HEADER OXIDOREDUCTASE 13-JUN-19 6K8V TITLE CRYSTAL STRUCTURE OF N-DOMAIN OF BATERIAL MALONYL-COA REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT EPIMERASE/DEHYDRATASE:SHORT-CHAIN COMPND 3 DEHYDROGENASE/REDUCTASE SDR; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: SDR N-DOMAIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROBACTER DOKDONENSIS DSW-74; SOURCE 3 ORGANISM_TAXID: 1300349; SOURCE 4 GENE: I603_0811; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS SDR DOMAIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KIM,K.-J.KIM REVDAT 2 27-MAR-24 6K8V 1 REMARK REVDAT 1 18-MAR-20 6K8V 0 JRNL AUTH H.F.SON,S.KIM,H.SEO,J.HONG,D.LEE,K.S.JIN,S.PARK,K.J.KIM JRNL TITL STRUCTURAL INSIGHT INTO BI-FUNCTIONAL MALONYL-COA REDUCTASE. JRNL REF ENVIRON.MICROBIOL. V. 22 752 2020 JRNL REFN ESSN 1462-2920 JRNL PMID 31814251 JRNL DOI 10.1111/1462-2920.14885 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 56974 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4093 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 204 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8148 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 71 REMARK 3 SOLVENT ATOMS : 329 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.45000 REMARK 3 B22 (A**2) : -1.53000 REMARK 3 B33 (A**2) : 4.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.275 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.226 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.221 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.777 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8356 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7834 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11343 ; 1.673 ; 1.641 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18067 ; 1.309 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1090 ; 7.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 429 ;34.118 ;20.956 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1341 ;17.930 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 76 ;21.395 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1127 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9530 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1774 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6K8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012521. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60037 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.31700 REMARK 200 R SYM FOR SHELL (I) : 0.33700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, LI2SO4, TRIS, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.81850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.71100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.53600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.71100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.81850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.53600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -181.