HEADER HYDROLASE 17-JUN-19 6K9N TITLE RICE_OTUB_LIKE_CATALYTIC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN THIOESTERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: UBIQUITINYL HYDROLASE 1; COMPND 5 EC: 3.4.19.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYZA SATIVA SUBSP. JAPONICA; SOURCE 3 ORGANISM_COMMON: RICE; SOURCE 4 ORGANISM_TAXID: 39947; SOURCE 5 GENE: OSJ_28104; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEUBIQUITINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.N.LU,L.LIU,F.WANG REVDAT 4 29-NOV-23 6K9N 1 REMARK REVDAT 3 09-NOV-22 6K9N 1 JRNL REVDAT 2 08-SEP-21 6K9N 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQADV SEQRES HELIX SHEET REVDAT 2 3 1 CRYST1 ATOM REVDAT 1 24-JUN-20 6K9N 0 JRNL AUTH L.LU,X.ZHAI,X.LI,S.WANG,L.ZHANG,L.WANG,X.JIN,L.LIANG,Z.DENG, JRNL AUTH 2 Z.LI,Y.WANG,X.FU,H.HU,J.WANG,Z.MEI,Z.HE,F.WANG JRNL TITL MET1-SPECIFIC MOTIFS CONSERVED IN OTUB SUBFAMILY OF GREEN JRNL TITL 2 PLANTS ENABLE RICE OTUB1 TO HYDROLYSE MET1 UBIQUITIN CHAINS JRNL REF NAT COMMUN V. 13 4672 2022 JRNL REFN ESSN 2041-1723 JRNL DOI 10.1038/S41467-022-32364-3 REMARK 2 REMARK 2 RESOLUTION. 2.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 61932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 3028 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3800 - 6.3600 0.96 2840 148 0.1907 0.1985 REMARK 3 2 6.3600 - 5.0500 1.00 2780 150 0.1926 0.2392 REMARK 3 3 5.0500 - 4.4100 0.99 2755 164 0.1488 0.1839 REMARK 3 4 4.4100 - 4.0100 1.00 2744 134 0.1487 0.1666 REMARK 3 5 4.0100 - 3.7200 1.00 2751 128 0.1654 0.2090 REMARK 3 6 3.7200 - 3.5000 1.00 2737 155 0.1856 0.2109 REMARK 3 7 3.5000 - 3.3300 1.00 2714 137 0.1906 0.2219 REMARK 3 8 3.3300 - 3.1800 1.00 2729 141 0.2038 0.2150 REMARK 3 9 3.1800 - 3.0600 1.00 2734 132 0.1985 0.1971 REMARK 3 10 3.0600 - 2.9600 1.00 2707 130 0.1977 0.2343 REMARK 3 11 2.9600 - 2.8600 1.00 2727 119 0.2072 0.2420 REMARK 3 12 2.8600 - 2.7800 1.00 2701 150 0.2080 0.2374 REMARK 3 13 2.7800 - 2.7100 1.00 2690 132 0.2054 0.2189 REMARK 3 14 2.7100 - 2.6400 1.00 2728 132 0.1950 0.2290 REMARK 3 15 2.6400 - 2.5800 1.00 2682 135 0.1939 0.2373 REMARK 3 16 2.5800 - 2.5300 1.00 2700 142 0.2118 0.2553 REMARK 3 17 2.5300 - 2.4800 0.99 2642 145 0.2184 0.2735 REMARK 3 18 2.4800 - 2.4300 1.00 2718 144 0.2123 0.2613 REMARK 3 19 2.4300 - 2.3900 1.00 2680 116 0.2091 0.2482 REMARK 3 20 2.3900 - 2.3500 1.00 2703 137 0.2087 0.2988 REMARK 3 21 2.3500 - 2.3100 1.00 2659 160 0.2049 0.2497 REMARK 3 22 2.3100 - 2.2700 0.66 1783 97 0.2034 0.2971 