HEADER HYDROLASE 29-JUN-19 6KCX TITLE CRYSTAL STRUCTURE OF CITRATE COMPLEX OF ALPHA-GLUCURONIDASE (TM0752) TITLE 2 FROM THERMOTOGA MARITIMA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-GLUCOSIDASE, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / SOURCE 3 DSM 3109 / JCM 10099); SOURCE 4 ORGANISM_TAXID: 243274; SOURCE 5 STRAIN: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099; SOURCE 6 GENE: TM_0752; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMH KEYWDS HYDROLASE, GLYCOSYL HYDROLASE, CARBOHYDRATE METABOLISM, ALPHA- KEYWDS 2 GLUCURONIDASE, CITRATE COMPLEX, NAD(P) BINDING ROSSMAN FOLD DOMAIN- KEYWDS 3 LIKE, LDH C-TERMINAL DOMAIN-LIKE, COBALT BOUND EXPDTA X-RAY DIFFRACTION AUTHOR N.MANOJ,B.S.MOHAPATRA REVDAT 2 22-NOV-23 6KCX 1 LINK REVDAT 1 29-APR-20 6KCX 0 JRNL AUTH S.B.MOHAPATRA,N.MANOJ JRNL TITL STRUCTURE OF AN ALPHA-GLUCURONIDASE IN COMPLEX WITH CO2+AND JRNL TITL 2 CITRATE PROVIDES INSIGHTS INTO THE MECHANISM AND SUBSTRATE JRNL TITL 3 RECOGNITION IN THE FAMILY 4 GLYCOSYL HYDROLASES. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 518 197 2019 JRNL REFN ESSN 1090-2104 JRNL PMID 31409483 JRNL DOI 10.1016/J.BBRC.2019.08.030 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1-2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 38312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2137 - 4.6564 1.00 2667 143 0.1433 0.1604 REMARK 3 2 4.6564 - 3.6968 1.00 2622 144 0.1136 0.1610 REMARK 3 3 3.6968 - 3.2297 1.00 2597 160 0.1493 0.1750 REMARK 3 4 3.2297 - 2.9345 1.00 2631 139 0.1616 0.2103 REMARK 3 5 2.9345 - 2.7242 1.00 2587 129 0.1571 0.2180 REMARK 3 6 2.7242 - 2.5636 1.00 2635 137 0.1438 0.2030 REMARK 3 7 2.5636 - 2.4353 1.00 2608 136 0.1377 0.1858 REMARK 3 8 2.4353 - 2.3293 1.00 2601 131 0.1342 0.1746 REMARK 3 9 2.3293 - 2.2396 1.00 2600 133 0.1246 0.1708 REMARK 3 10 2.2396 - 2.1623 1.00 2584 155 0.1295 0.2005 REMARK 3 11 2.1623 - 2.0947 1.00 2584 139 0.1356 0.1570 REMARK 3 12 2.0947 - 2.0348 1.00 2604 114 0.1450 0.1933 REMARK 3 13 2.0348 - 1.9813 1.00 2629 127 0.1527 0.1930 REMARK 3 14 1.9813 - 1.9329 0.94 2447 129 0.1758 0.2619 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3967 REMARK 3 ANGLE : 0.734 5392 REMARK 3 CHIRALITY : 0.046 566 REMARK 3 PLANARITY : 0.005 704 REMARK 3 DIHEDRAL : 12.622 2361 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9569 5.7797 89.6546 REMARK 3 T TENSOR REMARK 3 T11: 0.2511 T22: 0.2338 REMARK 3 T33: 0.1171 T12: 0.0267 REMARK 3 T13: -0.0023 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.1554 L22: 0.9138 REMARK 3 L33: 1.2834 L12: -0.0436 REMARK 3 L13: 0.2628 L23: 0.0250 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.2567 S13: 0.0160 REMARK 3 S21: -0.3052 S22: -0.0089 S23: 0.0607 REMARK 3 S31: -0.1320 S32: -0.0985 S33: 0.0007 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8328 -8.0888 