HEADER OXIDOREDUCTASE 17-MAY-19 6K3E TITLE LSD1/CO-REST STRUCTURE WITH AN INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BRAF35-HDAC COMPLEX PROTEIN BHC110,FLAVIN-CONTAINING AMINE COMPND 5 OXIDASE DOMAIN-CONTAINING PROTEIN 2; COMPND 6 EC: 1.-.-.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: REST COREPRESSOR 1; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: PROTEIN COREST; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KDM1A, AOF2, KDM1, KIAA0601, LSD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: CODON PLUS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: RCOR1, KIAA0071, RCOR; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, LSD1, COREST, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WANG REVDAT 3 29-NOV-23 6K3E 1 COMPND SOURCE JRNL REMARK REVDAT 3 2 1 HET HETNAM HETSYN FORMUL REVDAT 3 3 1 HELIX SHEET SITE ATOM REVDAT 2 22-NOV-23 6K3E 1 REMARK REVDAT 1 20-MAY-20 6K3E 0 JRNL AUTH J.WANG JRNL TITL LSD1/CO-REST STRUCTURE WITH AN INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 76.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 55234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2828 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4099 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.4320 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 222 REMARK 3 SOLVENT ATOMS : 8 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 107.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.02000 REMARK 3 B22 (A**2) : -7.72000 REMARK 3 B33 (A**2) : -3.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.260 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.110 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6585 ; 0.011 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6209 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8889 ; 1.909 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14420 ; 1.274 ; 1.592 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 792 ; 8.328 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 336 ;36.939 ;22.679 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1125 ;21.188 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;18.758 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 838 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7206 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1315 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3176 ;10.925 ;10.921 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3173 ;10.919 ;10.919 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3964 ;15.103 ;16.392 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3965 ;15.102 ;16.393 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3409 ;10.992 ;11.950 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3410 ;10.991 ;11.951 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4923 ;15.844 ;17.460 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7257 ;18.993 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7258 ;18.992 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6K3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012159. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58422 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 76.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 1.06400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5H6Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 82.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 7.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 36% TACSIMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 60.75500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 89.72000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 117.20500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 60.75500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 89.72000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.20500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 60.75500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 89.72000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.20500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 60.75500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 89.72000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 117.20500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 172 REMARK 465 GLY B 301 REMARK 465 SER B 302 REMARK 465 SER B 303 REMARK 465 GLY B 304 REMARK 465 SER B 305 REMARK 465 ALA B 306 REMARK 465 SER B 307 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 308 O3' D3U A 912 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 224 93.52 -165.51 REMARK 500 SER A 244 -82.69 -46.93 REMARK 500 ILE A 270 -60.62 -103.65 REMARK 500 PRO A 274 118.07 -34.70 REMARK 500 SER A 286 42.83 -104.00 REMARK 500 LYS A 322 125.80 177.93 REMARK 500 VAL A 326 114.55 -160.77 REMARK 500 THR A 335 36.95 -87.12 REMARK 500 ASN A 350 72.55 -66.95 REMARK 500 TYR A 363 87.93 -163.59 REMARK 500 ALA A 369 175.00 -39.26 REMARK 500 GLU A 373 -66.65 -26.31 REMARK 500 ASP A 397 74.59 40.57 REMARK 500 PHE A 398 75.95 -110.06 REMARK 500 ASN A 403 -34.20 92.74 REMARK 500 LYS A 424 -70.10 -64.29 REMARK 500 ASP A 425 -37.05 -26.33 REMARK 500 ASN A 450 38.83 -77.72 REMARK 500 LEU A 451 -47.87 -146.81 REMARK 500 GLU A 453 -71.61 -67.82 REMARK 500 LYS A 456 -72.66 -44.64 REMARK 500 GLU A 457 -71.19 -30.05 REMARK 500 VAL A 468 81.94 -36.76 REMARK 500 SER A 482 -74.66 -37.28 REMARK 500 LYS A 492 -70.37 -60.57 REMARK 500 LYS A 507 -34.65 -34.10 REMARK 500 PRO A 516 157.51 -41.23 REMARK 500 SER A 517 128.77 -35.10 REMARK 500 ARG A 526 -30.16 -38.90 REMARK 500 ALA A 597 -39.83 -36.82 REMARK 500 GLN A 632 126.51 -36.94 REMARK 500 LEU A 659 109.48 178.77 REMARK 500 LEU A 697 10.32 -150.37 REMARK 500 ARG A 726 -26.99 -39.34 REMARK 500 ALA A 729 -63.66 -28.91 REMARK 500 ARG A 750 64.37 -152.81 REMARK 500 ALA A 757 -50.60 -153.71 REMARK 500 GLN A 791 113.66 -29.69 REMARK 500 ILE A 793 142.05 -34.44 REMARK 500 TYR A 807 48.33 -147.36 REMARK 500 ALA A 809 46.56 39.03 REMARK 500 HIS A 812 -37.31 -39.12 REMARK 500 PRO B 311 150.54 -45.73 REMARK 500 LEU B 316 86.14 -154.02 REMARK 500 THR B 329 45.83 -141.11 REMARK 500 ALA B 331 -79.09 -36.58 REMARK 500 THR B 333 -77.64 -61.99 REMARK 500 GLN B 337 -47.95 -29.07 REMARK 500 ASN B 351 -75.65 -43.06 REMARK 500 PRO B 373 150.28 -30.46 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 336 LEU A 337 -142.29 REMARK 500 PRO A 792 ILE A 793 143.77 REMARK 500 REMARK 500 REMARK: NULL DBREF 6K3E A 172 833 UNP O60341 KDM1A_HUMAN 172 833 DBREF 6K3E B 308 440 UNP Q9UKL0 RCOR1_HUMAN 311 443 SEQADV 6K3E GLY B 301 UNP Q9UKL0 EXPRESSION TAG SEQADV 6K3E SER B 302 UNP Q9UKL0 EXPRESSION TAG SEQADV 6K3E SER B 303 UNP Q9UKL0 EXPRESSION TAG SEQADV 6K3E GLY B 304 UNP Q9UKL0 EXPRESSION TAG SEQADV 6K3E SER B 305 UNP Q9UKL0 EXPRESSION TAG SEQADV 6K3E ALA B 306 UNP Q9UKL0 EXPRESSION TAG SEQADV 6K3E SER B 307 UNP Q9UKL0 EXPRESSION TAG SEQRES 1 A 662 SER GLY VAL GLU GLY ALA ALA PHE GLN SER ARG LEU PRO SEQRES 2 A 662 HIS ASP ARG MET THR SER GLN GLU ALA ALA CYS PHE PRO SEQRES 3 A 662 ASP ILE ILE SER GLY PRO GLN GLN THR GLN LYS VAL PHE SEQRES 4 A 662 LEU PHE ILE ARG ASN ARG THR LEU GLN LEU TRP LEU ASP SEQRES 5 A 662 ASN PRO LYS ILE GLN LEU THR PHE GLU ALA THR LEU GLN SEQRES 6 A 662 GLN LEU GLU ALA PRO TYR ASN SER ASP THR VAL LEU VAL SEQRES 7 A 662 HIS ARG VAL HIS SER TYR LEU GLU ARG HIS GLY LEU ILE SEQRES 8 A 662 ASN PHE GLY ILE TYR LYS ARG ILE LYS PRO LEU PRO THR SEQRES 9 A 662 LYS LYS THR GLY LYS VAL ILE ILE ILE GLY SER GLY VAL SEQRES 10 A 662 SER GLY LEU ALA ALA ALA ARG GLN LEU GLN SER PHE GLY SEQRES 11 A 662 MET ASP VAL THR LEU LEU GLU ALA ARG ASP ARG VAL GLY SEQRES 12 A 662 GLY ARG VAL ALA THR PHE ARG LYS GLY ASN TYR VAL ALA SEQRES 13 A 662 ASP LEU GLY ALA MET VAL VAL THR GLY LEU GLY GLY ASN SEQRES 14 A 662 PRO MET ALA VAL VAL SER LYS GLN VAL ASN MET GLU LEU SEQRES 15 A 662 ALA LYS ILE LYS GLN LYS CYS PRO LEU TYR GLU ALA ASN SEQRES 16 A 662 GLY GLN ALA VAL PRO LYS GLU LYS ASP GLU MET VAL GLU SEQRES 17 A 662 GLN GLU PHE ASN ARG LEU LEU GLU ALA THR SER TYR LEU SEQRES 18 A 662 SER HIS GLN LEU ASP PHE ASN VAL LEU ASN ASN LYS PRO SEQRES 19 A 662 VAL SER LEU GLY GLN ALA LEU GLU VAL VAL ILE GLN LEU SEQRES 20 A 662 GLN GLU LYS HIS VAL LYS ASP GLU GLN ILE GLU HIS TRP SEQRES 21 A 662 LYS LYS ILE VAL LYS THR GLN GLU GLU LEU LYS GLU LEU SEQRES 22 A 662 LEU ASN LYS MET VAL ASN LEU LYS GLU LYS ILE LYS GLU SEQRES 23 A 662 LEU HIS GLN GLN TYR LYS GLU ALA SER GLU VAL LYS PRO SEQRES 24 A 662 PRO ARG ASP ILE THR ALA GLU PHE LEU VAL LYS SER LYS SEQRES 25 A 662 HIS ARG ASP LEU THR ALA LEU CYS LYS GLU TYR ASP GLU SEQRES 26 A 662 LEU ALA GLU THR GLN GLY LYS LEU GLU GLU LYS LEU GLN SEQRES 27 A 662 GLU LEU GLU ALA ASN PRO PRO SER ASP VAL TYR LEU SER SEQRES 28 A 662 SER ARG ASP ARG GLN ILE LEU ASP TRP HIS PHE ALA ASN SEQRES 29 A 662 LEU GLU PHE ALA ASN ALA THR PRO LEU SER THR LEU SER SEQRES 30 A 662 LEU LYS HIS TRP ASP GLN ASP ASP ASP PHE GLU PHE THR SEQRES 31 A 662 GLY