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.216 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.038 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 7974 REMARK 3 ANGLE : 0.717 10754 REMARK 3 CHIRALITY : 0.045 1168 REMARK 3 PLANARITY : 0.006 1400 REMARK 3 DIHEDRAL : 5.106 1050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6K9N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9873 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62083 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 2ZFY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M POTASSIUM BROMIDE, 30% W/V REMARK 280 POLYETHYLENE GLYCOL MONOMETHYL ETHER 2,000, EVAPORATION, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.84400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.92400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 72.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.92400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.84400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 72.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 74 REMARK 465 SER A 278 REMARK 465 CYS A 279 REMARK 465 ASP A 280 REMARK 465 ALA A 281 REMARK 465 GLY A 282 REMARK 465 ALA A 301 REMARK 465 ALA A 302 REMARK 465 ALA A 303 REMARK 465 LYS B 74 REMARK 465 SER B 278 REMARK 465 CYS B 279 REMARK 465 ASP B 280 REMARK 465 ALA B 281 REMARK 465 GLY B 282 REMARK 465 GLY B 300 REMARK 465 ALA B 301 REMARK 465 ALA B 302 REMARK 465 ALA B 303 REMARK 465 LYS C 74 REMARK 465 SER C 278 REMARK 465 CYS C 279 REMARK 465 ASP C 280 REMARK 465 ALA C 281 REMARK 465 GLY C 282 REMARK 465 ASP C 299 REMARK 465 GLY C 300 REMARK 465 ALA C 301 REMARK 465 ALA C 302 REMARK 465 ALA C 303 REMARK 465 LYS D 74 REMARK 465 SER D 278 REMARK 465 CYS D 279 REMARK 465 ASP D 280 REMARK 465 ALA D 281 REMARK 465 GLY D 282 REMARK 465 ASN D 283 REMARK 465 ALA D 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 196 O HOH B 401 1.82 REMARK 500 O HOH B 473 O HOH B 488 1.83 REMARK 500 O ARG B 276 O HOH B 402 1.83 REMARK 500 OE2 GLU C 100 O HOH C 401 1.84 REMARK 500 O HOH B 447 O HOH B 462 1.88 REMARK 500 O HOH B 496 O HOH B 501 1.88 REMARK 500 OD2 ASP C 176 O HOH C 402 1.89 REMARK 500 O HOH B 503 O HOH C 489 1.90 REMARK 500 O HOH A 511 O HOH A 539 1.91 REMARK 500 OE1 GLU D 82 O HOH D 401 1.94 REMARK 500 OE2 GLU D 224 O HOH D 402 1.97 REMARK 500 O HOH C 404 O HOH C 498 1.97 REMARK 500 O HOH A 481 O HOH A 516 1.97 REMARK 500 O HOH A 418 O HOH A 488 1.99 REMARK 500 O HOH C 457 O HOH C 472 2.05 REMARK 500 O HOH A 543 O HOH B 