HEADER TRANSFERASE 02-JUL-19 6KDP TITLE CRYSTAL STRUCTURE OF HUMAN DNMT3B-DNMT3L COMPLEX (II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE 3B; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: DNMT3B,DNA METHYLTRANSFERASE HSAIIIB,M.HSAIIIB; COMPND 5 EC: 2.1.1.37; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE; COMPND 9 CHAIN: B, C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNMT3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: DNMT3L; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNMT3B, DNA METHYLTRANSFERASE, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-C.LIN,Y.-P.CHEN,W.-Z.YANG,C.-K.SHEN,H.S.YUAN REVDAT 4 22-NOV-23 6KDP 1 REMARK REVDAT 3 22-APR-20 6KDP 1 JRNL REVDAT 2 04-MAR-20 6KDP 1 JRNL REVDAT 1 19-FEB-20 6KDP 0 JRNL AUTH C.C.LIN,Y.P.CHEN,W.Z.YANG,J.C.K.SHEN,H.S.YUAN JRNL TITL STRUCTURAL INSIGHTS INTO CPG-SPECIFIC DNA METHYLATION BY JRNL TITL 2 HUMAN DNA METHYLTRANSFERASE 3B. JRNL REF NUCLEIC ACIDS RES. V. 48 3949 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32083663 JRNL DOI 10.1093/NAR/GKAA111 REMARK 2 REMARK 2 RESOLUTION. 2.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 77.5 REMARK 3 NUMBER OF REFLECTIONS : 32942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 6.6855 0.98 3483 198 0.0000 0.2389 REMARK 3 2 6.6855 - 5.3163 1.00 3398 183 0.2074 0.2465 REMARK 3 3 5.3163 - 4.6472 1.00 3370 193 0.1788 0.2339 REMARK 3 4 4.6472 - 4.2236 0.99 3306 190 0.1687 0.2081 REMARK 3 5 4.2236 - 3.9216 0.92 3106 153 0.1950 0.2279 REMARK 3 6 3.9216 - 3.6908 0.82 2732 142 0.2012 0.2386 REMARK 3 7 3.6908 - 3.5063 0.73 2442 129 0.0000 0.2707 REMARK 3 8 3.5063 - 3.3538 0.67 2234 129 0.0000 0.2633 REMARK 3 9 3.3538 - 3.2249 0.61 2037 101 0.0000 0.2517 REMARK 3 10 3.2249 - 3.1137 0.57 1875 112 0.0000 0.3402 REMARK 3 11 3.1137 - 3.0165 0.52 1726 69 0.0000 0.3599 REMARK 3 12 3.0165 - 2.9303 0.47 1555 79 0.2717 0.3232 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 570 THROUGH 725 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9602 28.1930 -22.8502 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.2687 REMARK 3 T33: 0.2730 T12: 0.0176 REMARK 3 T13: -0.0300 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 1.1494 L22: 2.1312 REMARK 3 L33: 1.8467 L12: -0.0042 REMARK 3 L13: 0.5425 L23: -0.5331 REMARK 3 S TENSOR REMARK 3 S11: 0.0335 S12: 0.1019 S13: 0.0503 REMARK 3 S21: 0.0272 S22: -0.0847 S23: -0.1890 REMARK 3 S31: -0.2349 S32: 0.0782 S33: 0.0276 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 726 THROUGH 853 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4503 11.3255 -20.3596 REMARK 3 T TENSOR REMARK 3 T11: 0.2287 T22: 0.3649 REMARK 3 T33: 0.3818 T12: 0.0387 REMARK 3 T13: -0.0245 T23: 0.0413 REMARK 3 L TENSOR REMARK 3 L11: 0.4122 L22: 2.2212 REMARK 3 L33: 0.7453 L12: 0.2719 REMARK 3 L13: 0.0569 L23: 0.1002 REMARK 3 S TENSOR REMARK 3 S11: -0.0311 S12: -0.0395 S13: -0.0925 REMARK 3 S21: -0.0170 S22: -0.0513 S23: -0.4739 REMARK 3 S31: 0.0643 S32: 0.2142 S33: 0.0461 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6658 65.0491 -32.9488 REMARK 3 T TENSOR