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 GLN A 14 REMARK 465 GLY A 15 REMARK 465 ASP A 16 REMARK 465 VAL A 17 REMARK 465 ARG A 563 REMARK 465 LYS A 564 REMARK 465 ALA A 565 REMARK 465 MET A 566 REMARK 465 PRO A 567 REMARK 465 LEU A 568 REMARK 465 GLU A 569 REMARK 465 HIS A 570 REMARK 465 HIS A 571 REMARK 465 HIS A 572 REMARK 465 HIS A 573 REMARK 465 HIS A 574 REMARK 465 HIS A 575 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 LYS B 5 REMARK 465 ALA B 6 REMARK 465 ALA B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 ALA B 12 REMARK 465 LEU B 13 REMARK 465 GLN B 14 REMARK 465 GLY B 15 REMARK 465 ASP B 16 REMARK 465 VAL B 17 REMARK 465 ARG B 563 REMARK 465 LYS B 564 REMARK 465 ALA B 565 REMARK 465 MET B 566 REMARK 465 PRO B 567 REMARK 465 LEU B 568 REMARK 465 GLU B 569 REMARK 465 HIS B 570 REMARK 465 HIS B 571 REMARK 465 HIS B 572 REMARK 465 HIS B 573 REMARK 465 HIS B 574 REMARK 465 HIS B 575 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 177 -141.90 -100.29 REMARK 500 TYR A 312 107.62 -56.12 REMARK 500 GLU A 428 154.83 -42.12 REMARK 500 SER B 177 -132.53 -96.43 REMARK 500 THR B 178 144.83 -172.72 REMARK 500 TYR B 185 87.99 -153.29 REMARK 500 LYS B 266 124.67 -39.44 REMARK 500 ALA B 417 126.16 -38.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1558 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A1559 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH A1560 DISTANCE = 7.93 ANGSTROMS REMARK 525 HOH B1568 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH B1569 DISTANCE = 7.89 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1307 DBREF1 6K8V A 1 567 UNP A0A1A7BFR5_9SPHN DBREF2 6K8V A A0A1A7BFR5 1 567 DBREF1 6K8V B 1 567 UNP A0A1A7BFR5_9SPHN DBREF2 6K8V B A0A1A7BFR5 1 567 SEQADV 6K8V LEU A 568 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V GLU A 569 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS A 570 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS A 571 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS A 572 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS A 573 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS A 574 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS A 575 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V LEU B 568 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V GLU B 569 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS B 570 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS B 571 