HEADER TRANSFERASE 31-MAY-19 6K5Z TITLE STRUCTURE OF URIDYLYLTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GALACTOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROBACULUM AEROPHILUM STR. IM2; SOURCE 3 ORGANISM_TAXID: 178306; SOURCE 4 STRAIN: IM2; SOURCE 5 GENE: PAE1184; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HALF-BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SAKURABA,T.OHSHIDA,K.YONEDA,T.OHSHIMA REVDAT 3 22-NOV-23 6K5Z 1 LINK REVDAT 2 15-APR-20 6K5Z 1 JRNL REVDAT 1 18-DEC-19 6K5Z 0 JRNL AUTH T.OHSHIDA,J.HAYASHI,K.YONEDA,T.OHSHIMA,H.SAKURABA JRNL TITL UNIQUE ACTIVE SITE FORMATION IN A NOVEL GALACTOSE JRNL TITL 2 1-PHOSPHATE URIDYLYLTRANSFERASE FROM THE HYPERTHERMOPHILIC JRNL TITL 3 ARCHAEON PYROBACULUM AEROPHILUM. JRNL REF PROTEINS V. 88 669 2020 JRNL REFN ESSN 1097-0134 JRNL PMID 31693208 JRNL DOI 10.1002/PROT.25848 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 26852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1507 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1958 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 84 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.04000 REMARK 3 B22 (A**2) : 2.04000 REMARK 3 B33 (A**2) : -4.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.405 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.263 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.220 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.583 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5154 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4947 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7021 ; 1.659 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11433 ; 0.988 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 620 ; 7.186 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;37.892 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;15.383 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.812 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 760 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5695 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1143 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6K5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28397 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, MG ACETATE, MES BUFFER, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.01800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.52700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.50900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 19 REMARK 465 LEU A 20 REMARK 465 LYS A 21 REMARK 465 ARG A 22 REMARK 465 PRO A 23 REMARK 465 HIS A 315 REMARK 465 SER A 316 REMARK 465 ALA A 317 REMARK 465 ASP A 318 REMARK 465 HIS B 315 REMARK 465 SER B 316 REMARK 465 ALA B 317 REMARK 465 ASP B 318 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 235 SG CYS B 312 1.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 180 -51.67 -131.06 REMARK 500 ALA A 283 -147.41 -121.06 REMARK 500 GLU B 180 -33.11 -148.51 REMARK 500 ALA B 283 -147.33 -116.