HEADER OXIDOREDUCTASE 16-MAY-19 6K37 TITLE CRYSTAL STRUCTURE OF BIOU (K124A) FROM SYNECHOCYSTIS SP.PCC6803 IN TITLE 2 COMPLEX WITH NAD+ AND THE ANALOG OF REACTION INTERMEDIATE, 3-(1- TITLE 3 AMINOETHYL)-NONANEDIOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: SLR0355 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BIOU; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 GENE: SLR0355; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BIOU, BIOTIN BIOSYNTHESIS, DEHYDROGENASE, SYNECHOCYSTIS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SAKAKI,T.TOMITA,M.NISHIYAMA REVDAT 3 22-NOV-23 6K37 1 REMARK REVDAT 2 08-APR-20 6K37 1 JRNL REVDAT 1 26-FEB-20 6K37 0 JRNL AUTH K.SAKAKI,K.OHISHI,T.SHIMIZU,I.KOBAYASHI,N.MORI,K.MATSUDA, JRNL AUTH 2 T.TOMITA,H.WATANABE,K.TANAKA,T.KUZUYAMA,M.NISHIYAMA JRNL TITL A SUICIDE ENZYME CATALYZES MULTIPLE REACTIONS FOR BIOTIN JRNL TITL 2 BIOSYNTHESIS IN CYANOBACTERIA. JRNL REF NAT.CHEM.BIOL. V. 16 415 2020 JRNL REFN ESSN 1552-4469 JRNL PMID 32042199 JRNL DOI 10.1038/S41589-019-0461-9 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 9754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 486 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2050 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2447 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 18 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.04000 REMARK 3 B22 (A**2) : 1.04000 REMARK 3 B33 (A**2) : -3.38000 REMARK 3 B12 (A**2) : 0.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.347 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.257 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2551 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2368 ; 0.003 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3462 ; 1.473 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5485 ; 1.311 ; 1.591 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 7.397 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;37.496 ;23.109 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;19.746 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;11.755 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2896 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 506 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1307 ; 3.708 ; 5.596 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1306 ; 3.699 ; 5.596 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1632 ; 5.296 ; 8.391 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1633 ; 5.294 ; 8.391 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1244 ; 4.181 ; 6.160 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1242 ; 4.183 ; 6.163 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1830 ; 6.383 ; 9.040 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2723 ; 8.377 ;67.913 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2722 ; 8.378 ;67.909 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6K37 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAY-19. REMARK 100 THE DEPOSITION ID IS D_1300012213. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NW12A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10264 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6ITD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 3350, 0.2M AMMONIUM FORMATE, REMARK 280 0.1M HEPES-NAOH (PH7.0), 5MM 3-(1-AMINOETHYL)-NONANEDIOIC ACID, REMARK 280 5MM NAD+, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.92600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 65.85200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 65.85200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.92600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 LYS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 GLY A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 ASN A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 71 OD1 ASN A 260 4545 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 47 94.05 -170.35 REMARK 500 LYS A 70 -50.45 -23.15 REMARK 500 SER A 75 132.52 -176.55 REMARK 500 GLN A 77 46.71 -144.04 REMARK 500 ALA A 94 49.03 -82.94 REMARK 500 ASN A 97 59.42 -104.85 REMARK 500 ASN A 100 0.04 -58.30 REMARK 500 THR A 134 -39.55 -39.47 REMARK 500 ASN A 260 105.82 -169.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CWL A 402 DBREF 6K37 A 1 331 UNP Q55650 Q55650_SYNY3 1 331 SEQADV 6K37 MET A -21 UNP Q55650 EXPRESSION TAG SEQADV 6K37 LYS A -20 UNP Q55650 EXPRESSION TAG SEQADV 6K37 HIS A -19 UNP Q55650 EXPRESSION TAG SEQADV 6K37 HIS A -18 UNP Q55650 EXPRESSION TAG SEQADV 6K37 HIS A -17 UNP Q55650 EXPRESSION TAG SEQADV 6K37 HIS A -16 UNP Q55650 EXPRESSION TAG SEQADV 6K37 HIS A -15 UNP Q55650 EXPRESSION TAG SEQADV 6K37 HIS A -14 UNP Q55650 EXPRESSION TAG SEQADV 6K37 HIS A -13 UNP Q55650 EXPRESSION TAG SEQADV 6K37 HIS A -12 UNP Q55650 EXPRESSION TAG SEQADV 6K37 GLY A -11 UNP Q55650 EXPRESSION TAG SEQADV 6K37 GLY A -10 UNP Q55650 EXPRESSION TAG SEQADV 6K37 LEU A -9 UNP Q55650 EXPRESSION TAG SEQADV 6K37 VAL A -8 UNP Q55650 EXPRESSION TAG SEQADV 6K37 PRO A -7 UNP Q55650 EXPRESSION TAG SEQADV 6K37 ARG A -6 UNP Q55650 EXPRESSION TAG SEQADV 6K37 GLY A -5 UNP Q55650 EXPRESSION TAG SEQADV 6K37 SER A -4 UNP Q55650 EXPRESSION TAG SEQADV 6K37 HIS A -3 UNP Q55650 EXPRESSION TAG SEQADV 6K37 GLY A -2 UNP Q55650 EXPRESSION TAG SEQADV 6K37 GLY A -1 UNP Q55650 EXPRESSION TAG SEQADV 6K37 SER A 0 UNP Q55650 EXPRESSION TAG SEQADV 6K37 ALA A 124 UNP Q55650 LYS 124 ENGINEERED MUTATION SEQRES 1 A 353 MET LYS HIS HIS HIS HIS HIS HIS HIS HIS GLY GLY LEU SEQRES 2 A 353 VAL PRO ARG GLY SER HIS GLY GLY SER MET GLU ASN ASN SEQRES 3 A 353 SER LEU ALA PRO LEU ARG VAL GLY ILE LEU GLY PHE GLY SEQRES 4 A 353 GLY LEU GLY GLN ALA ALA ALA ARG LEU LEU ALA PRO LYS SEQRES 5 A 353 GLN GLU MET LYS LEU VAL ALA VAL ALA ASP ARG HIS GLY SEQRES 6 A 353 TYR LEU TYR ASP ALA ASP GLY ILE ASP VAL ASP ASN ALA SEQRES 7 A 353 VAL GLN ALA TYR THR GLN GLN GLY SER VAL GLY LYS ALA SEQRES 8 A 353 LYS LYS GLY GLN MET SER GLU GLN SER ILE GLU ASP LEU SEQRES 9 A 353 ILE GLY GLU GLY GLU VAL ASP GLY TYR PHE LEU ALA LEU SEQRES 10 A 353 PRO ASN LEU PRO ASN THR PHE MET ALA ASP VAL THR ARG SEQRES 11 A 353 GLN PHE ILE ALA SER GLY TRP GLN GLY VAL LEU VAL ASP SEQRES 12 A 353 ALA LEU ALA ARG THR SER ALA VAL GLU GLN LEU ILE THR SEQRES 13 A 353 LEU ARG GLU ASP LEU ALA GLN ALA GLY ILE THR TYR MET SEQRES 14 A 353 THR GLY CYS GLY ALA THR PRO GLY LEU LEU THR ALA ALA SEQRES 15 A 353 