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS B 572 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS B 573 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS B 574 UNP A0A1A7BFR EXPRESSION TAG SEQADV 6K8V HIS B 575 UNP A0A1A7BFR EXPRESSION TAG SEQRES 1 A 575 MET ALA LYS SER LYS ALA ALA ALA ALA ALA PRO ALA LEU SEQRES 2 A 575 GLN GLY ASP VAL PRO GLY ARG LEU ALA GLY LYS ILE ALA SEQRES 3 A 575 VAL VAL THR GLY ALA ALA GLY ASN LEU GLY GLY HIS ILE SEQRES 4 A 575 VAL THR HIS TYR LEU ALA GLU GLY ALA THR VAL VAL MET SEQRES 5 A 575 THR GLY ARG THR PRO ASP ARG THR LYS ALA ALA ALA ASP SEQRES 6 A 575 ALA LEU LEU LYS SER THR GLY ALA ASP PRO SER ARG LEU SEQRES 7 A 575 ALA THR VAL ALA LEU ASP GLY GLY ASP ILE ALA SER VAL SEQRES 8 A 575 ARG ALA ALA ILE ALA GLU VAL VAL GLN LYS PHE GLY ARG SEQRES 9 A 575 ILE ASP ILE LEU VAL ASN ASN ALA GLY SER ALA GLY PRO SEQRES 10 A 575 LYS GLN PRO ILE GLU ASN LEU PRO LEU SER PRO GLU GLU SEQRES 11 A 575 LEU ALA ALA LEU GLN LYS THR GLY SER THR ASP SER GLU SEQRES 12 A 575 THR VAL ALA ASP ALA LEU ARG ASN ILE PHE GLY VAL ALA SEQRES 13 A 575 TRP ASN VAL ALA ARG VAL ALA ALA PRO HIS ILE PRO GLU SEQRES 14 A 575 GLY GLY SER ILE ILE ASN VAL SER THR ILE PHE SER ARG SEQRES 15 A 575 THR PRO TYR TYR ALA ARG ALA ALA TYR VAL VAL PRO LYS SEQRES 16 A 575 ALA ALA MET ASN ALA TRP SER ARG GLU LEU SER LEU GLU SEQRES 17 A 575 LEU GLY PRO LYS GLY ILE ARG VAL ASN LEU VAL TYR PRO SEQRES 18 A 575 GLY PRO ILE GLU SER GLU ARG ILE ARG SER VAL PHE ALA SEQRES 19 A 575 ALA MET ASP ALA ALA ARG GLY ASP GLU ALA GLY THR THR SEQRES 20 A 575 ALA THR GLN PHE PHE ASP MET MET SER LEU GLU ARG ALA SEQRES 21 A 575 THR GLY GLY ASN GLU LYS ALA LYS THR PHE PRO THR PRO SEQRES 22 A 575 GLU ASP ILE ALA THR THR CYS VAL PHE LEU GLY SER ASP SEQRES 23 A 575 GLU SER ALA ALA TYR ASN GLY HIS ASP PHE GLU VAL THR SEQRES 24 A 575 HIS GLY MET SER VAL ARG LYS GLU GLN ARG SER THR TYR SEQRES 25 A 575 LEU ALA ARG PRO THR MET ARG SER MET ASP GLY THR GLY SEQRES 26 A 575 LEU ALA VAL LEU ILE ALA ALA GLY ASP ASP TRP GLU GLU SEQRES 27 A 575 ALA LEU GLU ILE ALA GLN VAL GLN LEU ALA CYS GLY ALA SEQRES 28 A 575 GLN VAL VAL LEU GLY LEU PRO ARG ALA ALA ASP VAL ALA SEQRES 29 A 575 ILE ALA GLU LYS ARG CYS LYS ALA LEU GLY LEU THR GLU SEQRES 30 A 575 GLY LEU SER ILE ILE ARG PHE SER ARG LYS ASP PRO ALA SEQRES 31 A 575 ALA MET GLU ALA ALA LEU GLU GLU TYR THR ARG GLY GLY SEQRES 32 A 575 THR PRO ILE SER GLY ALA LEU PHE MET PRO ALA LEU GLY SEQRES 33 A 575 ALA GLY GLU LEU SER GLY ALA VAL THR GLU ALA GLU ASP SEQRES 34 A 575 ASN ALA VAL GLU ALA LEU MET ASP ALA GLU LEU ALA GLY SEQRES 35 A 575 ASN MET ALA LEU ALA ARG THR MET SER ARG TYR TRP LYS SEQRES 36 A 575 ARG HIS ASP ASN LEU LEU GLN PRO PRO ARG PHE VAL PHE SEQRES 37 A 575 VAL SER HIS ALA