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 30 SG REMARK 620 2 CYS A 33 SG 114.5 REMARK 620 3 HIS A 86 ND1 112.4 105.0 REMARK 620 4 HIS A 138 ND1 100.6 106.8 117.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1003 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 156 OE1 REMARK 620 2 GLU A 156 OE2 56.9 REMARK 620 3 HIS A 252 ND1 85.3 92.7 REMARK 620 4 HIS A 266 NE2 95.7 150.2 96.8 REMARK 620 5 GLU A 268 OE2 169.5 113.9 101.1 91.9 REMARK 620 6 HOH A1120 O 99.0 86.4 174.0 86.9 74.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 170 SG REMARK 620 2 CYS A 173 SG 124.9 REMARK 620 3 HIS A 211 ND1 109.6 104.0 REMARK 620 4 HIS A 264 ND1 117.4 90.0 108.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 30 SG REMARK 620 2 CYS B 33 SG 116.6 REMARK 620 3 HIS B 86 ND1 100.7 108.4 REMARK 620 4 HIS B 138 ND1 113.9 110.3 105.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B1003 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 156 OE1 REMARK 620 2 GLU B 156 OE2 56.9 REMARK 620 3 HIS B 252 ND1 79.5 91.4 REMARK 620 4 HIS B 266 NE2 86.0 137.8 101.3 REMARK 620 5 GLU B 268 OE2 168.9 112.1 100.6 104.8 REMARK 620 6 HOH B1121 O 107.4 101.2 167.3 69.2 74.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 170 SG REMARK 620 2 CYS B 173 SG 109.7 REMARK 620 3 HIS B 211 ND1 110.2 115.5 REMARK 620 4 HIS B 264 ND1 110.8 96.7 113.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1004 DBREF 6K5Z A 1 318 UNP Q8ZXN7 Q8ZXN7_PYRAE 1 318 DBREF 6K5Z B 1 318 UNP Q8ZXN7 Q8ZXN7_PYRAE 1 318 SEQRES 1 A 318 MET GLU ILE ARG LYS ASP PRO PHE THR GLY GLU TYR ILE SEQRES 2 A 318 LEU VAL SER PRO HIS ARG LEU LYS ARG PRO TRP GLN PRO SEQRES 3 A 318 GLU GLY ALA CYS PRO PHE CYS PRO GLY ALA PRO GLU THR SEQRES 4 A 318 GLY ARG GLY TRP ASP VAL LEU ILE LEU PRO ASN ARG TYR SEQRES 5 A 318 PRO VAL VAL THR GLU ASN PRO PRO GLU PRO THR ALA GLU SEQRES 6 A 318 ASP LEU TYR GLU VAL ILE PRO ALA ARG GLY SER SER LEU SEQRES 7 A 318 VAL VAL VAL GLU THR PRO GLN HIS ASP VAL ASP ASP LEU SEQRES 8 A 318 SER ASP LEU PRO LEU GLY GLN ILE LYS LYS ILE LEU THR SEQRES 9 A 318 ALA VAL ALA GLU ALA GLN ARG LYS ALA GLU LYS GLU GLY SEQRES 10 A 318 ASN ALA ALA TYR PHE LEU PHE PHE ARG ASN LYS GLY LYS SEQRES 11 A 318 GLU ILE GLY VAL SER LEU THR HIS PRO HIS SER GLN ILE SEQRES 12 A 318 TYR ILE LEU PRO VAL VAL PRO PRO ARG VAL ARG ALA GLU SEQRES 13 A 318 LEU GLN ALA SER TYR GLU TRP TYR VAL LYS HIS GLY SER SEQRES 14 A 318 CYS LEU HIS CYS ARG ILE VAL GLU LYS GLU GLU LYS ARG SEQRES 15 A 318 LEU VAL PHE GLN ASN ARG ASN TRP LYS ALA PHE VAL PRO SEQRES 16 A 318 PHE TYR ALA LYS TRP PRO HIS GLU VAL HIS ILE TYR PRO SEQRES 17 A 318 LYS ARG HIS ARG SER LEU LEU THR GLU LEU THR ASP GLU SEQRES 18 A 318 GLU VAL ALA ASP LEU ALA GLU ALA LEU LYS ILE THR LEU SEQRES 19 A 318 CYS ALA LEU LYS GLN VAL ALA GLY ILE PRO MET PRO TYR SEQRES 20 A 318 ILE MET VAL LEU HIS GLN ALA PRO LEU PRO ARG PRO THR SEQRES 21 A 318 GLN TYR TYR HIS LEU HIS PHE GLU ILE TYR GLY MET TYR SEQRES 22 A 318 ARG PRO ASP GLY LYS LEU LYS HIS ALA ALA GLY ALA GLU SEQRES 23 A 318 LEU GLY ALA SER LEU PHE THR LEU ASP THR THR PRO GLU SEQRES 24 A 318 GLU THR ALA ALA ARG ILE LYS ALA ALA LEU GLN LYS CYS SEQRES 