REMARK 3 T11: 0.9238 T22: 0.4758 REMARK 3 T33: 0.6333 T12: 0.0389 REMARK 3 T13: -0.0635 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 1.2384 L22: 2.3171 REMARK 3 L33: 0.4081 L12: -0.4388 REMARK 3 L13: 0.7884 L23: -0.3454 REMARK 3 S TENSOR REMARK 3 S11: -0.1774 S12: 0.0009 S13: 0.6455 REMARK 3 S21: 0.5823 S22: 0.0921 S23: -0.1026 REMARK 3 S31: -0.8706 S32: -0.2621 S33: 0.1297 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 206 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.0471 57.9760 -30.7337 REMARK 3 T TENSOR REMARK 3 T11: 0.7514 T22: 0.3619 REMARK 3 T33: 0.5098 T12: -0.1569 REMARK 3 T13: -0.1087 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.3753 L22: 0.3481 REMARK 3 L33: 1.4369 L12: -0.4213 REMARK 3 L13: 0.3025 L23: -0.2527 REMARK 3 S TENSOR REMARK 3 S11: -0.3476 S12: 0.0514 S13: 0.5120 REMARK 3 S21: 0.0013 S22: 0.0764 S23: -0.6434 REMARK 3 S31: -1.1122 S32: 0.6781 S33: 0.0037 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 245 THROUGH 255 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8972 46.0231 -47.3711 REMARK 3 T TENSOR REMARK 3 T11: 0.6559 T22: 0.6567 REMARK 3 T33: 0.7145 T12: -0.1266 REMARK 3 T13: 0.1066 T23: 0.0936 REMARK 3 L TENSOR REMARK 3 L11: 0.2397 L22: 2.1700 REMARK 3 L33: 1.0845 L12: -0.7425 REMARK 3 L13: 0.5181 L23: -1.5385 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.3721 S13: 0.2080 REMARK 3 S21: -0.4068 S22: -0.1936 S23: -0.5748 REMARK 3 S31: 0.0674 S32: 0.8219 S33: 0.1722 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0467 45.6336 -32.8537 REMARK 3 T TENSOR REMARK 3 T11: 0.3730 T22: 0.2107 REMARK 3 T33: 0.3037 T12: -0.0498 REMARK 3 T13: -0.0169 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.8134 L22: 1.4871 REMARK 3 L33: 1.6530 L12: 0.0200 REMARK 3 L13: 0.4927 L23: 0.1814 REMARK 3 S TENSOR REMARK 3 S11: -0.0936 S12: -0.1757 S13: -0.0840 REMARK 3 S21: 0.0795 S22: -0.2864 S23: -0.5660 REMARK 3 S31: -0.2255 S32: 0.0340 S33: 0.1151 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 271 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2266 52.0744 -32.6350 REMARK 3 T TENSOR REMARK 3 T11: 0.7025 T22: 0.2559 REMARK 3 T33: 0.2816 T12: 0.0483 REMARK 3 T13: 0.0284 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.9057 L22: 2.2782 REMARK 3 L33: 2.1552 L12: -0.2625 REMARK 3 L13: 0.3566 L23: 0.9631 REMARK 3 S TENSOR REMARK 3 S11: -0.4072 S12: -0.1225 S13: 0.0887 REMARK 3 S21: 0.6027 S22: -0.2295 S23: 0.0359 REMARK 3 S31: -0.2886 S32: 0.0440 S33: 0.1129 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 292 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.1884 44.9817 -44.1241 REMARK 3 T TENSOR REMARK 3 T11: 0.5647 T22: 0.2900 REMARK 3 T33: 0.2725 T12: 0.0007 REMARK 3 T13: -0.0011 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 1.3065 L22: 1.7751 REMARK 3 L33: 4.3167 L12: -0.9147 REMARK 3 L13: 1.8357 L23: -2.0449 REMARK 3 S TENSOR REMARK 3 S11: 0.1699 S12: 0.4040 S13: -0.4604 REMARK 3 S21: 0.0684 S22: 0.1027 S23: 0.4174 REMARK 3 S31: -0.3231 S32: -0.4071 S33: -0.1270 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 316 