SER ASP GLY LYS GLY ASP ILE TYR GLY SEQRES 38 A 575 HIS ILE LEU ARG ALA ALA THR GLU GLN LEU ILE ARG ILE SEQRES 39 A 575 TRP ARG ASP GLU SER GLU ILE ASP THR ALA HIS GLY ARG SEQRES 40 A 575 ARG ARG GLN ALA GLU TRP GLY ASN GLN ILE VAL ARG PHE SEQRES 41 A 575 THR ASN THR GLU ALA GLU ASN ILE ARG PHE THR ALA GLY SEQRES 42 A 575 HIS ALA ALA ARG ILE LEU LEU LYS GLU SER LYS LEU GLY SEQRES 43 A 575 GLU ILE THR LEU TYR VAL PRO ALA ASN ILE GLY GLU ALA SEQRES 44 A 575 THR GLY ALA ARG LYS ALA MET PRO LEU GLU HIS HIS HIS SEQRES 45 A 575 HIS HIS HIS SEQRES 1 B 575 MET ALA LYS SER LYS ALA ALA ALA ALA ALA PRO ALA LEU SEQRES 2 B 575 GLN GLY ASP VAL PRO GLY ARG LEU ALA GLY LYS ILE ALA SEQRES 3 B 575 VAL VAL THR GLY ALA ALA GLY ASN LEU GLY GLY HIS ILE SEQRES 4 B 575 VAL THR HIS TYR LEU ALA GLU GLY ALA THR VAL VAL MET SEQRES 5 B 575 THR GLY ARG THR PRO ASP ARG THR LYS ALA ALA ALA ASP SEQRES 6 B 575 ALA LEU LEU LYS SER THR GLY ALA ASP PRO SER ARG LEU SEQRES 7 B 575 ALA THR VAL ALA LEU ASP GLY GLY ASP ILE ALA SER VAL SEQRES 8 B 575 ARG ALA ALA ILE ALA GLU VAL VAL GLN LYS PHE GLY ARG SEQRES 9 B 575 ILE ASP ILE LEU VAL ASN ASN ALA GLY SER ALA GLY PRO SEQRES 10 B 575 LYS GLN PRO ILE GLU ASN LEU PRO LEU SER PRO GLU GLU SEQRES 11 B 575 LEU ALA ALA LEU GLN LYS THR GLY SER THR ASP SER GLU SEQRES 12 B 575 THR VAL ALA ASP ALA LEU ARG ASN ILE PHE GLY VAL ALA SEQRES 13 B 575 TRP ASN VAL ALA ARG VAL ALA ALA PRO HIS ILE PRO GLU SEQRES 14 B 575 GLY GLY SER ILE ILE ASN VAL SER THR ILE PHE SER ARG SEQRES 15 B 575 THR PRO TYR TYR ALA ARG ALA ALA TYR VAL VAL PRO LYS SEQRES 16 B 575 ALA ALA MET ASN ALA TRP SER ARG GLU LEU SER LEU GLU SEQRES 17 B 575 LEU GLY PRO LYS GLY ILE ARG VAL ASN LEU VAL TYR PRO SEQRES 18 B 575 GLY PRO ILE GLU SER GLU ARG ILE ARG SER VAL PHE ALA SEQRES 19 B 575 ALA MET ASP ALA ALA ARG GLY ASP GLU ALA GLY THR THR SEQRES 20 B 575 ALA THR GLN PHE PHE ASP MET MET SER LEU GLU ARG ALA SEQRES 21 B 575 THR GLY GLY ASN GLU LYS ALA LYS THR PHE PRO THR PRO SEQRES 22 B 575 GLU ASP ILE ALA THR THR CYS VAL PHE LEU GLY SER ASP SEQRES 23 B 575 GLU SER ALA ALA TYR ASN GLY HIS ASP PHE GLU VAL THR SEQRES 24 B 575 HIS GLY MET SER VAL ARG LYS GLU GLN ARG SER THR TYR SEQRES 25 B 575 LEU ALA ARG PRO THR MET ARG SER MET ASP GLY THR GLY SEQRES 26 B 575 LEU ALA VAL LEU ILE ALA ALA GLY ASP ASP TRP GLU GLU SEQRES 27 B 575 ALA LEU GLU ILE ALA GLN VAL GLN LEU ALA CYS GLY ALA SEQRES 28 B 575 GLN VAL VAL LEU GLY LEU PRO ARG ALA ALA ASP VAL ALA SEQRES 29 B 575 ILE ALA GLU LYS ARG CYS LYS ALA LEU GLY LEU THR GLU SEQRES 30 B 575 GLY LEU SER ILE ILE ARG PHE SER ARG LYS ASP PRO ALA SEQRES 31 B 575 ALA MET GLU ALA ALA LEU GLU GLU TYR THR ARG GLY GLY SEQRES 32 B 575 THR PRO ILE SER GLY ALA LEU PHE MET PRO ALA LEU GLY SEQRES 33 B 575 ALA