HEADER TRANSFERASE 02-JUL-19 6KDT TITLE CRYSTAL STRUCTURE OF HUMAN DNMT3B (Q772R)-DNMT3L COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE 3B; COMPND 3 CHAIN: A, D; COMPND 4 SYNONYM: DNMT3B,DNA METHYLTRANSFERASE HSAIIIB,M.HSAIIIB; COMPND 5 EC: 2.1.1.37; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE 3-LIKE; COMPND 10 CHAIN: B, C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNMT3B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: DNMT3L; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNMT3B, DNA METHYLTRANSFERASE, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.-C.LIN,Y.-P.CHEN,W.-Z.YANG,C.-K.SHEN,H.S.YUAN REVDAT 4 22-NOV-23 6KDT 1 REMARK REVDAT 3 22-APR-20 6KDT 1 JRNL REVDAT 2 04-MAR-20 6KDT 1 JRNL REVDAT 1 19-FEB-20 6KDT 0 JRNL AUTH C.C.LIN,Y.P.CHEN,W.Z.YANG,J.C.K.SHEN,H.S.YUAN JRNL TITL STRUCTURAL INSIGHTS INTO CPG-SPECIFIC DNA METHYLATION BY JRNL TITL 2 HUMAN DNA METHYLTRANSFERASE 3B. JRNL REF NUCLEIC ACIDS RES. V. 48 3949 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32083663 JRNL DOI 10.1093/NAR/GKAA111 REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14-3260-000 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 36770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.9400 - 2.8670 0.72 0 0 0.2944 0.3620 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KDT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012795. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36776 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5YX2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M SODIUM FORMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 278K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.06550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 116.06550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.17500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 120.39200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.17500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 120.39200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 116.06550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.17500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 120.39200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 116.06550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.17500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 120.39200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 568 REMARK 465 ILE A 774 REMARK 465 THR A 775 REMARK 465 THR A 776 REMARK 465 LYS A 777 REMARK 465 SER A 778 REMARK 465 ASN A 779 REMARK 465 SER A 780 REMARK 465 ILE A 781 REMARK 465 LYS A 782 REMARK 465 GLN A 783 REMARK 465 GLY A 784 REMARK 465 LYS A 785 REMARK 465 ASN A 786 REMARK 465 GLY B 176 REMARK 465 HIS B 177 REMARK 465 MET B 178 REMARK 465 LEU B 355 REMARK 465 ALA B 356 REMARK 465 ALA B 357 REMARK 465 GLY C 176 REMARK 465 HIS C 177 REMARK 465 ASP C 214 