491 2.08 REMARK 500 OE1 GLU B 136 O HOH B 403 2.10 REMARK 500 O HOH B 475 O HOH C 408 2.11 REMARK 500 O HOH C 432 O HOH C 444 2.11 REMARK 500 O HOH B 494 O HOH B 498 2.12 REMARK 500 OE1 GLU A 151 O HOH A 401 2.13 REMARK 500 O HOH A 503 O HOH A 535 2.13 REMARK 500 O HOH A 401 O HOH A 478 2.14 REMARK 500 O HOH C 443 O HOH C 473 2.15 REMARK 500 O HOH D 508 O HOH D 509 2.15 REMARK 500 NH2 ARG D 314 O HOH D 403 2.17 REMARK 500 OE1 GLU D 142 O HOH D 404 2.17 REMARK 500 OE1 GLU A 144 O HOH A 402 2.18 REMARK 500 OD1 ASP C 176 O HOH C 403 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 407 O HOH D 492 4445 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 254 -169.64 -119.88 REMARK 500 GLN B 138 24.47 48.53 REMARK 500 ASP B 139 85.98 -58.65 REMARK 500 HIS B 185 -177.74 -53.82 REMARK 500 GLU B 186 79.41 -102.14 REMARK 500 SER B 187 -3.81 172.86 REMARK 500 ARG B 222 44.28 -109.95 REMARK 500 ASP B 254 -170.00 -124.28 REMARK 500 SER C 93 -1.65 70.71 REMARK 500 ASP C 139 87.65 -69.41 REMARK 500 HIS C 185 -155.44 -110.25 REMARK 500 ARG C 222 46.84 -107.45 REMARK 500 LEU C 233 -77.85 -67.77 REMARK 500 SER D 93 -6.00 77.83 REMARK 500 ASP D 254 -169.38 -117.25 REMARK 500 LEU D 274 31.53 -94.63 REMARK 500 SER D 285 128.55 -170.74 REMARK 500 ASP D 299 -81.56 -105.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 545 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH B 506 DISTANCE = 5.96 ANGSTROMS DBREF 6K9N A 74 324 UNP B9G207 B9G207_ORYSJ 74 324 DBREF 6K9N B 74 324 UNP B9G207 B9G207_ORYSJ 74 324 DBREF 6K9N C 74 324 UNP B9G207 B9G207_ORYSJ 74 324 DBREF 6K9N D 74 324 UNP B9G207 B9G207_ORYSJ 74 324 SEQRES 1 A 251 LYS LEU PRO TYR VAL GLY ASP LYS GLU PRO LEU SER THR SEQRES 2 A 251 LEU ALA ALA GLU PHE GLN SER GLY SER PRO ILE LEU GLN SEQRES 3 A 251 GLU LYS ILE LYS LEU LEU GLY GLU GLN TYR ASP ALA LEU SEQRES 4 A 251 ARG ARG THR ARG GLY ASP GLY ASN CYS PHE TYR ARG SER SEQRES 5 A 251 PHE MET PHE SER TYR LEU GLU HIS ILE LEU GLU THR GLN SEQRES 6 A 251 ASP LYS ALA GLU VAL GLU ARG ILE LEU LYS LYS ILE GLU SEQRES 7 A 251 GLN CYS LYS LYS THR LEU ALA ASP LEU GLY TYR ILE GLU SEQRES 8 A 251 PHE THR PHE GLU ASP PHE PHE SER ILE PHE ILE ASP GLN SEQRES 9 A 251 LEU GLU SER VAL LEU GLN GLY HIS GLU SER SER ILE GLY SEQRES 10 A 251 ALA GLU GLU LEU LEU GLU ARG THR ARG ASP GLN MET VAL SEQRES 11 A 251 SER ASP TYR VAL VAL MET PHE PHE ARG PHE VAL THR SER SEQRES 12 A 251 GLY GLU ILE GLN ARG ARG ALA GLU PHE PHE GLU PRO PHE SEQRES 13 A 251 ILE SER GLY LEU THR ASN SER THR VAL VAL GLN PHE CYS SEQRES 14 A 251 LYS ALA SER VAL