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.3721 51.7411 -46.9944 REMARK 3 T TENSOR REMARK 3 T11: 0.5984 T22: 0.2790 REMARK 3 T33: 0.3372 T12: 0.0698 REMARK 3 T13: 0.0537 T23: 0.0300 REMARK 3 L TENSOR REMARK 3 L11: 1.4048 L22: 1.1159 REMARK 3 L33: 1.1424 L12: 0.3399 REMARK 3 L13: 0.5527 L23: 0.5825 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: -0.0219 S13: 0.3127 REMARK 3 S21: -0.0796 S22: 0.0850 S23: -0.0100 REMARK 3 S31: -0.2402 S32: -0.0268 S33: -0.0035 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 340 THROUGH 360 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3834 45.9146 -55.3250 REMARK 3 T TENSOR REMARK 3 T11: 0.8794 T22: 0.5445 REMARK 3 T33: 0.3876 T12: -0.0231 REMARK 3 T13: -0.0534 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 3.9804 L22: 4.4212 REMARK 3 L33: 0.4733 L12: 4.0326 REMARK 3 L13: -1.3334 L23: -1.4653 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: 0.2589 S13: -0.1033 REMARK 3 S21: 0.0286 S22: -0.3369 S23: -0.4032 REMARK 3 S31: 0.1504 S32: 0.8744 S33: -0.0444 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 361 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8491 65.9581 -39.0068 REMARK 3 T TENSOR REMARK 3 T11: 1.0856 T22: 0.3873 REMARK 3 T33: 0.3691 T12: 0.1014 REMARK 3 T13: -0.1280 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.1398 L22: 1.2251 REMARK 3 L33: 0.1503 L12: 0.8162 REMARK 3 L13: -0.0593 L23: 0.1933 REMARK 3 S TENSOR REMARK 3 S11: -0.4595 S12: 0.0682 S13: 0.3159 REMARK 3 S21: -0.0973 S22: 0.2582 S23: -0.2605 REMARK 3 S31: -0.5418 S32: -0.5629 S33: 0.0387 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 178 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0322 -61.7244 -37.4913 REMARK 3 T TENSOR REMARK 3 T11: 0.8644 T22: 0.4909 REMARK 3 T33: 0.5870 T12: -0.1385 REMARK 3 T13: 0.1270 T23: -0.0741 REMARK 3 L TENSOR REMARK 3 L11: 1.6358 L22: 3.1906 REMARK 3 L33: 0.7560 L12: -0.6796 REMARK 3 L13: -0.7911 L23: 0.0230 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: -0.2519 S13: -0.7895 REMARK 3 S21: 0.1069 S22: -0.0630 S23: 0.3343 REMARK 3 S31: 1.0347 S32: -0.3125 S33: 0.1295 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 229 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0632 -48.2404 -38.5619 REMARK 3 T TENSOR REMARK 3 T11: 0.4879 T22: 0.3159 REMARK 3 T33: 0.3836 T12: -0.2187 REMARK 3 T13: 0.1792 T23: -0.1423 REMARK 3 L TENSOR REMARK 3 L11: 2.2137 L22: 2.4089 REMARK 3 L33: 1.4619 L12: -0.1396 REMARK 3 L13: -1.0763 L23: 0.5370 REMARK 3 S TENSOR REMARK 3 S11: -0.2791 S12: 0.6097 S13: -0.5228 REMARK 3 S21: 0.2851 S22: -0.4090 S23: 0.7172 REMARK 3 S31: 1.0453 S32: -0.9347 S33: 0.1180 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 271 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2857 -50.8369 -35.3726 REMARK 3 T TENSOR REMARK 3 T11: 0.6003 T22: 0.3421 REMARK 3 T33: 0.2947 T12: 0.0315 REMARK 3 T13: 0.0697 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 1.6696 L22: 2.4416 REMARK 3 L33: 3.3986 L12: -0.0443 REMARK 3 L13: -0.2500 L23: -1.4605 REMARK 3 S TENSOR REMARK 3 S11: -0.2655 S12: -0.2546 S13: -0.1397 