108.7422 REMARK 3 T TENSOR REMARK 3 T11: 0.1531 T22: 0.1545 REMARK 3 T33: 0.1650 T12: 0.0263 REMARK 3 T13: 0.0207 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 0.2413 L22: 0.5887 REMARK 3 L33: 0.8767 L12: 0.1068 REMARK 3 L13: 0.1967 L23: -0.3775 REMARK 3 S TENSOR REMARK 3 S11: 0.0519 S12: 0.1075 S13: -0.0837 REMARK 3 S21: -0.1627 S22: -0.0582 S23: -0.0593 REMARK 3 S31: 0.0473 S32: 0.0726 S33: 0.0237 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5311 6.5047 109.7560 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.0975 REMARK 3 T33: 0.1141 T12: 0.0003 REMARK 3 T13: -0.0113 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.2467 L22: 0.6863 REMARK 3 L33: 1.1096 L12: -0.2465 REMARK 3 L13: -0.5230 L23: -0.1437 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.0931 S13: -0.0062 REMARK 3 S21: -0.1481 S22: 0.0017 S23: 0.0384 REMARK 3 S31: -0.0718 S32: -0.0319 S33: -0.0563 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4213 -4.6749 120.1518 REMARK 3 T TENSOR REMARK 3 T11: 0.0895 T22: 0.1423 REMARK 3 T33: 0.1653 T12: -0.0047 REMARK 3 T13: -0.0121 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.5847 L22: 1.1532 REMARK 3 L33: 0.6900 L12: -0.0484 REMARK 3 L13: 0.1322 L23: 0.1368 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.0141 S13: -0.0927 REMARK 3 S21: -0.0470 S22: 0.0319 S23: 0.2635 REMARK 3 S31: 0.0051 S32: -0.1587 S33: -0.0213 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1721 -13.4879 93.1467 REMARK 3 T TENSOR REMARK 3 T11: 0.2899 T22: 0.2339 REMARK 3 T33: 0.2100 T12: -0.0239 REMARK 3 T13: -0.0373 T23: -0.0749 REMARK 3 L TENSOR REMARK 3 L11: 0.1422 L22: 0.5203 REMARK 3 L33: 3.2371 L12: -0.0843 REMARK 3 L13: -0.1194 L23: -1.1441 REMARK 3 S TENSOR REMARK 3 S11: -0.1908 S12: 0.1609 S13: -0.1148 REMARK 3 S21: -0.3435 S22: -0.0516 S23: -0.0516 REMARK 3 S31: 0.2727 S32: -0.2641 S33: 0.1526 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 323 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.8152 9.8430 109.4194 REMARK 3 T TENSOR REMARK 3 T11: 0.1435 T22: 0.1484 REMARK 3 T33: 0.1382 T12: 0.0417 REMARK 3 T13: -0.0117 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.2621 L22: 0.4045 REMARK 3 L33: 1.2224 L12: -0.0290 REMARK 3 L13: -0.1961 L23: -0.1267 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0691 S13: 0.0218 REMARK 3 S21: -0.1057 S22: -0.0198 S23: 0.0765 REMARK 3 S31: -0.1496 S32: -0.2394 S33: -0.0034 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1299 -8.7065 119.5097 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.1349 REMARK 3 T33: 0.1351 T12: 0.0239 REMARK 3 T13: 0.0054 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.2765 L22: 0.7601 REMARK 3 L33: 0.7650 L12: 0.1509 REMARK 3 L13: 0.0560 L23: -0.1210 REMARK 3 S TENSOR REMARK 3 S11: 0.0303 S12: 0.0611 S13: -0.0591 REMARK 3 S21: -0.0748 S22: -0.0446 S23: -0.1078 REMARK 3 S31: 0.0752 S32: 0.1029 S33: 0.0081 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KCX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012744. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8-6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.26 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 43.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 1VJT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12 % PEG 3350, 0.2 M TRILITHIUM REMARK 280 CITRATE, 0.1 M IMIDAZOLE, PH 5.8, 2-PROPANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 37.21000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 37.21000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 18.42040 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 261.21479 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 LYS A 470 REMARK 465 LEU A 471 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 ARG A 170 CD NE CZ NH1 NH2 REMARK 470 GLU A 222 CG CD OE1 OE2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 242 CD CE NZ REMARK 470 LYS A 258 CG CD CE NZ REMARK 470 GLU A 281 CG CD OE1 OE2 REMARK 470 LYS A 289 CE NZ REMARK 470 ARG A 308 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 318 CG CD OE1 OE2 REMARK 470 LYS A 327 CG CD CE NZ REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 LYS A 357 CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 LYS A 442 CG CD CE NZ REMARK 470 ARG A 465 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 468 CG CD CE NZ REMARK 470 GLU A 469 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 121 53.53 -162.43 REMARK 500 LEU A 130 -56.00 72.12 REMARK 500 ALA A 150 66.47 -152.22 REMARK 500 ASP A 294 60.66 -101.44 REMARK 500 TYR A 408 -63.52 -125.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 501 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 210 NE2 REMARK 620 2 CIT A 504 O6 83.7 REMARK 620 3 HOH A 625 O 94.8 76.4 REMARK 620 4 HOH A 769 O 90.9 95.5 169.5 REMARK 620 5 HOH A 772 O 161.9 79.4 87.7 84.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 505 DBREF 6KCX A 1 471 UNP Q9WZL1 Q9WZL1_THEMA 1 471 SEQADV 6KCX MET A -11 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX GLY A -10 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX SER A -9 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX ASP A -8 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX LYS A -7 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX ILE A -6 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX HIS A -5 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX HIS A -4 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX HIS A -3 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX HIS A -2 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX HIS A -1 UNP Q9WZL1 EXPRESSION TAG SEQADV 6KCX HIS A 