GLU PRO MET GLY GLU GLU SER ASP HIS SEQRES 15 A 251 VAL HIS ILE ILE ALA LEU SER ASP ALA LEU GLY VAL PRO SEQRES 16 A 251 ILE ARG VAL MET TYR LEU ASP ARG SER SER CYS ASP ALA SEQRES 17 A 251 GLY ASN ILE SER VAL ASN HIS HIS ASP PHE SER PRO GLU SEQRES 18 A 251 ALA ASN SER SER ASP GLY ALA ALA ALA ALA GLU LYS PRO SEQRES 19 A 251 TYR ILE THR LEU LEU TYR ARG PRO GLY HIS TYR ASP ILE SEQRES 20 A 251 LEU TYR PRO LYS SEQRES 1 B 251 LYS LEU PRO TYR VAL GLY ASP LYS GLU PRO LEU SER THR SEQRES 2 B 251 LEU ALA ALA GLU PHE GLN SER GLY SER PRO ILE LEU GLN SEQRES 3 B 251 GLU LYS ILE LYS LEU LEU GLY GLU GLN TYR ASP ALA LEU SEQRES 4 B 251 ARG ARG THR ARG GLY ASP GLY ASN CYS PHE TYR ARG SER SEQRES 5 B 251 PHE MET PHE SER TYR LEU GLU HIS ILE LEU GLU THR GLN SEQRES 6 B 251 ASP LYS ALA GLU VAL GLU ARG ILE LEU LYS LYS ILE GLU SEQRES 7 B 251 GLN CYS LYS LYS THR LEU ALA ASP LEU GLY TYR ILE GLU SEQRES 8 B 251 PHE THR PHE GLU ASP PHE PHE SER ILE PHE ILE ASP GLN SEQRES 9 B 251 LEU GLU SER VAL LEU GLN GLY HIS GLU SER SER ILE GLY SEQRES 10 B 251 ALA GLU GLU LEU LEU GLU ARG THR ARG ASP GLN MET VAL SEQRES 11 B 251 SER ASP TYR VAL VAL MET PHE PHE ARG PHE VAL THR SER SEQRES 12 B 251 GLY GLU ILE GLN ARG ARG ALA GLU PHE PHE GLU PRO PHE SEQRES 13 B 251 ILE SER GLY LEU THR ASN SER THR VAL VAL GLN PHE CYS SEQRES 14 B 251 LYS ALA SER VAL GLU PRO MET GLY GLU GLU SER ASP HIS SEQRES 15 B 251 VAL HIS ILE ILE ALA LEU SER ASP ALA LEU GLY VAL PRO SEQRES 16 B 251 ILE ARG VAL MET TYR LEU ASP ARG SER SER CYS ASP ALA SEQRES 17 B 251 GLY ASN ILE SER VAL ASN HIS HIS ASP PHE SER PRO GLU SEQRES 18 B 251 ALA ASN SER SER ASP GLY ALA ALA ALA ALA GLU LYS PRO SEQRES 19 B 251 TYR ILE THR LEU LEU TYR ARG PRO GLY HIS TYR ASP ILE SEQRES 20 B 251 LEU TYR PRO LYS SEQRES 1 C 251 LYS LEU PRO TYR VAL GLY ASP LYS GLU PRO LEU SER THR SEQRES 2 C 251 LEU ALA ALA GLU PHE GLN SER GLY SER PRO ILE LEU GLN SEQRES 3 C 251 GLU LYS ILE LYS LEU LEU GLY GLU GLN TYR ASP ALA LEU SEQRES 4 C 251 ARG ARG THR ARG GLY ASP GLY ASN CYS PHE TYR ARG SER SEQRES 5 C 251 PHE MET PHE SER TYR LEU GLU HIS ILE LEU GLU THR GLN SEQRES 6 C 251 ASP LYS ALA GLU VAL GLU ARG ILE LEU LYS LYS ILE GLU SEQRES 7 C 251 GLN CYS LYS LYS THR LEU ALA ASP LEU GLY TYR ILE GLU SEQRES 8 C 251 PHE THR PHE GLU ASP PHE PHE SER ILE PHE ILE ASP GLN SEQRES 9 C 251 LEU GLU SER VAL LEU GLN GLY HIS GLU SER SER ILE GLY SEQRES 10 C 251 ALA GLU GLU LEU LEU GLU ARG THR ARG ASP GLN MET VAL SEQRES 11 C 251 SER ASP TYR VAL VAL MET PHE PHE ARG PHE VAL THR SER SEQRES 12 C 251 GLY GLU ILE GLN ARG ARG ALA GLU PHE PHE GLU PRO PHE