25 A 318 LEU LYS HIS SER ALA ASP SEQRES 1 B 318 MET GLU ILE ARG LYS ASP PRO PHE THR GLY GLU TYR ILE SEQRES 2 B 318 LEU VAL SER PRO HIS ARG LEU LYS ARG PRO TRP GLN PRO SEQRES 3 B 318 GLU GLY ALA CYS PRO PHE CYS PRO GLY ALA PRO GLU THR SEQRES 4 B 318 GLY ARG GLY TRP ASP VAL LEU ILE LEU PRO ASN ARG TYR SEQRES 5 B 318 PRO VAL VAL THR GLU ASN PRO PRO GLU PRO THR ALA GLU SEQRES 6 B 318 ASP LEU TYR GLU VAL ILE PRO ALA ARG GLY SER SER LEU SEQRES 7 B 318 VAL VAL VAL GLU THR PRO GLN HIS ASP VAL ASP ASP LEU SEQRES 8 B 318 SER ASP LEU PRO LEU GLY GLN ILE LYS LYS ILE LEU THR SEQRES 9 B 318 ALA VAL ALA GLU ALA GLN ARG LYS ALA GLU LYS GLU GLY SEQRES 10 B 318 ASN ALA ALA TYR PHE LEU PHE PHE ARG ASN LYS GLY LYS SEQRES 11 B 318 GLU ILE GLY VAL SER LEU THR HIS PRO HIS SER GLN ILE SEQRES 12 B 318 TYR ILE LEU PRO VAL VAL PRO PRO ARG VAL ARG ALA GLU SEQRES 13 B 318 LEU GLN ALA SER TYR GLU TRP TYR VAL LYS HIS GLY SER SEQRES 14 B 318 CYS LEU HIS CYS ARG ILE VAL GLU LYS GLU GLU LYS ARG SEQRES 15 B 318 LEU VAL PHE GLN ASN ARG ASN TRP LYS ALA PHE VAL PRO SEQRES 16 B 318 PHE TYR ALA LYS TRP PRO HIS GLU VAL HIS ILE TYR PRO SEQRES 17 B 318 LYS ARG HIS ARG SER LEU LEU THR GLU LEU THR ASP GLU SEQRES 18 B 318 GLU VAL ALA ASP LEU ALA GLU ALA LEU LYS ILE THR LEU SEQRES 19 B 318 CYS ALA LEU LYS GLN VAL ALA GLY ILE PRO MET PRO TYR SEQRES 20 B 318 ILE MET VAL LEU HIS GLN ALA PRO LEU PRO ARG PRO THR SEQRES 21 B 318 GLN TYR TYR HIS LEU HIS PHE GLU ILE TYR GLY MET TYR SEQRES 22 B 318 ARG PRO ASP GLY LYS LEU LYS HIS ALA ALA GLY ALA GLU SEQRES 23 B 318 LEU GLY ALA SER LEU PHE THR LEU ASP THR THR PRO GLU SEQRES 24 B 318 GLU THR ALA ALA ARG ILE LYS ALA ALA LEU GLN LYS CYS SEQRES 25 B 318 LEU LYS HIS SER ALA ASP HET ZN A1001 1 HET ZN A1002 1 HET FE A1003 1 HET PO4 A1004 5 HET ZN B1001 1 HET ZN B1002 1 HET FE B1003 1 HET PO4 B1004 5 HETNAM ZN ZINC ION HETNAM FE FE (III) ION HETNAM PO4 PHOSPHATE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 FE 2(FE 3+) FORMUL 6 PO4 2(O4 P 3-) FORMUL 11 HOH *84(H2 O) HELIX 1 AA1 ASP A 90 LEU A 94 5 5 HELIX 2 AA2 PRO A 95 GLY A 117 1 23 HELIX 3 AA3 GLY A 129 GLY A 133 5 5 HELIX 4 AA4 PRO A 150 GLY A 168 1 19 HELIX 5 AA5 CYS A 170 LYS A 178 1 9 HELIX 6 AA6 LEU A 214 LEU A 218 5 5 HELIX 7 AA7 THR A 219 ALA A 241 1 23 HELIX 8 AA8 ALA A 283 SER A 290 1 8 HELIX 9 AA9 THR A 297 LYS A 311 1 15 HELIX 10 AB1 ASP B 90 LEU B 94 5 5 HELIX 11 AB2 PRO B 95 GLY B 117 1 23 HELIX 12 AB3 GLY B 129 GLY B 133 5 5 HELIX 13 AB4 PRO B 150 GLY B 168 1 19 HELIX 14 AB5 CYS B 170 GLU B 179 1 10 HELIX 15 AB6 LEU B 214 LEU B 218 5 5 HELIX 16 AB7 THR B 219 ALA B 241 1 23 HELIX 17 AB8 ALA B 283 SER B 290 1 8 HELIX 18 AB9 THR B 297 LEU B 313 1 17 SHEET 1 AA1 4 VAL A 70 ILE A 71 0 SHEET 2 AA1 4 GLU A 2 LYS A 5 -1 N ILE A 3 O ILE A 71 SHEET 3 AA1 4 TYR A 12 VAL A 15 -1 O ILE A 13 N ARG A 4 SHEET 4 AA1 4 LEU B 291 LEU B 294 1 O PHE B 292 N LEU A 14 SHEET 1 AA2 9 LEU A 46 PRO A 49 0 SHEET 2 AA2 9 SER A 76 VAL A 81 -1 O VAL A 81 N LEU A 46 SHEET 3 AA2 9 HIS A 140 LEU A 146 -1 O SER A 141 N VAL A 80 SHEET 4 AA2 9 TYR A 121 LYS A 128 -1 N PHE A 125 O GLN A 142 SHEET 5 AA2 9 TYR A 247 