HEADER VIRAL PROTEIN 28-JUN-19 6KCJ TITLE CRYSTAL STRUCTURE OF H5N2 HEMAGGLUTININ APO-Q226L MUTANT FROM TITLE 2 A/CHICKEN/TAIWAN/0502/2012 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/CHICKEN/TAIWAN/0502/2012(H5N2)); SOURCE 4 ORGANISM_TAXID: 1490024; SOURCE 5 STRAIN: A/CHICKEN/TAIWAN/0502/2012(H5N2); SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS INFLUENZA VIRUS, H5N2, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.H.LIN,M.S.LEE,W.G.WU REVDAT 3 22-NOV-23 6KCJ 1 HETSYN REVDAT 2 29-JUL-20 6KCJ 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 30-OCT-19 6KCJ 0 JRNL AUTH T.H.LIN,M.S.LEE,W.G.WU JRNL TITL CRYSTAL STRUCTURE OF H5 HEMAGGLUTININ FROM JRNL TITL 2 A/CHICKEN/TAIWAN/0502/2012 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 25125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1539 - 5.1082 1.00 2992 187 0.1941 0.2360 REMARK 3 2 5.1082 - 4.0585 1.00 2906 149 0.1557 0.1779 REMARK 3 3 4.0585 - 3.5466 1.00 2870 165 0.1778 0.2383 REMARK 3 4 3.5466 - 3.2228 1.00 2884 128 0.2113 0.2971 REMARK 3 5 3.2228 - 2.9921 1.00 2806 183 0.2286 0.3089 REMARK 3 6 2.9921 - 2.8159 1.00 2864 161 0.2563 0.3256 REMARK 3 7 2.8159 - 2.6749 0.99 2801 150 0.2622 0.3532 REMARK 3 8 2.6749 - 2.5586 0.76 2154 115 0.2695 0.3385 REMARK 3 9 2.5586 - 2.4601 0.54 1521 89 0.2790 0.3352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4060 REMARK 3 ANGLE : 1.049 5494 REMARK 3 CHIRALITY : 0.057 586 REMARK 3 PLANARITY : 0.005 715 REMARK 3 DIHEDRAL : 9.733 2424 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 119.7962 -14.8325 60.9848 REMARK 3 T TENSOR REMARK 3 T11: 0.2664 T22: 0.1394 REMARK 3 T33: 0.2337 T12: 0.0315 REMARK 3 T13: -0.0223 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.6260 L22: 0.6094 REMARK 3 L33: 0.5868 L12: -0.0857 REMARK 3 L13: 0.0585 L23: 0.2465 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: -0.1067 S13: -0.0149 REMARK 3 S21: 0.1985 S22: 0.1300 S23: -0.0992 REMARK 3 S31: 0.2626 S32: 0.0547 S33: -0.0321 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KCJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012684. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27258 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.460 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.41500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YKC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.78 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS, 0.2M MGCL, 16%PEG8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.21950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.88099 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 104.71300 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.21950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 31.88099 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 104.71300 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.21950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 31.88099 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 104.71300 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.21950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 31.88099 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 104.71300 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.21950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 31.88099 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.71300 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.21950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 31.88099 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 104.71300 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.76199 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 209.42600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 63.76199 