SEQRES 13 C 251 ILE SER GLY LEU THR ASN SER THR VAL VAL GLN PHE CYS SEQRES 14 C 251 LYS ALA SER VAL GLU PRO MET GLY GLU GLU SER ASP HIS SEQRES 15 C 251 VAL HIS ILE ILE ALA LEU SER ASP ALA LEU GLY VAL PRO SEQRES 16 C 251 ILE ARG VAL MET TYR LEU ASP ARG SER SER CYS ASP ALA SEQRES 17 C 251 GLY ASN ILE SER VAL ASN HIS HIS ASP PHE SER PRO GLU SEQRES 18 C 251 ALA ASN SER SER ASP GLY ALA ALA ALA ALA GLU LYS PRO SEQRES 19 C 251 TYR ILE THR LEU LEU TYR ARG PRO GLY HIS TYR ASP ILE SEQRES 20 C 251 LEU TYR PRO LYS SEQRES 1 D 251 LYS LEU PRO TYR VAL GLY ASP LYS GLU PRO LEU SER THR SEQRES 2 D 251 LEU ALA ALA GLU PHE GLN SER GLY SER PRO ILE LEU GLN SEQRES 3 D 251 GLU LYS ILE LYS LEU LEU GLY GLU GLN TYR ASP ALA LEU SEQRES 4 D 251 ARG ARG THR ARG GLY ASP GLY ASN CYS PHE TYR ARG SER SEQRES 5 D 251 PHE MET PHE SER TYR LEU GLU HIS ILE LEU GLU THR GLN SEQRES 6 D 251 ASP LYS ALA GLU VAL GLU ARG ILE LEU LYS LYS ILE GLU SEQRES 7 D 251 GLN CYS LYS LYS THR LEU ALA ASP LEU GLY TYR ILE GLU SEQRES 8 D 251 PHE THR PHE GLU ASP PHE PHE SER ILE PHE ILE ASP GLN SEQRES 9 D 251 LEU GLU SER VAL LEU GLN GLY HIS GLU SER SER ILE GLY SEQRES 10 D 251 ALA GLU GLU LEU LEU GLU ARG THR ARG ASP GLN MET VAL SEQRES 11 D 251 SER ASP TYR VAL VAL MET PHE PHE ARG PHE VAL THR SER SEQRES 12 D 251 GLY GLU ILE GLN ARG ARG ALA GLU PHE PHE GLU PRO PHE SEQRES 13 D 251 ILE SER GLY LEU THR ASN SER THR VAL VAL GLN PHE CYS SEQRES 14 D 251 LYS ALA SER VAL GLU PRO MET GLY GLU GLU SER ASP HIS SEQRES 15 D 251 VAL HIS ILE ILE ALA LEU SER ASP ALA LEU GLY VAL PRO SEQRES 16 D 251 ILE ARG VAL MET TYR LEU ASP ARG SER SER CYS ASP ALA SEQRES 17 D 251 GLY ASN ILE SER VAL ASN HIS HIS ASP PHE SER PRO GLU SEQRES 18 D 251 ALA ASN SER SER ASP GLY ALA ALA ALA ALA GLU LYS PRO SEQRES 19 D 251 TYR ILE THR LEU LEU TYR ARG PRO GLY HIS TYR ASP ILE SEQRES 20 D 251 LEU TYR PRO LYS FORMUL 5 HOH *472(H2 O) HELIX 1 AA1 LEU A 84 PHE A 91 1 8 HELIX 2 AA2 SER A 95 GLN A 108 1 14 HELIX 3 AA3 ASN A 120 GLN A 138 1 19 HELIX 4 AA4 ASP A 139 LEU A 160 1 22 HELIX 5 AA5 ILE A 163 THR A 166 5 4 HELIX 6 AA6 PHE A 167 LEU A 182 1 16 HELIX 7 AA7 GLY A 190 ARG A 199 1 10 HELIX 8 AA8 ASP A 200 ARG A 222 1 23 HELIX 9 AA9 ARG A 222 THR A 234 1 13 HELIX 10 AB1 THR A 237 VAL A 246 1 10 HELIX 11 AB2 ASP A 254 GLY A 266 1 13 HELIX 12 AB3 LEU B 84 PHE B 91 1 8 HELIX 13 AB4 SER B 95 GLN B 108 1 14 HELIX 14 AB5 ASN B 120 GLN B 138 1 19 HELIX 15 AB6 ASP B 139 LEU B 160 1 22 HELIX 16 AB7 ILE B 163 VAL B 181 1 19 HELIX 17 AB8 GLY B 190 ARG B 199 1 10 HELIX 18 AB9 ASP B 200 ARG B 222 1 23 HELIX 19 AC1 