REMARK 465 PRO C 215 REMARK 465 ILE D 774 REMARK 465 THR D 775 REMARK 465 THR D 776 REMARK 465 LYS D 777 REMARK 465 SER D 778 REMARK 465 ASN D 779 REMARK 465 SER D 780 REMARK 465 ILE D 781 REMARK 465 LYS D 782 REMARK 465 GLN D 783 REMARK 465 GLY D 784 REMARK 465 LYS D 785 REMARK 465 ASN D 786 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 626 -144.80 69.84 REMARK 500 ALA A 660 34.77 -98.23 REMARK 500 GLU A 715 36.53 70.96 REMARK 500 SER A 727 -166.52 -125.81 REMARK 500 PHE B 196 -69.49 74.77 REMARK 500 THR B 251 96.29 -66.41 REMARK 500 SER B 276 76.13 -114.92 REMARK 500 ASN B 287 55.35 -96.22 REMARK 500 MET B 304 140.27 -178.06 REMARK 500 PHE C 196 -65.75 68.55 REMARK 500 SER C 211 109.71 -59.07 REMARK 500 MET C 304 147.65 -171.90 REMARK 500 ILE D 584 32.46 -92.51 REMARK 500 ASN D 626 -148.08 67.33 REMARK 500 ALA D 701 79.37 -69.55 REMARK 500 ASN D 820 16.97 52.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1055 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1056 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH D1058 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH D1059 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH D1060 DISTANCE = 6.50 ANGSTROMS REMARK 525 HOH D1061 DISTANCE = 6.99 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT D 902 DBREF 6KDT A 571 853 UNP Q9UBC3 DNM3B_HUMAN 571 853 DBREF 6KDT B 178 379 UNP Q9UJW3 DNM3L_HUMAN 178 379 DBREF 6KDT C 178 379 UNP Q9UJW3 DNM3L_HUMAN 178 379 DBREF 6KDT D 571 853 UNP Q9UBC3 DNM3B_HUMAN 571 853 SEQADV 6KDT GLY A 568 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDT HIS A 569 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDT MET A 570 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDT ARG A 772 UNP Q9UBC3 GLN 772 ENGINEERED MUTATION SEQADV 6KDT GLY B 176 UNP Q9UJW3 EXPRESSION TAG SEQADV 6KDT HIS B 177 UNP Q9UJW3 EXPRESSION TAG SEQADV 6KDT GLY C 176 UNP Q9UJW3 EXPRESSION TAG SEQADV 6KDT HIS C 177 UNP Q9UJW3 EXPRESSION TAG SEQADV 6KDT GLY D 568 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDT HIS D 569 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDT MET D 570 UNP Q9UBC3 EXPRESSION TAG SEQADV 6KDT ARG D 772 UNP Q9UBC3 GLN 772 ENGINEERED MUTATION SEQRES 1 A 286 GLY HIS MET ARG ARG ARG PRO ILE ARG VAL LEU SER LEU SEQRES 2 A 286 PHE ASP GLY ILE ALA THR GLY TYR LEU VAL LEU LYS GLU SEQRES 3 A 286 LEU GLY ILE LYS VAL GLY LYS TYR VAL ALA SER GLU VAL SEQRES 4 A 286 CYS GLU GLU SER ILE ALA VAL GLY THR VAL LYS HIS GLU SEQRES 5 A 286 GLY ASN ILE LYS TYR VAL ASN ASP VAL ARG ASN ILE THR SEQRES 6 A 286 LYS LYS ASN ILE GLU GLU TRP GLY PRO PHE ASP LEU VAL SEQRES 7 A 286 ILE GLY GLY SER PRO CYS ASN ASP LEU SER ASN VAL ASN SEQRES 8 A 286 PRO ALA ARG LYS GLY LEU TYR GLU GLY THR GLY ARG LEU SEQRES 9 A 286 PHE PHE GLU PHE TYR HIS LEU LEU ASN TYR SER ARG PRO SEQRES 10 A 286 LYS GLU GLY ASP ASP ARG PRO PHE PHE TRP MET PHE GLU SEQRES 11 A 286 ASN