SER HIS LEU THR VAL ARG ASN GLY TYR SER CYS VAL SEQRES 32 A 662 PRO VAL ALA LEU ALA GLU GLY LEU ASP ILE LYS LEU ASN SEQRES 33 A 662 THR ALA VAL ARG GLN VAL ARG TYR THR ALA SER GLY CYS SEQRES 34 A 662 GLU VAL ILE ALA VAL ASN THR ARG SER THR SER GLN THR SEQRES 35 A 662 PHE ILE TYR LYS CYS ASP ALA VAL LEU CYS THR LEU PRO SEQRES 36 A 662 LEU GLY VAL LEU LYS GLN GLN PRO PRO ALA VAL GLN PHE SEQRES 37 A 662 VAL PRO PRO LEU PRO GLU TRP LYS THR SER ALA VAL GLN SEQRES 38 A 662 ARG MET GLY PHE GLY ASN LEU ASN LYS VAL VAL LEU CYS SEQRES 39 A 662 PHE ASP ARG VAL PHE TRP ASP PRO SER VAL ASN LEU PHE SEQRES 40 A 662 GLY HIS VAL GLY SER THR THR ALA SER ARG GLY GLU LEU SEQRES 41 A 662 PHE LEU PHE TRP ASN LEU TYR LYS ALA PRO ILE LEU LEU SEQRES 42 A 662 ALA LEU VAL ALA GLY GLU ALA ALA GLY ILE MET GLU ASN SEQRES 43 A 662 ILE SER ASP ASP VAL ILE VAL GLY ARG CYS LEU ALA ILE SEQRES 44 A 662 LEU LYS GLY ILE PHE GLY SER SER ALA VAL PRO GLN PRO SEQRES 45 A 662 LYS GLU THR VAL VAL SER ARG TRP ARG ALA ASP PRO TRP SEQRES 46 A 662 ALA ARG GLY SER TYR SER TYR VAL ALA ALA GLY SER SER SEQRES 47 A 662 GLY ASN ASP TYR ASP LEU MET ALA GLN PRO ILE THR PRO SEQRES 48 A 662 GLY PRO SER ILE PRO GLY ALA PRO GLN PRO ILE PRO ARG SEQRES 49 A 662 LEU PHE PHE ALA GLY GLU HIS THR ILE ARG ASN TYR PRO SEQRES 50 A 662 ALA THR VAL HIS GLY ALA LEU LEU SER GLY LEU ARG GLU SEQRES 51 A 662 ALA GLY ARG ILE ALA ASP GLN PHE LEU GLY ALA MET SEQRES 1 B 140 GLY SER SER GLY SER ALA SER ARG LYS PRO PRO LYS GLY SEQRES 2 B 140 MET PHE LEU SER GLN GLU ASP VAL GLU ALA VAL SER ALA SEQRES 3 B 140 ASN ALA THR ALA ALA THR THR VAL LEU ARG GLN LEU ASP SEQRES 4 B 140 MET GLU LEU VAL SER VAL LYS ARG GLN ILE GLN ASN ILE SEQRES 5 B 140 LYS GLN THR ASN SER ALA LEU LYS GLU LYS LEU ASP GLY SEQRES 6 B 140 GLY ILE GLU PRO TYR ARG LEU PRO GLU VAL ILE GLN LYS SEQRES 7 B 140 CYS ASN ALA ARG TRP THR THR GLU GLU GLN LEU LEU ALA SEQRES 8 B 140 VAL GLN ALA ILE ARG LYS TYR GLY ARG ASP PHE GLN ALA SEQRES 9 B 140 ILE SER ASP VAL ILE GLY ASN LYS SER VAL VAL GLN VAL SEQRES 10 B 140 LYS ASN PHE PHE VAL ASN TYR ARG ARG ARG PHE ASN ILE SEQRES 11 B 140 ASP GLU VAL LEU GLN GLU TRP GLU ALA GLU HET CW0 A 901 28 HET DTT A 902 8 HET ACT A 903 4 HET ACT A 904 4 HET MLA A 905 7 HET MLA A 906 7 HET MLA A 907 7 HET GOL A 908 6 HET GOL A 909 6 HET GOL A 910 6 HET GOL A 911 6 HET D3U A 912 62 HET EDO A 913 4 HET EDO A 914 4 HET EDO A 915 4 HET EDO A 916 4 HET EDO A 917 4 HET EDO A 918 4 HET EDO A 919 4 HET EDO A 920 4 HET EDO A 921 4 HET EDO A 922 4 HET EDO A 923 4 HET EDO A 924 4 HET PEG A 925 7 HET PEG A 926 7 HET PEG A 927 7 HET CL A 928 1 HET CL A 929 1 HETNAM CW0 PIPERIDIN-4-YLMETHYL 4-FLUORANYL-4-[[[(1~{R},2~{S})-2- HETNAM 2 CW0 PHENYLCYCLOPROPYL]AMINO]METHYL]PIPERIDINE-1- HETNAM 3 CW0 CARBOXYLATE HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM ACT ACETATE ION HETNAM MLA MALONIC ACID HETNAM GOL GLYCEROL HETNAM D3U 2-PCPA DERIVATIVE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETSYN DTT 1,4-DITHIOTHREITOL HETSYN MLA DICARBOXYLIC