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 209.42600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 63.76199 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 209.42600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 63.76199 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 209.42600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 63.76199 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 209.42600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 63.76199 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 209.42600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 63020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 165.65850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -95.64298 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 165.65850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 95.64298 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -37 REMARK 465 LEU A -36 REMARK 465 LEU A -35 REMARK 465 VAL A -34 REMARK 465 ASN A -33 REMARK 465 GLN A -32 REMARK 465 SER A -31 REMARK 465 HIS A -30 REMARK 465 GLN A -29 REMARK 465 GLY A -28 REMARK 465 PHE A -27 REMARK 465 ASN A -26 REMARK 465 LYS A -25 REMARK 465 GLU A -24 REMARK 465 HIS A -23 REMARK 465 THR A -22 REMARK 465 SER A -21 REMARK 465 LYS A -20 REMARK 465 MET A -19 REMARK 465 VAL A -18 REMARK 465 SER A -17 REMARK 465 ALA A -16 REMARK 465 ILE A -15 REMARK 465 VAL A -14 REMARK 465 LEU A -13 REMARK 465 TYR A -12 REMARK 465 VAL A -11 REMARK 465 LEU A -10 REMARK 465 LEU A -9 REMARK 465 ALA A -8 REMARK 465 ALA A -7 REMARK 465 ALA A -6 REMARK 465 ALA A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 ALA A -2 REMARK 465 PHE A -1 REMARK 465 ALA A 0 REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 PRO A 324 REMARK 465 GLN A 325 REMARK 465 ARG A 326 REMARK 465 GLU A 327 REMARK 465 THR A 328 REMARK 465 ARG A 329 REMARK 465 GLY A 330 REMARK 465 LEU A 331 REMARK 465 PHE A 332 REMARK 465 VAL A 507 REMARK 465 PRO A 508 REMARK 465 ARG A 509 REMARK 465 GLY A 510 REMARK 465 SER A 511 REMARK 465 PRO A 512 REMARK 465 GLY A 513 REMARK 465 SER A 514 REMARK 465 GLY A 515 REMARK 465 TYR A 516 REMARK 465 ILE A 517 REMARK 465 PRO A 518 REMARK 465 GLU A 519 REMARK 465 ALA A 520 REMARK 465 PRO A 521 REMARK 465 ARG A 522 REMARK 465 ASP A 523 REMARK 465 GLY A 524 REMARK 465 GLN A 525 REMARK 465 ALA A 526 REMARK 465 TYR A 527 REMARK 465 VAL A 528 REMARK 465 ARG A 529 REMARK 465 LYS A 530 REMARK 465 ASP A 531 REMARK 465 GLY A 532 REMARK 465 GLU A 533 REMARK 465 TRP A 534 REMARK 465 VAL A 535 REMARK 465 LEU A 536 REMARK 465 LEU A 537 REMARK 465 SER A 538 REMARK 465 THR A 539 REMARK 465 PHE A 540 REMARK 465 LEU A 541 REMARK 465 GLY A 542 REMARK 465 HIS A 543 REMARK 465 HIS A 544 REMARK 465 HIS A 545 REMARK 465 HIS A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 220 O HOH A 701 1.93 REMARK 500 O HOH A 722 O HOH A 806 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 387 OE2 GLU A 426 3765 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 4 71.66 70.47 REMARK 500 THR A 17 138.50 -39.74 REMARK 500 ASN A 26 70.30 44.65 REMARK 500 LYS A 56 -125.20 61.05 REMARK 500 SER A 145 -158.20 -151.65 REMARK 500 PRO A 184 -179.74 -69.75 REMARK 500 GLN A 195 -70.31 58.94 REMARK 500 THR A 205 -169.01 -124.82 REMARK 500 ASN A 276 96.94 -69.67 REMARK 500 SER A 290 23.80 -59.33 REMARK 500 HIS A 298 139.09 -173.99 REMARK 500 PHE A 300 56.60 -103.86 REMARK 500 ASP A 348 52.59 -100.67 REMARK 500 HIS A 355 -70.22 -73.93 REMARK 500 SER A 356 79.43 55.56 REMARK 500 SER A 361 -77.82 -109.33 REMARK 500 TYR A 363 48.48 82.42 REMARK 500 GLN A 454 -78.30 -86.59 REMARK 500 LEU A 455 96.25 -60.11 REMARK 500 ARG A 456 -85.34 -92.29 REMARK 500 ASN A 458 4.47 -63.29 REMARK 500 TYR A 470 20.82 -79.17 REMARK 500 ASP A 474 170.86 