HEADER DNA BINDING PROTEIN 26-JUN-19 6KBU TITLE CRYSTAL STRUCTURE OF YEDK COMPND MOL_ID: 1; COMPND 2 MOLECULE: SOS RESPONSE-ASSOCIATED PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: YEDK; COMPND 5 EC: 3.4.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: YEDK, C4J69_22885, ECTO6_01993, EFV06_12905, EFV16_12155, SOURCE 5 SAMEA3472108_01185, SAMEA3752559_04370; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS DNA REPAIR. ABASIC SITE., DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.WANG,H.BAO,H.HUANG REVDAT 3 22-NOV-23 6KBU 1 REMARK REVDAT 2 22-JAN-20 6KBU 1 JRNL REVDAT 1 10-JUL-19 6KBU 0 JRNL AUTH N.WANG,H.BAO,L.CHEN,Y.LIU,Y.LI,B.WU,H.HUANG JRNL TITL MOLECULAR BASIS OF ABASIC SITE SENSING IN SINGLE-STRANDED JRNL TITL 2 DNA BY THE SRAP DOMAIN OF E. COLI YEDK. JRNL REF NUCLEIC ACIDS RES. V. 47 10388 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31504793 JRNL DOI 10.1093/NAR/GKZ744 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 88.7 REMARK 3 NUMBER OF REFLECTIONS : 23970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.0916 - 4.3612 0.99 2902 151 0.1518 0.1970 REMARK 3 2 4.3612 - 3.4623 0.99 2836 139 0.1388 0.2089 REMARK 3 3 3.4623 - 3.0249 1.00 2821 165 0.1641 0.2512 REMARK 3 4 3.0249 - 2.7484 0.98 2815 131 0.1835 0.2495 REMARK 3 5 2.7484 - 2.5515 0.97 2755 157 0.2017 0.2950 REMARK 3 6 2.5515 - 2.4011 0.91 2586 147 0.1907 0.2694 REMARK 3 7 2.4011 - 2.2808 0.81 2286 133 0.1928 0.2787 REMARK 3 8 2.2808 - 2.1815 0.71 2041 87 0.1912 0.2840 REMARK 3 9 2.1815 - 2.0976 0.62 1714 104 0.1816 0.2660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3468 REMARK 3 ANGLE : 0.853 4712 REMARK 3 CHIRALITY : 0.050 488 REMARK 3 PLANARITY : 0.005 628 REMARK 3 DIHEDRAL : 12.993 2059 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7166 -7.2333 81.7856 REMARK 3 T TENSOR REMARK 3 T11: 0.1929 T22: 0.1927 REMARK 3 T33: 0.1998 T12: -0.0336 REMARK 3 T13: 0.0232 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 2.1534 L22: 3.9498 REMARK 3 L33: 2.7701 L12: -2.5593 REMARK 3 L13: 0.4383 L23: -1.1919 REMARK 3 S TENSOR REMARK 3 S11: 0.1546 S12: -0.0776 S13: 0.0065 REMARK 3 S21: -0.0952 S22: 0.1146 S23: -0.0547 REMARK 3 S31: -0.3966 S32: 0.0620 S33: -0.1931 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1328 -8.4408 90.1467 REMARK 3 T TENSOR REMARK 3 T11: 0.2255 T22: 0.2120 REMARK 3 T33: 0.2259 T12: 0.0004 REMARK 3 T13: 0.0151 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.5029 L22: 2.2084 REMARK 3 L33: 4.0364 L12: 0.5332 REMARK 3 L13: -2.4621 L23: -0.9259 REMARK 3 S TENSOR REMARK 3 S11: 0.1621 S12: -0.2890 S13: 0.2601 REMARK 3 S21: 0.4380 S22: 0.0692 S23: 0.2198 REMARK 3 S31: -0.4314 S32: -0.0094 S33: -0.2350 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 34 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3831 -20.4202 75.1739 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.1514 REMARK 3 T33: 0.1628 T12: -0.0154 REMARK 3 T13: 0.0115 T23: 0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.7765 L22: 2.4507 REMARK 3 L33: 2.2825 L12: 0.1298 REMARK 3 L13: 0.1448 L23: 0.7052 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: 0.0032 S13: 0.0020 REMARK 