REMARK 3 S21: 0.4949 S22: 0.0912 S23: -0.0231 REMARK 3 S31: 0.3012 S32: -0.2338 S33: 0.1749 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 292 THROUGH 315 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.3324 -43.1652 -45.4603 REMARK 3 T TENSOR REMARK 3 T11: 0.3178 T22: 0.2220 REMARK 3 T33: 0.2665 T12: -0.0573 REMARK 3 T13: 0.0398 T23: -0.0439 REMARK 3 L TENSOR REMARK 3 L11: 2.5028 L22: 1.5697 REMARK 3 L33: 3.4621 L12: -1.0730 REMARK 3 L13: -1.9776 L23: 1.0985 REMARK 3 S TENSOR REMARK 3 S11: -0.0529 S12: -0.0290 S13: 0.1026 REMARK 3 S21: -0.2706 S22: 0.2860 S23: -0.3973 REMARK 3 S31: -0.0581 S32: 0.3574 S33: -0.0700 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 316 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7633 -46.5609 -52.0773 REMARK 3 T TENSOR REMARK 3 T11: 0.6285 T22: 0.2641 REMARK 3 T33: 0.2253 T12: 0.0562 REMARK 3 T13: 0.0872 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.0212 L22: 2.0414 REMARK 3 L33: 3.1391 L12: 0.6789 REMARK 3 L13: -1.9110 L23: -0.1001 REMARK 3 S TENSOR REMARK 3 S11: -0.2127 S12: 0.0160 S13: 0.3242 REMARK 3 S21: -0.0933 S22: 0.2925 S23: 0.2971 REMARK 3 S31: -0.0585 S32: -0.2775 S33: -0.0149 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 354 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1107 -61.6205 -44.6938 REMARK 3 T TENSOR REMARK 3 T11: 1.0868 T22: 0.4115 REMARK 3 T33: 0.4247 T12: 0.0113 REMARK 3 T13: 0.2186 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 1.3443 L22: 1.7706 REMARK 3 L33: 1.0878 L12: 0.2882 REMARK 3 L13: -0.6757 L23: -0.5990 REMARK 3 S TENSOR REMARK 3 S11: -0.4424 S12: 0.3548 S13: -0.6405 REMARK 3 S21: 0.0854 S22: 0.0812 S23: 0.3285 REMARK 3 S31: 0.5799 S32: -0.1384 S33: 0.0117 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 570 THROUGH 725 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9813 -27.7646 -25.1581 REMARK 3 T TENSOR REMARK 3 T11: 0.1931 T22: 0.2839 REMARK 3 T33: 0.2781 T12: -0.0131 REMARK 3 T13: 0.0474 T23: -0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.9895 L22: 1.8067 REMARK 3 L33: 2.0207 L12: 0.2492 REMARK 3 L13: -0.4313 L23: 0.5803 REMARK 3 S TENSOR REMARK 3 S11: -0.0833 S12: 0.1371 S13: 0.0392 REMARK 3 S21: 0.1234 S22: 0.0050 S23: 0.1551 REMARK 3 S31: 0.2731 S32: -0.0926 S33: 0.0201 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 726 THROUGH 853 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8444 -10.9232 -23.5882 REMARK 3 T TENSOR REMARK 3 T11: 0.1706 T22: 0.4126 REMARK 3 T33: 0.3943 T12: 0.0451 REMARK 3 T13: 0.0129 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 0.6932 L22: 1.9404 REMARK 3 L33: 0.4951 L12: 0.3068 REMARK 3 L13: -0.0375 L23: 0.7900 REMARK 3 S TENSOR REMARK 3 S11: -0.0916 S12: 0.1359 S13: 0.1163 REMARK 3 S21: -0.1642 S22: -0.0816 S23: 0.3409 REMARK 3 S31: 0.0418 S32: -0.3426 S33: 0.0315 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32961 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.930 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YX2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.7 M SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.47550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 115.47550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.05250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 117.03300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.05250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 117.03300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 115.47550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.05250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 117.03300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.47550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.05250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 117.03300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 568 REMARK 465 HIS A 569 REMARK 465 ASN A 779 REMARK 465 SER A 780 REMARK 465 ILE A 781 REMARK 465 LYS A 782 REMARK 465 GLN A 783 REMARK 465 GLY A 784 REMARK 465 LYS A 785 REMARK 465 GLY B 176 REMARK 465 HIS B 177 REMARK 465 MET B 178 REMARK 465 SER B 213 REMARK 465 ASP B 214 REMARK 465 PRO B 215 REMARK 465 GLN B 351 REMARK 465 SER B 352 REMARK 465 SER B 353 REMARK 465 LYS B 354 REMARK 465 LEU B 355 REMARK 465 ALA B 356 REMARK 465 ALA B 357 REMARK 465 GLY C 176 REMARK 465 HIS C 177 REMARK 465 SER C 213 REMARK 465 ASP C 214 REMARK 465 PRO C 215 REMARK 465 LEU C 355 REMARK 465 ALA C 356 REMARK 465 GLY D 568 REMARK 465 HIS D 569 REMARK 465 ASN D 779 REMARK 465 SER D 780 REMARK 465 ILE D 781 REMARK 465 LYS D 782 REMARK 465 GLN D 783 REMARK 465 GLY D 784 REMARK 465 LYS D 785 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 584 42.10 -100.02 REMARK 500 ASN A 626 -143.13 67.87 REMARK 500 ARG A 731 78.47 -164.17 REMARK 500 PHE B 196 -57.97 69.19 REMARK 500 ASN B 287 53.99 -99.68 REMARK 500 PRO B 360 58.75 -67.02 REMARK 500 THR C 181 134.38 -33.72 REMARK 500 PHE C 196 -58.82 65.92 REMARK 500 ASN C 287 55.60 -99.00 REMARK 500 PRO C 370 5.38 -65.00 REMARK 500 ILE D 584 34.53 -94.66 REMARK 500 ASN D 626 -113.87 -90.05 REMARK 500 ARG D 731 78.42 -167.50 REMARK 500 CYS D 852 -158.75 -117.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH D 902 DBREF 6KDP A 571 853 UNP Q9UBC3 DNM3B_HUMAN 571 853 DBREF 6KDP B 178 379 UNP Q9UJW3 DNM3L_HUMAN 178 379 DBREF 6KDP C 178 379 UNP Q9UJW3 DNM3L_HUMAN 178 379 DBREF 6KDP D 571 853 UNP Q9UBC3 DNM3B_HUMAN 571 853 SEQADV 6KDP GLY A 568 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDP HIS A 569 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDP MET A 570 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDP GLY B 176 UNP Q9UJW3 EXPRESSION TAG SEQADV 6KDP HIS B 177 UNP Q9UJW3 EXPRESSION TAG SEQADV 6KDP GLY C 176 UNP Q9UJW3 EXPRESSION TAG SEQADV 6KDP HIS C 177 UNP Q9UJW3 EXPRESSION TAG SEQADV 6KDP GLY D 568 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDP HIS D 569 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDP MET D 570 UNP Q9UBC3 EXPRESSION TAG SEQRES 1 A 286 GLY HIS MET ARG ARG ARG PRO ILE ARG VAL LEU SER LEU SEQRES 2 A 286 PHE ASP GLY ILE ALA THR GLY TYR LEU VAL LEU LYS GLU SEQRES 3 A 286 LEU GLY ILE LYS VAL GLY LYS TYR VAL ALA SER GLU