ARG B 222 THR B 234 1 13 HELIX 20 AC2 THR B 237 VAL B 246 1 10 HELIX 21 AC3 ASP B 254 GLY B 266 1 13 HELIX 22 AC4 SER B 292 SER B 297 1 6 HELIX 23 AC5 LEU C 84 PHE C 91 1 8 HELIX 24 AC6 SER C 95 GLN C 108 1 14 HELIX 25 AC7 ASN C 120 GLN C 138 1 19 HELIX 26 AC8 ASP C 139 LEU C 160 1 22 HELIX 27 AC9 ILE C 163 THR C 166 5 4 HELIX 28 AD1 PHE C 167 VAL C 181 1 15 HELIX 29 AD2 GLY C 190 ARG C 199 1 10 HELIX 30 AD3 ASP C 200 ARG C 222 1 23 HELIX 31 AD4 ARG C 222 THR C 234 1 13 HELIX 32 AD5 THR C 237 VAL C 246 1 10 HELIX 33 AD6 ASP C 254 GLY C 266 1 13 HELIX 34 AD7 LEU D 84 PHE D 91 1 8 HELIX 35 AD8 SER D 95 GLN D 108 1 14 HELIX 36 AD9 ASN D 120 GLN D 138 1 19 HELIX 37 AE1 ASP D 139 LEU D 160 1 22 HELIX 38 AE2 ILE D 163 VAL D 181 1 19 HELIX 39 AE3 GLY D 190 ASP D 200 1 11 HELIX 40 AE4 ASP D 200 ARG D 222 1 23 HELIX 41 AE5 ARG D 222 ASN D 235 1 14 HELIX 42 AE6 THR D 237 VAL D 246 1 10 HELIX 43 AE7 ASP D 254 GLY D 266 1 13 SHEET 1 AA1 6 VAL A 78 PRO A 83 0 SHEET 2 AA1 6 TYR A 109 THR A 115 -1 O ARG A 114 N GLY A 79 SHEET 3 AA1 6 HIS A 317 PRO A 323 -1 O ILE A 320 N ARG A 113 SHEET 4 AA1 6 THR A 310 ARG A 314 -1 N ARG A 314 O HIS A 317 SHEET 5 AA1 6 ILE A 269 TYR A 273 1 N MET A 272 O LEU A 311 SHEET 6 AA1 6 HIS A 288 PHE A 291 -1 O PHE A 291 N ILE A 269 SHEET 1 AA2 6 VAL B 78 PRO B 83 0 SHEET 2 AA2 6 TYR B 109 THR B 115 -1 O ARG B 114 N GLY B 79 SHEET 3 AA2 6 HIS B 317 PRO B 323 -1 O ILE B 320 N ARG B 113 SHEET 4 AA2 6 THR B 310 ARG B 314 -1 N ARG B 314 O HIS B 317 SHEET 5 AA2 6 ILE B 269 TYR B 273 1 N MET B 272 O LEU B 311 SHEET 6 AA2 6 HIS B 288 PHE B 291 -1 O PHE B 291 N ILE B 269 SHEET 1 AA3 6 GLU C 82 PRO C 83 0 SHEET 2 AA3 6 TYR C 109 ARG C 113 -1 O LEU C 112 N GLU C 82 SHEET 3 AA3 6 HIS C 317 PRO C 323 -1 O ILE C 320 N ARG C 113 SHEET 4 AA3 6 THR C 310 ARG C 314 -1 N ARG C 314 O HIS C 317 SHEET 5 AA3 6 ILE C 269 TYR C 273 1 N MET C 272 O LEU C 311 SHEET 6 AA3 6 HIS C 288 PHE C 291 -1 O PHE C 291 N ILE C 269 SHEET 1 AA4 6 VAL D 78 PRO D 83 0 SHEET 2 AA4 6 TYR D 109 THR D 115 -1 O ARG D 114 N GLY D 79 SHEET 3 AA4 6 HIS D 317 PRO D 323 -1 O ILE D 320 N ARG D 113 SHEET 4 AA4 6 THR D 310 ARG D 314 -1 N ARG D 314 O HIS D 317 SHEET 5 AA4 6 ILE D 269 TYR D 273 1 N MET D 272 O LEU D 311 SHEET 6 AA4 6 ASN D 287 PHE D 291 -1 O PHE D 291 N ILE D 269 CISPEP 1 GLN C 183 GLY C 184 0 -1.26 CRYST1 59.688 144.810 155.848 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016754 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006906 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006417 0.00000