HIS A 252 -1 O LEU A 251 N PHE A 124 SHEET 6 AA2 9 HIS A 266 GLY A 271 -1 O HIS A 266 N HIS A 252 SHEET 7 AA2 9 HIS A 202 PRO A 208 -1 N HIS A 202 O GLY A 271 SHEET 8 AA2 9 TRP A 190 PHE A 193 -1 N PHE A 193 O HIS A 205 SHEET 9 AA2 9 LEU A 183 GLN A 186 -1 N PHE A 185 O ALA A 192 SHEET 1 AA3 4 LEU A 291 LEU A 294 0 SHEET 2 AA3 4 TYR B 12 VAL B 15 1 O LEU B 14 N PHE A 292 SHEET 3 AA3 4 GLU B 2 LYS B 5 -1 N GLU B 2 O VAL B 15 SHEET 4 AA3 4 VAL B 70 ILE B 71 -1 O ILE B 71 N ILE B 3 SHEET 1 AA4 9 LEU B 46 PRO B 49 0 SHEET 2 AA4 9 SER B 76 VAL B 81 -1 O VAL B 79 N LEU B 48 SHEET 3 AA4 9 HIS B 140 LEU B 146 -1 O ILE B 145 N SER B 76 SHEET 4 AA4 9 TYR B 121 LYS B 128 -1 N LEU B 123 O TYR B 144 SHEET 5 AA4 9 TYR B 247 HIS B 252 -1 O LEU B 251 N PHE B 124 SHEET 6 AA4 9 HIS B 266 GLY B 271 -1 O HIS B 266 N HIS B 252 SHEET 7 AA4 9 HIS B 202 PRO B 208 -1 N ILE B 206 O PHE B 267 SHEET 8 AA4 9 TRP B 190 PHE B 193 -1 N LYS B 191 O TYR B 207 SHEET 9 AA4 9 LEU B 183 GLN B 186 -1 N PHE B 185 O ALA B 192 SSBOND 1 CYS A 235 CYS A 312 1555 1555 2.07 LINK SG CYS A 30 ZN ZN A1001 1555 1555 2.23 LINK SG CYS A 33 ZN ZN A1001 1555 1555 2.35 LINK ND1 HIS A 86 ZN ZN A1001 1555 1555 2.06 LINK ND1 HIS A 138 ZN ZN A1001 1555 1555 2.19 LINK OE1 GLU A 156 FE FE A1003 1555 1555 2.46 LINK OE2 GLU A 156 FE FE A1003 1555 1555 2.22 LINK SG CYS A 170 ZN ZN A1002 1555 1555 2.39 LINK SG CYS A 173 ZN ZN A1002 1555 1555 2.38 LINK ND1 HIS A 211 ZN ZN A1002 1555 1555 2.12 LINK ND1 HIS A 252 FE FE A1003 1555 1555 2.34 LINK ND1 HIS A 264 ZN ZN A1002 1555 1555 2.37 LINK NE2 HIS A 266 FE FE A1003 1555 1555 2.32 LINK OE2 GLU A 268 FE FE A1003 1555 1555 2.24 LINK FE FE A1003 O HOH A1120 1555 1555 2.44 LINK SG CYS B 30 ZN ZN B1001 1555 1555 2.30 LINK SG CYS B 33 ZN ZN B1001 1555 1555 2.39 LINK ND1 HIS B 86 ZN ZN B1001 1555 1555 2.32 LINK ND1 HIS B 138 ZN ZN B1001 1555 1555 2.22 LINK OE1 GLU B 156 FE FE B1003 1555 1555 2.41 LINK OE2 GLU B 156 FE FE B1003 1555 1555 2.21 LINK SG CYS B 170 ZN ZN B1002 1555 1555 2.54 LINK SG CYS B 173 ZN ZN B1002 1555 1555 2.32 LINK ND1 HIS B 211 ZN ZN B1002 1555 1555 1.99 LINK ND1 HIS B 252 FE FE B1003 1555 1555 2.46 LINK ND1 HIS B 264 ZN ZN B1002 1555 1555 2.68 LINK NE2 HIS B 266 FE FE B1003 1555 1555 2.44 LINK OE2 GLU B 268 FE FE B1003 1555 1555 2.25 LINK FE FE B1003 O HOH B1121 1555 1555 2.49 CISPEP 1 LEU A 256 PRO A 257 0 -15.22 CISPEP 2 LEU B 256 PRO B 257 0 -21.22 SITE 1 AC1 4 CYS A 30 CYS A 33 HIS A 86 HIS A 138 SITE 1 AC2 4 CYS A 170 CYS A 173 HIS A 211 HIS A 264 SITE 1 AC3 5 GLU A 156 HIS A 252 HIS A 266 GLU A 268 SITE 2 AC3 5 HOH A1120 SITE 1 AC4 5 VAL A 134 SER A 135 LEU A 136 HIS A 140 SITE 2 AC4 5 HOH A1101 SITE 1 AC5 4 CYS B 30 CYS B 33 HIS B 86 HIS B 138 SITE 1 AC6 4 CYS B 170 CYS B 173 HIS B 211 HIS B 264 SITE 1 AC7 5 GLU B 156 HIS B 252 HIS B 266 GLU B 268 SITE 2 AC7 5 HOH B1121 SITE 1 AC8 4 VAL B 134 SER B 135 LEU B 136 HIS B 140 CRYST1 73.194 73.194 126.036 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013662 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013662 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007934 0.00000