ALA ALA ILE ALA SER GLN SER PHE GLN GLU ILE HIS GLN SEQRES 16 A 353 VAL LYS ILE THR PHE GLY VAL GLY ILE ALA ASN TRP GLU SEQRES 17 A 353 ALA TYR ARG ALA THR ILE ARG GLU ASP ILE ALA HIS MET SEQRES 18 A 353 PRO GLY TYR ASN VAL ASP LYS ALA GLN ALA MET THR ASP SEQRES 19 A 353 ALA GLU VAL ALA ALA LEU LEU ASP GLN THR ASN GLY ILE SEQRES 20 A 353 LEU ALA LEU GLU ASP MET GLU HIS ALA ASP ASP ILE MET SEQRES 21 A 353 LEU GLU LEU ALA GLY ILE CYS HIS ARG ASP GLN VAL THR SEQRES 22 A 353 VAL GLY GLY VAL VAL ASP THR ARG ASN PRO LYS LYS PRO SEQRES 23 A 353 LEU SER THR HIS VAL LYS ILE THR GLY ARG THR PHE GLU SEQRES 24 A 353 GLY LYS ILE SER SER HIS THR PHE THR LEU GLY ASP GLU SEQRES 25 A 353 THR SER MET ALA ALA ASN VAL CYS GLY PRO ALA PHE GLY SEQRES 26 A 353 TYR LEU LYS ALA GLY TYR GLY LEU HIS ARG GLN GLY LEU SEQRES 27 A 353 LYS GLY LEU PHE THR ALA ALA ASP VAL MET PRO LYS PHE SEQRES 28 A 353 VAL ARG HET NAD A 401 44 HET CWL A 402 16 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CWL (3R)-3-[(1R)-1-AZANYLETHYL]NONANEDIOIC ACID FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 CWL C11 H21 N O4 FORMUL 4 HOH *18(H2 O) HELIX 1 AA1 GLY A 17 ALA A 28 1 12 HELIX 2 AA2 ASP A 52 GLY A 64 1 13 HELIX 3 AA3 SER A 65 ALA A 69 5 5 HELIX 4 AA4 GLN A 77 GLY A 86 1 10 HELIX 5 AA5 THR A 101 SER A 113 1 13 HELIX 6 AA6 ARG A 125 LEU A 135 1 11 HELIX 7 AA7 LEU A 135 ALA A 142 1 8 HELIX 8 AA8 GLY A 155 SER A 165 1 11 HELIX 9 AA9 GLN A 166 PHE A 168 5 3 HELIX 10 AB1 ASN A 184 ALA A 187 5 4 HELIX 11 AB2 TYR A 188 MET A 199 1 12 HELIX 12 AB3 ASN A 203 MET A 210 1 8 HELIX 13 AB4 THR A 211 THR A 222 1 12 HELIX 14 AB5 ALA A 234 ALA A 242 1 9 HELIX 15 AB6 HIS A 246 ASP A 248 5 3 HELIX 16 AB7 SER A 292 GLN A 314 1 23 SHEET 1 AA1 8 GLN A 73 MET A 74 0 SHEET 2 AA1 8 GLY A 43 TYR A 46 -1 N TYR A 44 O GLN A 73 SHEET 3 AA1 8 MET A 33 ASP A 40 -1 N VAL A 38 O LEU A 45 SHEET 4 AA1 8 LEU A 9 LEU A 14 1 N LEU A 9 O LYS A 34 SHEET 5 AA1 8 GLY A 90 LEU A 93 1 O PHE A 92 N GLY A 12 SHEET 6 AA1 8 GLY A 117 ASP A 121 1 O VAL A 120 N LEU A 93 SHEET 7 AA1 8 ILE A 144 THR A 148 1 O MET A 147 N LEU A 119 SHEET 8 AA1 8 GLY A 318 THR A 321 1 O GLY A 318 N TYR A 146 SHEET 1 AA2 5 ILE A 225 LEU A 228 0 SHEET 2 AA2 5 VAL A 250 ASP A 257 -1 O GLY A 254 N LEU A 228 SHEET 3 AA2 5 GLU A 170 GLY A 181 1 N ILE A 176 O THR A 251 SHEET 4 AA2 5 HIS A 268 ARG A 274 -1 O THR A 272 N HIS A 172 SHEET 5 AA2 5 ILE A 280 THR A 286 -1 O HIS A 283 N ILE A 271 CISPEP 1 LEU A 98 PRO A 99 0 -1.45 CISPEP 2 THR A 153 PRO A 154 0 0.14 SITE 1 AC1 24 GLY A 15 PHE A 16 GLY A 17 GLY A 18 SITE 2 AC1 24 LEU A 19 ASP A 40 ARG A 41 TYR A 60 SITE 3 AC1 24 LEU A 95 PRO A 96 ASN A 97 PHE A 102 SITE 4 AC1 24 ALA A 122 ALA A 152 THR A 153 PRO A 154 SITE 5 AC1 24 TYR A 188 ARG A 189 ALA A 190 THR A 191 SITE 6 AC1 24 GLU A 194 VAL A 297 CWL A 402 HOH A 505 SITE 1 AC2 14 ALA A 124 ALA A 152 THR A 153 PHE A 178 SITE 2 AC2 14 GLY A 179 VAL A 180 THR A 191 ASP A 195 SITE 3 AC2 14 LYS A 263 THR A 267 MET A 293 ASN A 296 SITE 4 AC2 14 NAD A 401 HOH A 510 CRYST1 70.414 70.414 98.778 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014202 0.008199 0.000000 0.00000 SCALE2 0.000000 0.016399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010124 0.00000