VAL SEQRES 4 A 286 CYS GLU GLU SER ILE ALA VAL GLY THR VAL LYS HIS GLU SEQRES 5 A 286 GLY ASN ILE LYS TYR VAL ASN ASP VAL ARG ASN ILE THR SEQRES 6 A 286 LYS LYS ASN ILE GLU GLU TRP GLY PRO PHE ASP LEU VAL SEQRES 7 A 286 ILE GLY GLY SER PRO CYS ASN ASP LEU SER ASN VAL ASN SEQRES 8 A 286 PRO ALA ARG LYS GLY LEU TYR GLU GLY THR GLY ARG LEU SEQRES 9 A 286 PHE PHE GLU PHE TYR HIS LEU LEU ASN TYR SER ARG PRO SEQRES 10 A 286 LYS GLU GLY ASP ASP ARG PRO PHE PHE TRP MET PHE GLU SEQRES 11 A 286 ASN VAL VAL ALA MET LYS VAL GLY ASP LYS ARG ASP ILE SEQRES 12 A 286 SER ARG PHE LEU GLU CYS ASN PRO VAL MET ILE ASP ALA SEQRES 13 A 286 ILE LYS VAL SER ALA ALA HIS ARG ALA ARG TYR PHE TRP SEQRES 14 A 286 GLY ASN LEU PRO GLY MET ASN ARG PRO VAL ILE ALA SER SEQRES 15 A 286 LYS ASN ASP LYS LEU GLU LEU GLN ASP CYS LEU GLU TYR SEQRES 16 A 286 ASN ARG ILE ALA LYS LEU LYS LYS VAL GLN THR ILE THR SEQRES 17 A 286 THR LYS SER ASN SER ILE LYS GLN GLY LYS ASN GLN LEU SEQRES 18 A 286 PHE PRO VAL VAL MET ASN GLY LYS GLU ASP VAL LEU TRP SEQRES 19 A 286 CYS THR GLU LEU GLU ARG ILE PHE GLY PHE PRO VAL HIS SEQRES 20 A 286 TYR THR ASP VAL SER ASN MET GLY ARG GLY ALA ARG GLN SEQRES 21 A 286 LYS LEU LEU GLY ARG SER TRP SER VAL PRO VAL ILE ARG SEQRES 22 A 286 HIS LEU PHE ALA PRO LEU LYS ASP TYR PHE ALA CYS GLU SEQRES 1 B 204 GLY HIS MET PHE GLU THR VAL PRO VAL TRP ARG ARG GLN SEQRES 2 B 204 PRO VAL ARG VAL LEU SER LEU PHE GLU ASP ILE LYS LYS SEQRES 3 B 204 GLU LEU THR SER LEU GLY PHE LEU GLU SER GLY SER ASP SEQRES 4 B 204 PRO GLY GLN LEU LYS HIS VAL VAL ASP VAL THR ASP THR SEQRES 5 B 204 VAL ARG LYS ASP VAL GLU GLU TRP GLY PRO PHE ASP LEU SEQRES 6 B 204 VAL TYR GLY ALA THR PRO PRO LEU GLY HIS THR CYS ASP SEQRES 7 B 204 ARG PRO PRO SER TRP TYR LEU PHE GLN PHE HIS ARG LEU SEQRES 8 B 204 LEU GLN TYR ALA ARG PRO LYS PRO GLY SER PRO ARG PRO SEQRES 9 B 204 PHE PHE TRP MET PHE VAL ASP ASN LEU VAL LEU ASN LYS SEQRES 10 B 204 GLU ASP LEU ASP VAL ALA SER ARG PHE LEU GLU MET GLU SEQRES 11 B 204 PRO VAL THR ILE PRO ASP VAL HIS GLY GLY SER LEU GLN SEQRES 12 B 204 ASN ALA VAL ARG VAL TRP SER ASN ILE PRO ALA ILE ARG SEQRES 13 B 204 SER ARG HIS TRP ALA LEU VAL SER GLU GLU GLU LEU SER SEQRES 14 B 204 LEU LEU ALA GLN ASN LYS GLN SER SER LYS LEU ALA ALA SEQRES 15 B 204 LYS TRP PRO THR LYS LEU VAL LYS ASN CYS PHE LEU PRO SEQRES 16 B 204 LEU ARG GLU TYR PHE LYS TYR PHE SER SEQRES 1 C 204 GLY HIS MET PHE GLU THR VAL PRO VAL TRP ARG ARG GLN SEQRES 2 C 204 PRO VAL ARG VAL LEU SER LEU PHE GLU ASP ILE LYS LYS SEQRES 3 C 204 GLU LEU THR SER LEU GLY PHE LEU GLU SER GLY SER ASP SEQRES 4 C 204 PRO GLY GLN LEU LYS HIS VAL VAL ASP VAL THR ASP THR SEQRES 5 C 204 VAL ARG LYS ASP VAL GLU GLU TRP GLY PRO PHE ASP LEU SEQRES 6 C 204 VAL TYR GLY ALA THR PRO PRO LEU GLY HIS THR CYS ASP SEQRES 7 C 204 ARG PRO PRO SER TRP TYR LEU PHE GLN PHE HIS ARG LEU SEQRES 8 C 204 LEU GLN TYR ALA ARG PRO LYS PRO GLY SER PRO ARG PRO SEQRES 9 C 204 PHE PHE TRP MET PHE VAL ASP ASN LEU VAL LEU ASN LYS SEQRES 10 C 204 GLU ASP LEU ASP VAL ALA SER ARG PHE LEU GLU MET GLU SEQRES 11 C 204 PRO VAL THR ILE PRO ASP VAL HIS GLY GLY