75.11 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6KCJ A 3 503 UNP A0A059VBQ9_9INFA DBREF2 6KCJ A A0A059VBQ9 16 516 SEQADV 6KCJ MET A -37 UNP A0A059VBQ INITIATING METHIONINE SEQADV 6KCJ LEU A -36 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LEU A -35 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ VAL A -34 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ASN A -33 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLN A -32 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ SER A -31 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ HIS A -30 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLN A -29 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLY A -28 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ PHE A -27 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ASN A -26 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LYS A -25 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLU A -24 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ HIS A -23 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ THR A -22 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ SER A -21 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LYS A -20 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ MET A -19 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ VAL A -18 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ SER A -17 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A -16 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ILE A -15 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ VAL A -14 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LEU A -13 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ TYR A -12 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ VAL A -11 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LEU A -10 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LEU A -9 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A -8 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A -7 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A -6 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A -5 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ HIS A -4 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ SER A -3 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A -2 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ PHE A -1 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A 0 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ SER A 1 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A 2 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LEU A 225 UNP A0A059VBQ GLN 238 CONFLICT SEQADV 6KCJ GLU A 327 UNP A0A059VBQ ARG 340 CONFLICT SEQADV 6KCJ THR A 328 UNP A0A059VBQ LYS 341 CONFLICT SEQADV 6KCJ SER A 504 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLY A 505 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LEU A 506 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ VAL A 507 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ PRO A 508 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ARG A 509 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLY A 510 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ SER A 511 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ PRO A 512 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLY A 513 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ SER A 514 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLY A 515 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ TYR A 516 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ILE A 517 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ PRO A 518 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLU A 519 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A 