0 UNP Q9WZL1 EXPRESSION TAG SEQRES 1 A 483 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 483 LYS ILE SER ILE ILE GLY ALA GLY SER VAL ARG PHE ALA SEQRES 3 A 483 LEU GLN LEU VAL GLY ASP ILE ALA GLN THR GLU GLU LEU SEQRES 4 A 483 SER ARG GLU ASP THR HIS ILE TYR MET MET ASP VAL HIS SEQRES 5 A 483 GLU ARG ARG LEU ASN ALA SER TYR ILE LEU ALA ARG LYS SEQRES 6 A 483 TYR VAL GLU GLU LEU ASN SER PRO VAL LYS ILE VAL LYS SEQRES 7 A 483 THR SER SER LEU ASP GLU ALA ILE ASP GLY ALA ASP PHE SEQRES 8 A 483 ILE ILE ASN THR ALA TYR PRO TYR ASP PRO ARG TYR HIS SEQRES 9 A 483 ASP SER GLY SER GLN ARG TRP ASP GLU VAL THR LYS VAL SEQRES 10 A 483 GLY GLU LYS HIS GLY TYR TYR ARG GLY ILE ASP SER GLN SEQRES 11 A 483 GLU LEU ASN MET VAL SER THR TYR THR TYR VAL LEU SER SEQRES 12 A 483 SER TYR PRO ASP MET LYS LEU ALA LEU GLU ILE ALA GLU SEQRES 13 A 483 LYS MET LYS LYS MET ALA PRO LYS ALA TYR LEU MET GLN SEQRES 14 A 483 THR ALA ASN PRO VAL PHE GLU ILE THR GLN ALA VAL ARG SEQRES 15 A 483 ARG TRP THR GLY ALA ASN ILE VAL GLY PHE CYS HIS GLY SEQRES 16 A 483 VAL ALA GLY VAL TYR GLU VAL PHE GLU LYS LEU ASP LEU SEQRES 17 A 483 ASP PRO GLU GLU VAL ASP TRP GLN VAL ALA GLY VAL ASN SEQRES 18 A 483 HIS GLY ILE TRP LEU ASN ARG PHE ARG TYR ARG GLY GLU SEQRES 19 A 483 ASP ALA TYR PRO LEU LEU ASP GLU TRP ILE GLU LYS LYS SEQRES 20 A 483 LEU PRO GLU TRP GLU PRO LYS ASN PRO TRP ASP THR GLN SEQRES 21 A 483 MET SER PRO ALA ALA MET ASP MET TYR LYS PHE TYR GLY SEQRES 22 A 483 MET LEU PRO ILE GLY ASP THR VAL ARG ASN GLY SER TRP SEQRES 23 A 483 LYS TYR HIS TYR ASN LEU GLU THR LYS LYS LYS TRP PHE SEQRES 24 A 483 GLY LYS PHE GLY GLY ILE ASP ASN GLU VAL GLU ARG PRO SEQRES 25 A 483 LYS PHE HIS GLU GLN LEU ARG ARG ALA ARG GLU ARG LEU SEQRES 26 A 483 ILE LYS LEU ALA GLU GLU VAL GLN GLN ASN PRO GLY MET SEQRES 27 A 483 LYS LEU THR GLU GLU HIS PRO GLU ILE PHE PRO LYS GLY SEQRES 28 A 483 LYS LEU SER GLY GLU GLN HIS ILE PRO PHE ILE ASN ALA SEQRES 29 A 483 ILE ALA ASN ASN LYS ARG VAL ARG LEU PHE LEU ASN VAL SEQRES 30 A 483 GLU ASN GLN GLY THR LEU LYS ASP PHE PRO ASP ASP VAL SEQRES 31 A 483 VAL MET GLU LEU PRO VAL TRP VAL ASP CYS CYS GLY ILE SEQRES 32 A 483 HIS ARG GLU LYS VAL GLU PRO ASP LEU THR HIS ARG ILE SEQRES 33 A 483 LYS ILE PHE TYR LEU TRP PRO ARG ILE LEU ARG MET GLU SEQRES 34 A 483 TRP ASN LEU GLU ALA TYR ILE SER ARG ASP ARG LYS VAL SEQRES 35 A 483 LEU GLU GLU ILE LEU ILE ARG ASP PRO ARG THR LYS SER SEQRES 36 A 483 TYR GLU GLN ILE VAL GLN VAL LEU ASP GLU ILE PHE ASN SEQRES 37 A 483 LEU PRO PHE ASN GLU GLU LEU ARG ARG TYR TYR LYS GLU SEQRES 38 A 483 LYS LEU HET CO A 501 1 HET IMD A 502 10 HET IPA A 503 12 HET CIT A 504 18 HET CIT A 505 18 HETNAM CO COBALT (II) ION HETNAM IMD IMIDAZOLE HETNAM IPA ISOPROPYL ALCOHOL HETNAM CIT CITRIC ACID HETSYN IPA 2-PROPANOL FORMUL 2 CO CO 2+ FORMUL 3 IMD C3 H5 N2 1+ FORMUL 4 IPA C3 H8 O FORMUL 5 CIT 