3 S21: 0.1036 S22: 0.0516 S23: -0.0029 REMARK 3 S31: 0.2660 S32: -0.0106 S33: -0.0278 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8676 -6.4124 70.1685 REMARK 3 T TENSOR REMARK 3 T11: 0.1988 T22: 0.2677 REMARK 3 T33: 0.2703 T12: -0.0118 REMARK 3 T13: 0.0387 T23: -0.0185 REMARK 3 L TENSOR REMARK 3 L11: 6.0416 L22: 3.5308 REMARK 3 L33: 4.0789 L12: -0.2055 REMARK 3 L13: 1.4876 L23: -1.9212 REMARK 3 S TENSOR REMARK 3 S11: -0.3644 S12: 0.1526 S13: -0.3706 REMARK 3 S21: -0.0599 S22: 0.0949 S23: -0.3364 REMARK 3 S31: 0.3611 S32: 0.3374 S33: 0.1447 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2498 -14.8785 71.4209 REMARK 3 T TENSOR REMARK 3 T11: 0.1432 T22: 0.1426 REMARK 3 T33: 0.1538 T12: 0.0180 REMARK 3 T13: 0.0128 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.8409 L22: 2.9691 REMARK 3 L33: 2.7292 L12: 1.0940 REMARK 3 L13: -0.7082 L23: -1.3631 REMARK 3 S TENSOR REMARK 3 S11: -0.0848 S12: 0.0637 S13: -0.1717 REMARK 3 S21: -0.3281 S22: -0.0487 S23: -0.1671 REMARK 3 S31: 0.1662 S32: 0.0693 S33: 0.1759 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 191 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5620 -13.1107 68.9390 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.2233 REMARK 3 T33: 0.2554 T12: 0.0409 REMARK 3 T13: -0.0463 T23: 0.0378 REMARK 3 L TENSOR REMARK 3 L11: 2.9564 L22: 4.7240 REMARK 3 L33: 6.1401 L12: 1.4682 REMARK 3 L13: -0.2786 L23: 2.5757 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.2818 S13: 0.2679 REMARK 3 S21: -0.0277 S22: -0.1615 S23: 0.4139 REMARK 3 S31: -0.0891 S32: -0.6180 S33: 0.1410 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 192 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7111 -4.7830 74.5372 REMARK 3 T TENSOR REMARK 3 T11: 0.1582 T22: 0.1959 REMARK 3 T33: 0.2389 T12: -0.0122 REMARK 3 T13: 0.0278 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 2.5681 L22: 2.0860 REMARK 3 L33: 4.2284 L12: -1.1611 REMARK 3 L13: 1.9889 L23: -2.0272 REMARK 3 S TENSOR REMARK 3 S11: -0.0225 S12: 0.0805 S13: 0.1741 REMARK 3 S21: 0.1378 S22: -0.1343 S23: -0.2873 REMARK 3 S31: -0.0733 S32: 0.3914 S33: 0.1377 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7901 -14.5290 43.2850 REMARK 3 T TENSOR REMARK 3 T11: 0.3340 T22: 0.2421 REMARK 3 T33: 0.1725 T12: 0.0121 REMARK 3 T13: 0.0190 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 6.7604 L22: 2.1344 REMARK 3 L33: 2.9269 L12: -0.6800 REMARK 3 L13: 2.4989 L23: 0.4160 REMARK 3 S TENSOR REMARK 3 S11: 0.2037 S12: 0.2426 S13: -0.2999 REMARK 3 S21: -0.3478 S22: -0.0072 S23: 0.0268 REMARK 3 S31: 0.4806 S32: 0.1280 S33: -0.1271 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7346 -9.2797 47.5219 REMARK 3 T TENSOR REMARK 3 T11: 0.2559 T22: 0.1734 REMARK 3 T33: 0.2102 T12: 0.0140 REMARK 3 T13: 0.0513 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.2187 L22: 0.5283 REMARK 3 L33: 3.0903 L12: 0.4803 REMARK 3 L13: 1.1493 L23: 0.0436 REMARK 3 S TENSOR REMARK 3 S11: 0.0894 S12: -0.3379 S13: -0.0802 REMARK 3 S21: 0.0417 S22: -0.0220 S23: 0.0007 REMARK 3 S31: 0.0011 S32: -0.0611 S33: -0.0687 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8000 -0.1122 35.3557 REMARK 3 T TENSOR REMARK 