SER LEU GLN SEQRES 12 C 204 ASN ALA VAL ARG VAL TRP SER ASN ILE PRO ALA ILE ARG SEQRES 13 C 204 SER ARG HIS TRP ALA LEU VAL SER GLU GLU GLU LEU SER SEQRES 14 C 204 LEU LEU ALA GLN ASN LYS GLN SER SER LYS LEU ALA ALA SEQRES 15 C 204 LYS TRP PRO THR LYS LEU VAL LYS ASN CYS PHE LEU PRO SEQRES 16 C 204 LEU ARG GLU TYR PHE LYS TYR PHE SER SEQRES 1 D 286 GLY HIS MET ARG ARG ARG PRO ILE ARG VAL LEU SER LEU SEQRES 2 D 286 PHE ASP GLY ILE ALA THR GLY TYR LEU VAL LEU LYS GLU SEQRES 3 D 286 LEU GLY ILE LYS VAL GLY LYS TYR VAL ALA SER GLU VAL SEQRES 4 D 286 CYS GLU GLU SER ILE ALA VAL GLY THR VAL LYS HIS GLU SEQRES 5 D 286 GLY ASN ILE LYS TYR VAL ASN ASP VAL ARG ASN ILE THR SEQRES 6 D 286 LYS LYS ASN ILE GLU GLU TRP GLY PRO PHE ASP LEU VAL SEQRES 7 D 286 ILE GLY GLY SER PRO CYS ASN ASP LEU SER ASN VAL ASN SEQRES 8 D 286 PRO ALA ARG LYS GLY LEU TYR GLU GLY THR GLY ARG LEU SEQRES 9 D 286 PHE PHE GLU PHE TYR HIS LEU LEU ASN TYR SER ARG PRO SEQRES 10 D 286 LYS GLU GLY ASP ASP ARG PRO PHE PHE TRP MET PHE GLU SEQRES 11 D 286 ASN VAL VAL ALA MET LYS VAL GLY ASP LYS ARG ASP ILE SEQRES 12 D 286 SER ARG PHE LEU GLU CYS ASN PRO VAL MET ILE ASP ALA SEQRES 13 D 286 ILE LYS VAL SER ALA ALA HIS ARG ALA ARG TYR PHE TRP SEQRES 14 D 286 GLY ASN LEU PRO GLY MET ASN ARG PRO VAL ILE ALA SER SEQRES 15 D 286 LYS ASN ASP LYS LEU GLU LEU GLN ASP CYS LEU GLU TYR SEQRES 16 D 286 ASN ARG ILE ALA LYS LEU LYS LYS VAL GLN THR ILE THR SEQRES 17 D 286 THR LYS SER ASN SER ILE LYS GLN GLY LYS ASN GLN LEU SEQRES 18 D 286 PHE PRO VAL VAL MET ASN GLY LYS GLU ASP VAL LEU TRP SEQRES 19 D 286 CYS THR GLU LEU GLU ARG ILE PHE GLY PHE PRO VAL HIS SEQRES 20 D 286 TYR THR ASP VAL SER ASN MET GLY ARG GLY ALA ARG GLN SEQRES 21 D 286 LYS LEU LEU GLY ARG SER TRP SER VAL PRO VAL ILE ARG SEQRES 22 D 286 HIS LEU PHE ALA PRO LEU LYS ASP TYR PHE ALA CYS GLU HET FMT A 901 3 HET SAH A 902 26 HET FMT D 901 3 HET SAH D 902 26 HETNAM FMT FORMIC ACID HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 5 FMT 2(C H2 O2) FORMUL 6 SAH 2(C14 H20 N6 O5 S) FORMUL 9 HOH *111(H2 O) HELIX 1 AA1 ALA A 585 LEU A 594 1 10 HELIX 2 AA2 CYS A 607 HIS A 618 1 12 HELIX 3 AA3 ASP A 627 ILE A 631 5 5 HELIX 4 AA4 THR A 632 GLY A 640 1 9 HELIX 5 AA5 THR A 668 ARG A 670 5 3 HELIX 6 AA6 LEU A 671 ARG A 683 1 13 HELIX 7 AA7 LYS A 703 GLU A 715 1 13 HELIX 8 AA8 ILE A 724 VAL A 726 5 3 HELIX 9 AA9 GLU A 755 LEU A 760 5 6 HELIX 10 AB1 TRP A 801 PHE A 809 1 9 HELIX 11 AB2 GLY A 822 ARG A 832 1 11 HELIX 12 AB3 SER A 835 ALA A 844 1 10 HELIX 13 AB4 PRO A 845 PHE A 850 5 6 HELIX 14 AB5 ILE B 199 SER B 205 1 7 HELIX 15 AB6 VAL B 228 TRP B 235 1 8 HELIX 16 AB7 PRO B 255 ARG B 271 1 17 HELIX 17 AB8 ASN B 291 LEU B 302 1 12 HELIX 18 AB9 ILE B 330 HIS B 334 5 5 HELIX 19 AC1 SER B 339 LYS B 350 1 12 HELIX 20 AC2 PRO B 360 ASN B 366 1 7 HELIX 21 AC3 CYS B 367 ARG B 372 5 6 HELIX 22 AC4 PRO C 183 ARG C 187 5 5 HELIX 23 AC5 ILE C 199 LEU C 206 1 8 HELIX 24 AC6 VAL C 228 GLY C 236 1 9 HELIX 25 AC7 PRO C 255 ARG C 271 1 17 HELIX 26 AC8 ASN C 291 LEU C 302 1 12 HELIX 27 AC9 SER C 339 LYS C 354 1 16 HELIX 28 AD1 THR C 361 ASN C 366 1 6 HELIX 