520 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ PRO A 521 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ARG A 522 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ASP A 523 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLY A 524 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLN A 525 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ALA A 526 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ TYR A 527 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ VAL A 528 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ARG A 529 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LYS A 530 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ ASP A 531 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLY A 532 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLU A 533 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ TRP A 534 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ VAL A 535 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LEU A 536 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LEU A 537 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ SER A 538 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ THR A 539 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ PHE A 540 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ LEU A 541 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ GLY A 542 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ HIS A 543 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ HIS A 544 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ HIS A 545 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ HIS A 546 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ HIS A 547 UNP A0A059VBQ EXPRESSION TAG SEQADV 6KCJ HIS A 548 UNP A0A059VBQ EXPRESSION TAG SEQRES 1 A 586 MET LEU LEU VAL ASN GLN SER HIS GLN GLY PHE ASN LYS SEQRES 2 A 586 GLU HIS THR SER LYS MET VAL SER ALA ILE VAL LEU TYR SEQRES 3 A 586 VAL LEU LEU ALA ALA ALA ALA HIS SER ALA PHE ALA SER SEQRES 4 A 586 ALA GLY ASP ARG ILE CYS ILE GLY TYR HIS ALA ASN ASN SEQRES 5 A 586 SER THR THR GLN VAL ASP THR ILE MET GLU LYS ASN VAL SEQRES 6 A 586 THR VAL THR HIS ALA GLN ASP ILE LEU GLU LYS GLU HIS SEQRES 7 A 586 ASN GLY ARG LEU CYS SER LEU LYS GLY VAL LYS PRO LEU SEQRES 8 A 586 ILE LEU LYS ASN CYS SER VAL ALA GLY TRP LEU LEU GLY SEQRES 9 A 586 ASN PRO MET CYS ASP GLU PHE LEU ASN ALA PRO GLU TRP SEQRES 10 A 586 SER TYR ILE VAL GLU LYS ASP ARG PRO SER ASN GLY LEU SEQRES 11 A 586 CYS TYR PRO GLY THR PHE ASN TYR TYR GLU GLU LEU LYS SEQRES 12 A 586 HIS LEU MET SER SER THR ASN GLN PHE GLU LYS ILE GLN SEQRES 13 A 586 ILE PHE PRO ARG SER SER TRP SER ASN HIS ASP ALA SER SEQRES 14 A 586 SER GLY VAL SER SER ALA CYS PRO TYR ASN GLY ARG SER SEQRES 15 A 586 SER PHE PHE ARG ASN VAL VAL TRP LEU ILE LYS LYS ASN SEQRES 16 A 586 ASN VAL TYR ARG THR ILE THR ARG THR TYR ASN ASN THR SEQRES 17 A 586 ASN ILE GLU ASP LEU LEU ILE ILE TRP GLY ILE HIS HIS SEQRES 18 A 586 PRO ASN ASN ALA ALA GLU GLN ILE LYS LEU TYR GLN ASN SEQRES 19 A 586 PRO SER THR TYR VAL SER VAL GLY THR SER THR LEU ASN SEQRES 20 A 586 GLN ARG SER ILE PRO GLU ILE ALA THR ARG PRO LYS VAL SEQRES 21 A 586 ASN GLY LEU SER GLY ARG MET GLU PHE PHE TRP THR ILE SEQRES 22 A 586 LEU ARG PRO ASN ASP SER ILE THR PHE GLU SER THR GLY SEQRES 23 A 586 ASN PHE ILE ALA PRO GLU TYR ALA TYR LYS ILE VAL LYS SEQRES 24 A 586 LYS GLY ASP SER ALA ILE MET LYS SER GLU LEU SER TYR SEQRES 25 A 586 SER ASN CYS ASP THR LYS CYS GLN THR PRO VAL GLY ALA SEQRES 26 A 586 ILE ASN SER SER MET PRO PHE HIS ASN VAL HIS PRO PHE SEQRES 27 A 586 ALA ILE GLY GLU CYS PRO LYS TYR VAL LYS LEU LYS LYS SEQRES 28 A 586 LEU VAL LEU ALA THR GLY LEU ARG ASN ILE PRO GLN ARG SEQRES 29 A 586 GLU THR ARG GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE SEQRES 30 A 586 GLU GLY GLY TRP GLN GLY MET VAL ASP GLY TRP TYR GLY SEQRES 31 A 586 TYR HIS HIS SER ASN GLU GLN GLY SER GLY TYR ALA ALA SEQRES 32 A 586 ASP LYS GLU SER THR GLN LYS ALA VAL ASP GLY ILE THR SEQRES 33 A 586 ASN LYS VAL ASN SER ILE ILE SER LYS MET ASN SER GLN SEQRES 34 A 586 PHE GLU ALA VAL GLY LYS GLU PHE ASN ASN LEU GLU ARG SEQRES 35 A 586 ARG ILE GLU ASN LEU ASN LYS LYS MET GLU ASP GLY PHE SEQRES 36 A 586 ILE ASP VAL TRP THR TYR ASN ALA GLU LEU LEU VAL LEU SEQRES 37 A 586 MET GLU ASN GLU ARG THR LEU ASP LEU HIS ASP SER ASN SEQRES 38 A 586 VAL LYS ASN LEU TYR ASP LYS VAL ARG ARG GLN LEU ARG SEQRES 39 A 586 ASP ASN ALA LYS GLU LEU GLY ASN GLY CYS PHE GLU PHE SEQRES 40 A 586 TYR HIS ARG CYS ASP ASN LYS CYS MET GLU SER VAL ARG SEQRES 41 A 586 ASN GLY THR TYR ASP TYR PRO GLN TYR SER GLU GLU SER SEQRES 42 A 586 ARG LEU LYS ARG GLU GLU ILE ASP SER GLY LEU VAL PRO SEQRES 43 A 586 ARG GLY SER PRO GLY SER GLY TYR ILE PRO GLU ALA PRO SEQRES 44 A 586 ARG ASP GLY GLN ALA TYR VAL ARG LYS ASP GLY GLU TRP SEQRES 45 A 586 VAL LEU LEU SER THR PHE LEU GLY HIS HIS HIS HIS HIS SEQRES 46 A 586 HIS HET NAG A 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 FORMUL 3 HOH *113(H2 O) HELIX 1 AA1 SER A 59 GLY A 66 1 8 HELIX 2 AA2 TYR A 100 SER A 109 1 10 HELIX 3 AA3 PRO A 121 TRP A 125 5 5 HELIX 4 AA4 ASN A 186 GLN A 195 1 10 HELIX 5 AA5 GLY A 337 GLY A 341 5 5 HELIX 6 AA6 ASP A 366 LYS A 387 1 22 HELIX 7 AA7 GLU A 403 LEU A 455 1 53 HELIX 8 AA8 TYR A 488 SER A 504 1 17 SHEET 1 AA1 4 TYR A 351 HIS A 354 0 SHEET 2 AA1 4 ARG A 5 TYR A 10 -1 N GLY A 9 O GLY A 352 SHEET 3 AA1 4 CYS A 466 PHE A 469 -1 O PHE A 467 N ILE A 6 SHEET 4 AA1 4 ALA A 459 GLU A 461 -1 N LYS A 460 O GLU A 468 SHEET 1 AA2 2 GLN A 18 VAL A 19 0 SHEET 2 AA2 2 VAL A 27 THR A 28 -1 O VAL A 27 N VAL A 19 SHEET 1 AA3 2 ALA A 32 ASP A 34 0 SHEET 2 AA3 2 VAL A 315 ALA A 317 -1 O LEU A 316 N GLN A 33 SHEET 1 AA4 3 LEU A 36 GLU A 37 0 SHEET 2 AA4 3 PHE A 294 HIS A 295 1 O PHE A 294 N GLU A 37 SHEET 3 AA4 3 LYS A 307 TYR A 308 1 O LYS A 307 N HIS A 295 SHEET 1 AA5 2 LEU A 44 LEU A 47 0 SHEET 2 AA5 2 TYR A 274 THR A 279 1 O CYS A 277 N SER A 46 SHEET 1 AA6 3 LEU A 53 ILE A 54 0 SHEET 2 AA6 3 ILE A 82 GLU A 84 1 O VAL A 83 N LEU A 53 SHEET 3 AA6 3 ILE A 267 LYS A 269 1 O MET A 268 N ILE A 82 SHEET 1 AA7 5 GLY A 96 PHE A 98 0 SHEET 2 AA7 5 ARG A 228 LEU A 236 1 O PHE A 231 N THR A 97 SHEET 3 AA7 5 LEU A 175 HIS A 183 -1 N HIS A 183 O ARG A 228 SHEET 4 AA7 5 TYR A 255 LYS A 262 -1 O TYR A 257 N LEU A 176 SHEET 5 AA7 5 THR A 111 GLN A 118 -1 N ASN A 112 O LYS A 261 SHEET 1 AA8 5 GLY A 96 PHE A 98 0 SHEET 2 AA8 5 ARG A 228 LEU A 236 1 O PHE A 231 N THR A 97 SHEET 3 AA8 5 LEU A 175 HIS A 183 -1 N HIS A 183 O ARG A 228 SHEET 4 AA8 5 PHE A 250 PRO A 253 -1 O ILE A 251 N GLY A 180 SHEET 5 AA8 5 VAL A 150 TRP A 152 -1 N VAL A 151 O ALA A 252 SHEET 1 AA9 2 SER A 135 TYR A 140 0 SHEET 2 AA9 2 ARG A 143 SER A 145 -1 O SER A 145 N SER A 135 SHEET 1 AB1 4 ILE A 163 ASN A 168 0 SHEET 2 AB1 4 SER A 241 SER A 246 -1 O PHE A 244 N ARG A 165 SHEET 3 AB1 4 VAL A 201 GLY A 204 -1 N SER A 202 O GLU A 245 SHEET 4 AB1 4 ASN A 209 SER A 212 -1 O SER A 212 N VAL A 201 SHEET 1 AB2 3 GLY A 286 ILE A 288 0 SHEET 2 AB2 3 CYS A 281 THR A 283 -1 N CYS A 281 O ILE A 288 SHEET 3 AB2 3 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SSBOND 1 CYS A 7 CYS A 466 1555 1555 2.04 SSBOND 2 CYS A 45 CYS A 277 1555 1555 2.05 SSBOND 3 CYS A 58 CYS A 70 1555 1555 2.06 SSBOND 4 CYS A 281 CYS A 305 1555 1555 2.08 LINK ND2 ASN A 57 C1 NAG A 601 1555 1555 1.44 CRYST1 110.439 110.439 314.139 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009055 0.005228 0.000000 0.00000 SCALE2 0.000000 0.010456 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003183 0.00000