3 T11: 0.3078 T22: 0.1504 REMARK 3 T33: 0.2021 T12: 0.0159 REMARK 3 T13: 0.0624 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.7486 L22: 1.3926 REMARK 3 L33: 2.8176 L12: 0.2788 REMARK 3 L13: -0.2563 L23: -0.0733 REMARK 3 S TENSOR REMARK 3 S11: 0.1380 S12: 0.0794 S13: 0.0733 REMARK 3 S21: -0.1091 S22: -0.0075 S23: -0.0332 REMARK 3 S31: -0.2848 S32: -0.0029 S33: -0.1307 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.9693 -9.1893 31.3029 REMARK 3 T TENSOR REMARK 3 T11: 0.2180 T22: 0.2038 REMARK 3 T33: 0.1950 T12: 0.0166 REMARK 3 T13: 0.0141 T23: 0.0314 REMARK 3 L TENSOR REMARK 3 L11: 0.8374 L22: 1.4892 REMARK 3 L33: 2.5823 L12: 0.4892 REMARK 3 L13: -0.2465 L23: 0.5592 REMARK 3 S TENSOR REMARK 3 S11: -0.0665 S12: 0.1232 S13: 0.0678 REMARK 3 S21: -0.1486 S22: 0.0768 S23: 0.0523 REMARK 3 S31: -0.0899 S32: -0.2011 S33: -0.0116 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6703 -8.8565 34.2123 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.2054 REMARK 3 T33: 0.2149 T12: 0.0398 REMARK 3 T13: -0.0136 T23: -0.0466 REMARK 3 L TENSOR REMARK 3 L11: 6.0081 L22: 5.9112 REMARK 3 L33: 6.0565 L12: 2.5711 REMARK 3 L13: -0.3505 L23: -0.5450 REMARK 3 S TENSOR REMARK 3 S11: -0.0869 S12: -0.3298 S13: -0.1367 REMARK 3 S21: 0.3739 S22: -0.0157 S23: -0.4060 REMARK 3 S31: 0.0093 S32: 0.4872 S33: 0.0748 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 222 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8287 -16.7028 32.2781 REMARK 3 T TENSOR REMARK 3 T11: 0.2671 T22: 0.3172 REMARK 3 T33: 0.2191 T12: -0.0451 REMARK 3 T13: -0.0190 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 5.1437 L22: 2.0739 REMARK 3 L33: 3.3405 L12: -1.1383 REMARK 3 L13: -1.5866 L23: 0.4082 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: -0.2750 S13: 0.0444 REMARK 3 S21: 0.1102 S22: -0.0189 S23: 0.3357 REMARK 3 S31: 0.0989 S32: -0.5046 S33: 0.0805 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-19. REMARK 100 THE DEPOSITION ID IS D_1300012698. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26234 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2ICU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M DL-MALIC ACID PH7.0, 20% REMARK 280 PEG3350, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.66350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -23 REMARK 465 GLY B -22 REMARK 465 SER B -21 REMARK 465 SER B -20 REMARK 465 HIS B -19 REMARK 465 LEU B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 SER B -13 REMARK 465 SER B -12 REMARK 465 GLY B -11 REMARK 465 LEU B -10 REMARK 465 VAL B -9 REMARK 465 PRO B -8 REMARK 465 ARG B -7 REMARK 465 GLY B -6 REMARK 465 SER B -5 REMARK 465 GLU B -4 REMARK 465 ASN B -3 REMARK 465 LEU B -2 REMARK 465 TYR B -1 REMARK 465 PHE B 0 REMARK 465 GLN B 1 REMARK 465 GLY B 66 REMARK 465 TRP B 67 REMARK 465 TRP B 68 REMARK 465 GLU B 109 REMARK 465 GLY B 110 REMARK 465 ASP B 111 REMARK 465 LYS B 112 REMARK 465 MET A -23 REMARK 465 GLY A -22 REMARK 465 SER A -21 REMARK 465 SER A -20 REMARK 465 HIS A -19 REMARK 465 LEU A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 LEU A -10 REMARK 465 VAL A -9 REMARK 465 PRO A -8 REMARK 465 ARG