GLY GLU LEU SER GLY ALA VAL THR GLU ALA GLU ASP SEQRES 34 B 575 ASN ALA VAL GLU ALA LEU MET ASP ALA GLU LEU ALA GLY SEQRES 35 B 575 ASN MET ALA LEU ALA ARG THR MET SER ARG TYR TRP LYS SEQRES 36 B 575 ARG HIS ASP ASN LEU LEU GLN PRO PRO ARG PHE VAL PHE SEQRES 37 B 575 VAL SER HIS ALA SER ASP GLY LYS GLY ASP ILE TYR GLY SEQRES 38 B 575 HIS ILE LEU ARG ALA ALA THR GLU GLN LEU ILE ARG ILE SEQRES 39 B 575 TRP ARG ASP GLU SER GLU ILE ASP THR ALA HIS GLY ARG SEQRES 40 B 575 ARG ARG GLN ALA GLU TRP GLY ASN GLN ILE VAL ARG PHE SEQRES 41 B 575 THR ASN THR GLU ALA GLU ASN ILE ARG PHE THR ALA GLY SEQRES 42 B 575 HIS ALA ALA ARG ILE LEU LEU LYS GLU SER LYS LEU GLY SEQRES 43 B 575 GLU ILE THR LEU TYR VAL PRO ALA ASN ILE GLY GLU ALA SEQRES 44 B 575 THR GLY ALA ARG LYS ALA MET PRO LEU GLU HIS HIS HIS SEQRES 45 B 575 HIS HIS HIS HET SO4 A1301 5 HET SO4 A1302 5 HET SO4 A1303 5 HET SO4 A1304 5 HET SO4 A1305 5 HET SO4 A1306 5 HET SO4 A1307 5 HET GOL B1301 6 HET SO4 B1302 5 HET SO4 B1303 5 HET SO4 B1304 5 HET SO4 B1305 5 HET SO4 B1306 5 HET SO4 B1307 5 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 13(O4 S 2-) FORMUL 10 GOL C3 H8 O3 FORMUL 17 HOH *329(H2 O) HELIX 1 AA1 GLY A 33 GLU A 46 1 14 HELIX 2 AA2 THR A 56 THR A 71 1 16 HELIX 3 AA3 ASP A 74 SER A 76 5 3 HELIX 4 AA4 ASP A 87 GLY A 103 1 17 HELIX 5 AA5 PRO A 120 LEU A 124 5 5 HELIX 6 AA6 SER A 127 THR A 137 1 11 HELIX 7 AA7 THR A 144 PHE A 153 1 10 HELIX 8 AA8 PHE A 153 ALA A 164 1 12 HELIX 9 AA9 PRO A 165 ILE A 167 5 3 HELIX 10 AB1 THR A 178 THR A 183 5 6 HELIX 11 AB2 ARG A 188 GLY A 210 1 23 HELIX 12 AB3 PRO A 211 GLY A 213 5 3 HELIX 13 AB4 GLU A 227 GLY A 241 1 15 HELIX 14 AB5 GLY A 245 MET A 255 1 11 HELIX 15 AB6 THR A 272 SER A 285 1 14 HELIX 16 AB7 ASP A 286 ALA A 289 5 4 HELIX 17 AB8 ASP A 335 ALA A 348 1 14 HELIX 18 AB9 ALA A 360 GLY A 374 1 15 HELIX 19 AC1 ASP A 388 GLY A 402 1 15 HELIX 20 AC2 GLU A 428 GLU A 439 1 12 HELIX 21 AC3 GLU A 439 HIS A 457 1 19 HELIX 22 AC4 ASP A 478 HIS A 505 1 28 HELIX 23 AC5 GLU A 526 LYS A 541 1 16 HELIX 24 AC6 ASN A 555 THR A 560 1 6 HELIX 25 AC7 GLY B 33 GLU B 46 1 14 HELIX 26 AC8 THR B 56 GLY B 72 1 17 HELIX 27 AC9 ASP B 74 SER B 76 5 3 HELIX 28 AD1 ASP B 87 GLY B 103 1 17 HELIX 29 AD2 PRO B 120 LEU B 124 5 5 HELIX 30 AD3 SER B 127 LYS B 136 1 10 HELIX 31 AD4 THR B 144 ALA B 164 1 21 HELIX 32 AD5 PRO B 165 ILE B 167 5 3 HELIX 33 AD6 THR B 178 THR B 183 5 6 HELIX 34 AD7 ARG B 188 GLY B 210 1 23 HELIX 35 AD8 ARG B 228 ARG B 240 1 13 HELIX 36 AD9 GLY B 245 ASP B 253 1 9 HELIX 37 AE1 THR B 272 SER B 285 1 14 HELIX 38 AE2 ASP B 286 ALA B 289 5 4 HELIX 39 AE3 ASP B 335 CYS B 349 1 15 HELIX 40 AE4 ARG B 359 ALA B 372 1 14 HELIX 41 AE5 ASP B 388 ARG B 401 1 14 HELIX 42 AE6 GLU B 428 GLU B 439 1 12 HELIX 43 