2(C6 H8 O7) FORMUL 7 HOH *381(H2 O) HELIX 1 AA1 SER A 10 GLN A 23 1 14 HELIX 2 AA2 HIS A 40 LEU A 58 1 19 HELIX 3 AA3 SER A 69 ASP A 75 1 7 HELIX 4 AA4 SER A 94 HIS A 109 1 16 HELIX 5 AA5 SER A 132 ALA A 150 1 19 HELIX 6 AA6 PRO A 161 GLY A 174 1 14 HELIX 7 AA7 HIS A 182 ALA A 185 5 4 HELIX 8 AA8 GLY A 186 LEU A 194 1 9 HELIX 9 AA9 ASP A 197 GLU A 199 5 3 HELIX 10 AB1 ALA A 224 LYS A 235 1 12 HELIX 11 AB2 LEU A 236 TRP A 239 5 4 HELIX 12 AB3 SER A 250 GLY A 261 1 12 HELIX 13 AB4 GLY A 266 ARG A 270 5 5 HELIX 14 AB5 SER A 273 HIS A 277 5 5 HELIX 15 AB6 ASN A 279 GLY A 288 1 10 HELIX 16 AB7 VAL A 297 ASN A 323 1 27 HELIX 17 AB8 LYS A 327 HIS A 332 1 6 HELIX 18 AB9 GLN A 345 ASN A 356 1 12 HELIX 19 AC1 THR A 401 TYR A 408 1 8 HELIX 20 AC2 TYR A 408 ARG A 426 1 19 HELIX 21 AC3 ASP A 427 ARG A 437 1 11 HELIX 22 AC4 SER A 443 ASN A 456 1 14 HELIX 23 AC5 LEU A 457 PHE A 459 5 3 HELIX 24 AC6 ASN A 460 TYR A 467 1 8 SHEET 1 AA1 9 LYS A 63 THR A 67 0 SHEET 2 AA1 9 THR A 32 MET A 37 1 N ILE A 34 O LYS A 63 SHEET 3 AA1 9 MET A 1 ILE A 6 1 N MET A 1 O HIS A 33 SHEET 4 AA1 9 PHE A 79 ASN A 82 1 O ILE A 81 N SER A 4 SHEET 5 AA1 9 TYR A 154 GLN A 157 1 O MET A 156 N ILE A 80 SHEET 6 AA1 9 ILE A 177 PHE A 180 1 O PHE A 180 N GLN A 157 SHEET 7 AA1 9 VAL A 359 GLU A 366 -1 O ASN A 364 N GLY A 179 SHEET 8 AA1 9 VAL A 379 ASP A 387 -1 O MET A 380 N VAL A 365 SHEET 9 AA1 9 GLY A 390 ARG A 393 -1 O HIS A 392 N TRP A 385 SHEET 1 AA2 3 VAL A 201 VAL A 208 0 SHEET 2 AA2 3 GLY A 211 TYR A 219 -1 O GLY A 211 N VAL A 208 SHEET 3 AA2 3 GLU A 222 ASP A 223 -1 O GLU A 222 N TYR A 219 SHEET 1 AA3 3 VAL A 201 VAL A 208 0 SHEET 2 AA3 3 GLY A 211 TYR A 219 -1 O GLY A 211 N VAL A 208 SHEET 3 AA3 3 PRO A 264 ILE A 265 -1 O ILE A 265 N ILE A 212 LINK NE2 HIS A 210 CO CO A 501 1555 1555 2.21 LINK CO CO A 501 O6 CIT A 504 1555 1555 2.35 LINK CO CO A 501 O HOH A 625 1555 1555 2.36 LINK CO CO A 501 O HOH A 769 1555 1555 2.28 LINK CO CO A 501 O HOH A 772 1555 1555 2.20 CISPEP 1 ASN A 160 PRO A 161 0 1.33 CISPEP 2 GLU A 397 PRO A 398 0 -6.41 CISPEP 3 GLU A 397 PRO A 398 0 -6.08 SITE 1 AC1 6 CYS A 181 HIS A 210 CIT A 504 HOH A 625 SITE 2 AC1 6 HOH A 769 HOH A 772 SITE 1 AC2 3 MET A 37 LEU A 138 HOH A 645 SITE 1 AC3 5 TRP A 274 TYR A 278 PRO A 439 ARG A 440 SITE 2 AC3 5 HOH A 797 SITE 1 AC4 13 SER A 124 THR A 125 ASN A 160 HIS A 210 SITE 2 AC4 13 TRP A 245 ARG A 270 ARG A 299 CO A 501 SITE 3 AC4 13 HOH A 625 HOH A 631 HOH A 748 HOH A 772 SITE 4 AC4 13 HOH A 888 SITE 1 AC5 12 SER A 10 ARG A 43 TYR A 85 SER A 94 SITE 2 AC5 12 SER A 96 LEU A 306 ARG A 310 HOH A 628 SITE 3 AC5 12 HOH A 683 HOH A 717 HOH A 758 HOH A 792 CRYST1 74.420 80.410 89.050 90.00 102.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013437 0.000000 0.002881 0.00000 SCALE2 0.000000 0.012436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011485 0.00000