A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 GLU A -4 REMARK 465 ASN A -3 REMARK 465 LEU A -2 REMARK 465 TYR A -1 REMARK 465 PHE A 0 REMARK 465 GLN A 1 REMARK 465 TRP A 67 REMARK 465 TRP A 68 REMARK 465 ASP A 69 REMARK 465 LYS A 70 REMARK 465 GLU A 109 REMARK 465 GLY A 110 REMARK 465 ASP A 111 REMARK 465 LYS A 112 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LYS A 108 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 503 O HOH A 521 2.10 REMARK 500 O HOH A 468 O HOH A 502 2.16 REMARK 500 O HOH B 439 O HOH B 519 2.16 REMARK 500 O HOH B 541 O HOH B 546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 4 137.35 -171.32 REMARK 500 ASP B 25 73.65 -119.00 REMARK 500 GLN B 154 -132.26 51.49 REMARK 500 GLN B 214 14.48 -141.02 REMARK 500 ARG A 4 144.49 -171.46 REMARK 500 PRO A 65 -169.02 -64.53 REMARK 500 GLU A 143 78.40 -110.97 REMARK 500 GLN A 154 -134.35 56.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 DBREF1 6KBU B 2 222 UNP A0A2S5ZH06_ECOLX DBREF2 6KBU B A0A2S5ZH06 2 222 DBREF1 6KBU A 2 222 UNP A0A2S5ZH06_ECOLX DBREF2 6KBU A A0A2S5ZH06 2 222 SEQADV 6KBU MET B -23 UNP A0A2S5ZH0 INITIATING METHIONINE SEQADV 6KBU GLY B -22 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER B -21 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER B -20 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS B -19 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU LEU B -18 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS B -17 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS B -16 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS B -15 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS B -14 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER B -13 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER B -12 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU GLY B -11 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU LEU B -10 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU VAL B -9 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU PRO B -8 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU ARG B -7 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU GLY B -6 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER B -5 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU GLU B -4 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU ASN B -3 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU LEU B -2 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU TYR B -1 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU PHE B 0 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU GLN B 1 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU MET A -23 UNP A0A2S5ZH0 INITIATING METHIONINE SEQADV 6KBU GLY A -22 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER A -21 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER A -20 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS A -19 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU LEU A -18 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS A -17 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS A -16 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS A -15 