AE7 GLU B 439 HIS B 457 1 19 HELIX 44 AE8 ASP B 478 HIS B 505 1 28 HELIX 45 AE9 GLU B 526 LYS B 541 1 16 HELIX 46 AF1 ASN B 555 THR B 560 1 6 SHEET 1 AA1 7 LEU A 78 ALA A 82 0 SHEET 2 AA1 7 THR A 49 GLY A 54 1 N MET A 52 O ALA A 79 SHEET 3 AA1 7 ILE A 25 VAL A 28 1 N ALA A 26 O THR A 49 SHEET 4 AA1 7 ILE A 107 ASN A 110 1 O VAL A 109 N VAL A 27 SHEET 5 AA1 7 SER A 172 VAL A 176 1 O ILE A 174 N LEU A 108 SHEET 6 AA1 7 ARG A 215 PRO A 221 1 O VAL A 219 N ASN A 175 SHEET 7 AA1 7 ASP A 295 VAL A 298 1 O PHE A 296 N TYR A 220 SHEET 1 AA2 8 ARG A 309 THR A 311 0 SHEET 2 AA2 8 THR A 549 TYR A 551 1 O TYR A 551 N SER A 310 SHEET 3 AA2 8 TRP A 513 VAL A 518 1 N GLN A 516 O LEU A 550 SHEET 4 AA2 8 ARG A 465 VAL A 469 1 N PHE A 468 O ILE A 517 SHEET 5 AA2 8 GLY A 408 PHE A 411 1 N PHE A 411 O VAL A 467 SHEET 6 AA2 8 ALA A 327 ALA A 331 1 N LEU A 329 O LEU A 410 SHEET 7 AA2 8 GLN A 352 LEU A 357 1 O GLY A 356 N ILE A 330 SHEET 8 AA2 8 LEU A 379 ARG A 383 1 O SER A 380 N VAL A 353 SHEET 1 AA3 7 LEU B 78 ALA B 82 0 SHEET 2 AA3 7 THR B 49 GLY B 54 1 N MET B 52 O ALA B 79 SHEET 3 AA3 7 ILE B 25 VAL B 28 1 N ALA B 26 O THR B 49 SHEET 4 AA3 7 ILE B 107 ASN B 110 1 O VAL B 109 N VAL B 27 SHEET 5 AA3 7 SER B 172 VAL B 176 1 O ILE B 174 N LEU B 108 SHEET 6 AA3 7 ARG B 215 PRO B 221 1 O ARG B 215 N ILE B 173 SHEET 7 AA3 7 ASP B 295 VAL B 298 1 O PHE B 296 N LEU B 218 SHEET 1 AA4 8 ARG B 309 THR B 311 0 SHEET 2 AA4 8 THR B 549 TYR B 551 1 O TYR B 551 N SER B 310 SHEET 3 AA4 8 TRP B 513 VAL B 518 1 N GLN B 516 O LEU B 550 SHEET 4 AA4 8 ARG B 465 VAL B 469 1 N PHE B 468 O ILE B 517 SHEET 5 AA4 8 GLY B 408 PHE B 411 1 N PHE B 411 O VAL B 467 SHEET 6 AA4 8 ALA B 327 ALA B 331 1 N LEU B 329 O LEU B 410 SHEET 7 AA4 8 GLN B 352 LEU B 357 1 O GLY B 356 N ILE B 330 SHEET 8 AA4 8 LEU B 379 ARG B 383 1 O ILE B 382 N LEU B 357 SITE 1 AC1 6 GLY A 30 GLY A 54 ARG A 55 ARG A 59 SITE 2 AC1 6 HOH A1412 HOH A1417 SITE 1 AC2 4 LYS A 61 ALA A 79 THR A 80 ARG B 456 SITE 1 AC3 4 GLY A 33 ARG A 59 ARG A 228 ARG B 401 SITE 1 AC4 3 ASP A 388 PRO A 389 ALA A 390 SITE 1 AC5 4 ARG A 359 ALA A 360 ARG A 383 HOH A1512 SITE 1 AC6 6 GLY A 33 ASN A 34 LEU A 35 GLY A 36 SITE 2 AC6 6 ASN A 111 HOH A1407 SITE 1 AC7 3 SER A 421 GLY A 422 LYS A 476 SITE 1 AC8 2 GLU B 393 GLU B 397 SITE 1 AC9 8 GLY B 30 GLY B 33 ASN B 34 LEU B 35 SITE 2 AC9 8 GLY B 36 ASN B 111 HOH B1403 HOH B1496 SITE 1 AD1 4 GLY B 54 ARG B 55 ARG B 59 HOH B1467 SITE 1 AD2 3 SER B 226 GLU B 227 HOH B1453 SITE 1 AD3 3 LYS B 61 ALA B 79 THR B 80 SITE 1 AD4 5 ARG B 259 THR B 261 GLY B 262 HOH B1414 SITE 2 AD4 5 HOH B1451 CRYST1 85.637 109.072 129.422 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011677 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007727 0.00000