CYS A 339 ZN ZN A 501 1555 1555 2.36 SITE 1 AC1 5 CYS A 302 CYS A 305 SER A 308 CYS A 323 SITE 2 AC1 5 CYS A 326 SITE 1 AC2 6 GLU A 316 CYS A 317 HIS A 319 CYS A 336 SITE 2 AC2 6 CYS A 339 GLN A 341 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1