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU HIS A -14 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER A -13 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER A -12 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU GLY A -11 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU LEU A -10 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU VAL A -9 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU PRO A -8 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU ARG A -7 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU GLY A -6 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU SER A -5 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU GLU A -4 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU ASN A -3 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU LEU A -2 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU TYR A -1 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU PHE A 0 UNP A0A2S5ZH0 EXPRESSION TAG SEQADV 6KBU GLN A 1 UNP A0A2S5ZH0 EXPRESSION TAG SEQRES 1 B 246 MET GLY SER SER HIS LEU HIS HIS HIS HIS SER SER GLY SEQRES 2 B 246 LEU VAL PRO ARG GLY SER GLU ASN LEU TYR PHE GLN CYS SEQRES 3 B 246 GLY ARG PHE ALA GLN SER GLN THR ARG GLU ASP TYR LEU SEQRES 4 B 246 ALA LEU LEU ALA GLU ASP ILE GLU ARG ASP ILE PRO TYR SEQRES 5 B 246 ASP PRO GLU PRO ILE GLY ARG TYR ASN VAL ALA PRO GLY SEQRES 6 B 246 THR LYS VAL LEU LEU LEU SER GLU ARG ASP GLU HIS LEU SEQRES 7 B 246 HIS LEU ASP PRO VAL PHE TRP GLY TYR ALA PRO GLY TRP SEQRES 8 B 246 TRP ASP LYS PRO PRO LEU ILE ASN ALA ARG VAL GLU THR SEQRES 9 B 246 ALA ALA THR SER ARG MET PHE LYS PRO LEU TRP GLN HIS SEQRES 10 B 246 GLY ARG ALA ILE CYS PHE ALA ASP GLY TRP PHE GLU TRP SEQRES 11 B 246 LYS LYS GLU GLY ASP LYS LYS GLN PRO PHE PHE ILE TYR SEQRES 12 B 246 ARG ALA ASP GLY GLN PRO ILE PHE MET ALA ALA ILE GLY SEQRES 13 B 246 SER THR PRO PHE GLU ARG GLY ASP GLU ALA GLU GLY PHE SEQRES 14 B 246 LEU ILE VAL THR ALA ALA ALA ASP GLN GLY LEU VAL ASP SEQRES 15 B 246 ILE HIS ASP ARG ARG PRO LEU VAL LEU SER PRO GLU ALA SEQRES 16 B 246 ALA ARG GLU TRP MET ARG GLN GLU ILE SER GLY LYS GLU SEQRES 17 B 246 ALA SER GLU ILE ALA ALA SER GLY CYS VAL PRO ALA ASN SEQRES 18 B 246 GLN PHE SER TRP HIS PRO VAL SER ARG ALA VAL GLY ASN SEQRES 19 B 246 VAL LYS ASN GLN GLY ALA GLU LEU ILE GLN PRO VAL SEQRES 1 A 246 MET GLY SER SER HIS LEU HIS HIS HIS HIS SER SER GLY SEQRES 2 A 246 LEU VAL PRO ARG GLY SER GLU ASN LEU TYR PHE GLN CYS SEQRES 3 A 246 GLY ARG PHE ALA GLN SER GLN THR ARG GLU ASP TYR LEU SEQRES 4 A 246 ALA LEU LEU ALA GLU ASP ILE GLU ARG ASP ILE PRO TYR SEQRES 5 A 246 ASP PRO GLU PRO ILE GLY ARG TYR ASN VAL ALA PRO GLY SEQRES 6 A 246 THR LYS VAL LEU LEU LEU SER GLU ARG ASP GLU HIS LEU SEQRES 7 A 246 HIS LEU ASP PRO VAL PHE TRP GLY TYR ALA PRO GLY TRP SEQRES 8 A 246 TRP ASP LYS PRO PRO LEU ILE ASN ALA ARG VAL GLU THR SEQRES 9 A 246 ALA ALA THR SER ARG MET PHE LYS PRO LEU TRP GLN HIS SEQRES 10 A 246 GLY ARG ALA ILE CYS PHE ALA ASP GLY TRP PHE GLU TRP SEQRES 11 A 246 LYS LYS GLU GLY ASP LYS LYS GLN PRO PHE PHE ILE TYR SEQRES 12 A 246 ARG ALA ASP GLY GLN PRO ILE PHE MET ALA ALA ILE GLY SEQRES 13 A 246 SER THR PRO PHE GLU ARG GLY