ACID C3; PROPANEDIOLIC ACID; HETSYN 2 MLA METHANEDICARBOXYLIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CW0 C22 H32 F N3 O2 FORMUL 4 DTT C4 H10 O2 S2 FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 MLA 3(C3 H4 O4) FORMUL 10 GOL 4(C3 H8 O3) FORMUL 14 D3U C36 H41 N9 O15 P2 FORMUL 15 EDO 12(C2 H6 O2) FORMUL 27 PEG 3(C4 H10 O3) FORMUL 30 CL 2(CL 1-) FORMUL 32 HOH *8(H2 O) HELIX 1 AA1 VAL A 174 SER A 181 1 8 HELIX 2 AA2 THR A 189 PHE A 196 1 8 HELIX 3 AA3 PHE A 196 GLY A 202 1 7 HELIX 4 AA4 PRO A 203 ASP A 223 1 21 HELIX 5 AA5 THR A 230 LEU A 238 1 9 HELIX 6 AA6 ASP A 245 HIS A 259 1 15 HELIX 7 AA7 GLY A 287 PHE A 300 1 14 HELIX 8 AA8 ASN A 340 GLN A 348 1 9 HELIX 9 AA9 PRO A 371 GLN A 395 1 25 HELIX 10 AB1 SER A 407 VAL A 468 1 62 HELIX 11 AB2 ASP A 473 GLU A 512 1 40 HELIX 12 AB3 ARG A 524 ALA A 541 1 18 HELIX 13 AB4 ASP A 553 GLU A 559 5 7 HELIX 14 AB5 SER A 572 GLU A 580 1 9 HELIX 15 AB6 PRO A 626 GLN A 632 1 7 HELIX 16 AB7 PRO A 644 MET A 654 1 11 HELIX 17 AB8 THR A 684 ARG A 688 5 5 HELIX 18 AB9 ALA A 708 GLU A 716 1 9 HELIX 19 AC1 SER A 719 GLY A 736 1 18 HELIX 20 AC2 SER A 769 GLN A 778 1 10 HELIX 21 AC3 GLY A 800 ILE A 804 5 5 HELIX 22 AC4 THR A 810 GLY A 831 1 22 HELIX 23 AC5 SER B 317 ALA B 326 1 10 HELIX 24 AC6 THR B 329 LYS B 362 1 34 HELIX 25 AC7 ILE B 367 ARG B 371 5 5 HELIX 26 AC8 THR B 384 GLY B 399 1 16 HELIX 27 AC9 ASP B 401 GLY B 410 1 10 HELIX 28 AD1 SER B 413 TYR B 424 1 12 HELIX 29 AD2 ASN B 429 GLN B 435 1 7 SHEET 1 AA1 5 ASP A 583 LYS A 585 0 SHEET 2 AA1 5 ASP A 303 LEU A 307 1 N LEU A 306 O LYS A 585 SHEET 3 AA1 5 LYS A 280 ILE A 284 1 N VAL A 281 O ASP A 303 SHEET 4 AA1 5 ALA A 620 CYS A 623 1 O LEU A 622 N ILE A 284 SHEET 5 AA1 5 LEU A 796 PHE A 798 1 O PHE A 797 N VAL A 621 SHEET 1 AA2 2 PHE A 320 LYS A 322 0 SHEET 2 AA2 2 TYR A 325 ALA A 327 -1 O ALA A 327 N PHE A 320 SHEET 1 AA3 3 VAL A 333 VAL A 334 0 SHEET 2 AA3 3 LEU A 565 VAL A 567 -1 O LEU A 565 N VAL A 334 SHEET 3 AA3 3 LEU A 353 LYS A 355 -1 N ALA A 354 O THR A 566 SHEET 1 AA4 2 VAL A 400 LEU A 401 0 SHEET 2 AA4 2 LYS A 404 PRO A 405 -1 O LYS A 404 N LEU A 401 SHEET 1 AA5 4 THR A 613 CYS A 618 0 SHEET 2 AA5 4 GLY A 599 ASN A 606 -1 N CYS A 600 O CYS A 618 SHEET 3 AA5 4 THR A 588 THR A 596 -1 N ARG A 594 O GLU A 601 SHEET 4 AA5 4 GLN A 638 VAL A 640 1 O VAL A 640 N VAL A 593 SHEET 1 AA6 2 GLY A 655 PHE A 656 0 SHEET 2 AA6 2 SER A 762 TYR A 763 -1 O TYR A 763 N GLY A 655 SHEET 1 AA7 5 LEU A 677 GLY A 679 0 SHEET 2 AA7 5 LEU A 693 TRP A 695 -1 O PHE A 694 N PHE A 678 SHEET 3 AA7 5 ILE A 702 VAL A 707 -1 O LEU A 706 N LEU A 693 SHEET 4 AA7 5 ASN A 660 CYS A 665 -1 N LEU A 664 O LEU A 703 SHEET 5 AA7 5 GLU A 745 VAL A 748 -1 O VAL A 747 N VAL A 663 CISPEP 1 ALA A 240 PRO A 241 0 -0.36 CISPEP 2 PRO A 470 PRO A 471 0 4.66 CISPEP 3 GLN A 633 PRO A 634 0 1.03 CISPEP 4 VAL A 640 PRO A 641 0 2.03 CRYST1 121.510 179.440 234.410 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008230 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004266 0.00000