29 AD2 CYS C 367 ARG C 372 5 6 HELIX 30 AD3 ALA D 585 LEU D 594 1 10 HELIX 31 AD4 CYS D 607 HIS D 618 1 12 HELIX 32 AD5 ASP D 627 ILE D 631 5 5 HELIX 33 AD6 THR D 632 GLY D 640 1 9 HELIX 34 AD7 THR D 668 ARG D 670 5 3 HELIX 35 AD8 LEU D 671 ARG D 683 1 13 HELIX 36 AD9 LYS D 703 GLU D 715 1 13 HELIX 37 AE1 ILE D 724 VAL D 726 5 3 HELIX 38 AE2 GLU D 755 LEU D 760 5 6 HELIX 39 AE3 TRP D 801 PHE D 809 1 9 HELIX 40 AE4 GLY D 822 ARG D 832 1 11 HELIX 41 AE5 SER D 835 ALA D 844 1 10 HELIX 42 AE6 PRO D 845 PHE D 850 5 6 SHEET 1 AA1 7 LYS A 623 TYR A 624 0 SHEET 2 AA1 7 VAL A 598 SER A 604 1 N TYR A 601 O LYS A 623 SHEET 3 AA1 7 ILE A 575 LEU A 580 1 N VAL A 577 O LYS A 600 SHEET 4 AA1 7 LEU A 644 GLY A 647 1 O LEU A 644 N LEU A 578 SHEET 5 AA1 7 PHE A 693 VAL A 699 1 O GLU A 697 N GLY A 647 SHEET 6 AA1 7 ALA A 732 GLY A 737 -1 O TRP A 736 N PHE A 696 SHEET 7 AA1 7 VAL A 719 ASP A 722 -1 N VAL A 719 O PHE A 735 SHEET 1 AA2 3 ILE A 765 ALA A 766 0 SHEET 2 AA2 3 VAL A 791 MET A 793 -1 O VAL A 792 N ILE A 765 SHEET 3 AA2 3 LYS A 796 ASP A 798 -1 O LYS A 796 N MET A 793 SHEET 1 AA3 6 LEU B 218 VAL B 221 0 SHEET 2 AA3 6 VAL B 192 LEU B 195 1 N VAL B 192 O LYS B 219 SHEET 3 AA3 6 LEU B 240 ALA B 244 1 O TYR B 242 N LEU B 195 SHEET 4 AA3 6 PHE B 281 ASP B 286 1 O MET B 283 N VAL B 241 SHEET 5 AA3 6 SER B 316 SER B 325 -1 O ARG B 322 N ASP B 286 SHEET 6 AA3 6 VAL B 307 HIS B 313 -1 N ASP B 311 O ASN B 319 SHEET 1 AA4 6 LEU C 218 VAL C 221 0 SHEET 2 AA4 6 VAL C 192 LEU C 195 1 N VAL C 192 O LYS C 219 SHEET 3 AA4 6 LEU C 240 ALA C 244 1 O TYR C 242 N LEU C 195 SHEET 4 AA4 6 PHE C 281 ASP C 286 1 O MET C 283 N VAL C 241 SHEET 5 AA4 6 SER C 316 SER C 325 -1 O ARG C 322 N ASP C 286 SHEET 6 AA4 6 VAL C 307 HIS C 313 -1 N ASP C 311 O ASN C 319 SHEET 1 AA5 7 ILE D 622 VAL D 625 0 SHEET 2 AA5 7 VAL D 598 SER D 604 1 N ALA D 603 O VAL D 625 SHEET 3 AA5 7 ILE D 575 LEU D 580 1 N SER D 579 O VAL D 602 SHEET 4 AA5 7 LEU D 644 GLY D 647 1 O LEU D 644 N LEU D 578 SHEET 5 AA5 7 PHE D 693 VAL D 699 1 O MET D 695 N VAL D 645 SHEET 6 AA5 7 ALA D 732 GLY D 737 -1 O TRP D 736 N PHE D 696 SHEET 7 AA5 7 VAL D 719 ASP D 722 -1 N VAL D 719 O PHE D 735 SHEET 1 AA6 3 ILE D 765 ALA D 766 0 SHEET 2 AA6 3 VAL D 791 MET D 793 -1 O VAL D 792 N ILE D 765 SHEET 3 AA6 3 LYS D 796 ASP D 798 -1 O ASP D 798 N VAL D 791 CISPEP 1 GLY A 640 PRO A 641 0 1.09 CISPEP 2 GLY C 236 PRO C 237 0 0.20 CISPEP 3 GLY D 640 PRO D 641 0 -0.63 SITE 1 AC1 2 ASN A 717 GLY A 737 SITE 1 AC2 16 PHE A 581 ASP A 582 GLY A 583 ILE A 584 SITE 2 AC2 16 THR A 586 SER A 604 GLU A 605 CYS A 607 SITE 3 AC2 16 ASP A 627 VAL A 628 GLY A 648 PRO A 650 SITE 4 AC2 16 LEU A 671 ARG A 832 SER A 833 TRP A 834 SITE 1 AC3 3 ASN D 717 GLY D 737 ASN D 743 SITE 1 AC4 16 PHE D 581 ASP D 582 GLY D 583 ILE D 584 SITE 2 AC4 16 THR D 586 SER D 604 GLU D 605 VAL D 606 SITE 3 AC4 16 ASP D 627 VAL D 628 ARG D 629 GLY D 648 SITE 4 AC4 16 LEU D 671 ARG D 832 SER D 833 TRP D 834 CRYST1 72.105 234.066 230.951 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013869 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004330 0.00000