ASP GLU ALA GLU GLY PHE SEQRES 14 A 246 LEU ILE VAL THR ALA ALA ALA ASP GLN GLY LEU VAL ASP SEQRES 15 A 246 ILE HIS ASP ARG ARG PRO LEU VAL LEU SER PRO GLU ALA SEQRES 16 A 246 ALA ARG GLU TRP MET ARG GLN GLU ILE SER GLY LYS GLU SEQRES 17 A 246 ALA SER GLU ILE ALA ALA SER GLY CYS VAL PRO ALA ASN SEQRES 18 A 246 GLN PHE SER TRP HIS PRO VAL SER ARG ALA VAL GLY ASN SEQRES 19 A 246 VAL LYS ASN GLN GLY ALA GLU LEU ILE GLN PRO VAL HET GOL B 301 6 HET GOL A 301 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *271(H2 O) HELIX 1 AA1 THR B 10 ALA B 16 1 7 HELIX 2 AA2 GLU B 20 ARG B 24 5 5 HELIX 3 AA3 THR B 80 SER B 84 5 5 HELIX 4 AA4 PHE B 87 GLY B 94 1 8 HELIX 5 AA5 PRO B 135 GLY B 139 5 5 HELIX 6 AA6 ASP B 153 ILE B 159 5 7 HELIX 7 AA7 SER B 168 ARG B 177 1 10 HELIX 8 AA8 SER B 181 GLY B 192 1 12 HELIX 9 AA9 PRO B 195 ASN B 197 5 3 HELIX 10 AB1 SER B 205 ASN B 210 5 6 HELIX 11 AB2 GLY B 215 GLN B 220 5 6 HELIX 12 AB3 THR A 10 ALA A 16 1 7 HELIX 13 AB4 GLU A 20 ARG A 24 5 5 HELIX 14 AB5 PHE A 87 GLY A 94 1 8 HELIX 15 AB6 PRO A 135 GLY A 139 5 5 HELIX 16 AB7 ASP A 153 ILE A 159 5 7 HELIX 17 AB8 SER A 168 ARG A 177 1 10 HELIX 18 AB9 SER A 181 CYS A 193 1 13 HELIX 19 AC1 PRO A 195 ASN A 197 5 3 HELIX 20 AC2 SER A 205 ASN A 210 5 6 HELIX 21 AC3 GLY A 215 GLN A 220 5 6 SHEET 1 AA1 5 ARG B 35 VAL B 38 0 SHEET 2 AA1 5 PHE B 5 GLN B 7 -1 N PHE B 5 O VAL B 38 SHEET 3 AA1 5 GLY B 102 LYS B 107 -1 O GLY B 102 N ALA B 6 SHEET 4 AA1 5 GLN B 114 ARG B 120 -1 O ILE B 118 N TRP B 103 SHEET 5 AA1 5 PHE B 199 PRO B 203 -1 O SER B 200 N TYR B 119 SHEET 1 AA2 2 LYS B 43 ARG B 50 0 SHEET 2 AA2 2 HIS B 53 PHE B 60 -1 O HIS B 55 N SER B 48 SHEET 1 AA3 4 ASN B 75 ARG B 77 0 SHEET 2 AA3 4 PHE B 145 ALA B 151 1 O THR B 149 N ALA B 76 SHEET 3 AA3 4 ILE B 126 GLY B 132 -1 N ILE B 131 O LEU B 146 SHEET 4 AA3 4 ARG B 162 PRO B 164 0 SHEET 1 AA4 4 ARG B 95 ALA B 100 0 SHEET 2 AA4 4 ILE B 126 GLY B 132 -1 O ALA B 130 N ALA B 96 SHEET 3 AA4 4 PHE B 145 ALA B 151 -1 O LEU B 146 N ILE B 131 SHEET 4 AA4 4 VAL B 166 LEU B 167 0 SHEET 1 AA5 5 ARG A 35 VAL A 38 0 SHEET 2 AA5 5 PHE A 5 GLN A 7 -1 N GLN A 7 O ARG A 35 SHEET 3 AA5 5 GLY A 102 LYS A 107 -1 O GLY A 102 N ALA A 6 SHEET 4 AA5 5 GLN A 114 ARG A 120 -1 O GLN A 114 N LYS A 107 SHEET 5 AA5 5 PHE A 199 PRO A 203 -1 O SER A 200 N TYR A 119 SHEET 1 AA6 2 LYS A 43 ARG A 50 0 SHEET 2 AA6 2 HIS A 53 PHE A 60 -1 O ASP A 57 N LEU A 46 SHEET 1 AA7 4 ASN A 75 ARG A 77 0 SHEET 2 AA7 4 PHE A 145 ALA A 151 1 O THR A 149 N ALA A 76 SHEET 3 AA7 4 ILE A 126 GLY A 132 -1 N ILE A 131 O LEU A 146 SHEET 4 AA7 4 ARG A 162 PRO A 164 0 SHEET 1 AA8 4 ARG A 95 ALA A 100 0 SHEET 2 AA8 4 ILE A 126 GLY A 132 -1 O MET A 128 N CYS A 98 SHEET 3 AA8 4 PHE A 145 ALA A 151 -1 O LEU A 146 N ILE A 131 SHEET 4 AA8 4 VAL A 166 LEU A 167 0 CISPEP 1 THR B 134 PRO B 135 0 -5.71 CISPEP 2 THR A 134 PRO A 135 0 -8.86 SITE 1 AC1 4 PHE B 199 SER B 200 TRP B 201 HOH B 492 SITE 1 AC2 4 PHE A 199 SER A 200 TRP A 201 HOH A 476 CRYST1 46.740 67.327 74.875 90.00 98.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021395 0.000000 0.003327 0.00000 SCALE2 0.000000 0.014853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013516 0.00000