VAL VAL ALA MET LYS VAL GLY ASP LYS ARG ASP ILE SEQRES 12 A 286 SER ARG PHE LEU GLU CYS ASN PRO VAL MET ILE ASP ALA SEQRES 13 A 286 ILE LYS VAL SER ALA ALA HIS ARG ALA ARG TYR PHE TRP SEQRES 14 A 286 GLY ASN LEU PRO GLY MET ASN ARG PRO VAL ILE ALA SER SEQRES 15 A 286 LYS ASN ASP LYS LEU GLU LEU GLN ASP CYS LEU GLU TYR SEQRES 16 A 286 ASN ARG ILE ALA LYS LEU LYS LYS VAL ARG THR ILE THR SEQRES 17 A 286 THR LYS SER ASN SER ILE LYS GLN GLY LYS ASN GLN LEU SEQRES 18 A 286 PHE PRO VAL VAL MET ASN GLY LYS GLU ASP VAL LEU TRP SEQRES 19 A 286 CYS THR GLU LEU GLU ARG ILE PHE GLY PHE PRO VAL HIS SEQRES 20 A 286 TYR THR ASP VAL SER ASN MET GLY ARG GLY ALA ARG GLN SEQRES 21 A 286 LYS LEU LEU GLY ARG SER TRP SER VAL PRO VAL ILE ARG SEQRES 22 A 286 HIS LEU PHE ALA PRO LEU LYS ASP TYR PHE ALA CYS GLU SEQRES 1 B 204 GLY HIS MET PHE GLU THR VAL PRO VAL TRP ARG ARG GLN SEQRES 2 B 204 PRO VAL ARG VAL LEU SER LEU PHE GLU ASP ILE LYS LYS SEQRES 3 B 204 GLU LEU THR SER LEU GLY PHE LEU GLU SER GLY SER ASP SEQRES 4 B 204 PRO GLY GLN LEU LYS HIS VAL VAL ASP VAL THR ASP THR SEQRES 5 B 204 VAL ARG LYS ASP VAL GLU GLU TRP GLY PRO PHE ASP LEU SEQRES 6 B 204 VAL TYR GLY ALA THR PRO PRO LEU GLY HIS THR CYS ASP SEQRES 7 B 204 ARG PRO PRO SER TRP TYR LEU PHE GLN PHE HIS ARG LEU SEQRES 8 B 204 LEU GLN TYR ALA ARG PRO LYS PRO GLY SER PRO ARG PRO SEQRES 9 B 204 PHE PHE TRP MET PHE VAL ASP ASN LEU VAL LEU ASN LYS SEQRES 10 B 204 GLU ASP LEU ASP VAL ALA SER ARG PHE LEU GLU MET GLU SEQRES 11 B 204 PRO VAL THR ILE PRO ASP VAL HIS GLY GLY SER LEU GLN SEQRES 12 B 204 ASN ALA VAL ARG VAL TRP SER ASN ILE PRO ALA ILE ARG SEQRES 13 B 204 SER ARG HIS TRP ALA LEU VAL SER GLU GLU GLU LEU SER SEQRES 14 B 204 LEU LEU ALA GLN ASN LYS GLN SER SER LYS LEU ALA ALA SEQRES 15 B 204 LYS TRP PRO THR LYS LEU VAL LYS ASN CYS PHE LEU PRO SEQRES 16 B 204 LEU ARG GLU TYR PHE LYS TYR PHE SER SEQRES 1 C 204 GLY HIS MET PHE GLU THR VAL PRO VAL TRP ARG ARG GLN SEQRES 2 C 204 PRO VAL ARG VAL LEU SER LEU PHE GLU ASP ILE LYS LYS SEQRES 3 C 204 GLU LEU THR SER LEU GLY PHE LEU GLU SER GLY SER ASP SEQRES 4 C 204 PRO GLY GLN LEU LYS HIS VAL VAL ASP VAL THR ASP THR SEQRES 5 C 204 VAL ARG LYS ASP VAL GLU GLU TRP GLY PRO PHE ASP LEU SEQRES 6 C 204 VAL TYR GLY ALA THR PRO PRO LEU GLY HIS THR CYS ASP SEQRES 7 C 204 ARG PRO PRO SER TRP TYR LEU PHE GLN PHE HIS ARG LEU SEQRES 8 C 204 LEU GLN TYR ALA ARG PRO LYS PRO GLY SER PRO ARG PRO SEQRES 9 C 204 PHE PHE TRP MET PHE VAL ASP ASN LEU VAL LEU ASN LYS SEQRES 10 C 204 GLU ASP LEU ASP VAL ALA SER ARG PHE LEU GLU MET GLU SEQRES 11 C 204 PRO VAL THR ILE PRO ASP VAL HIS GLY GLY SER LEU GLN SEQRES 12 C 204 ASN ALA VAL ARG VAL TRP SER ASN ILE PRO ALA ILE ARG SEQRES 13 C 204 SER ARG HIS TRP ALA LEU VAL SER GLU GLU GLU LEU SER SEQRES 14 C 204 LEU LEU ALA GLN ASN LYS GLN SER SER LYS LEU ALA ALA SEQRES 15 C 204 LYS TRP PRO THR LYS LEU VAL LYS ASN CYS PHE LEU PRO SEQRES 16 C 204 LEU ARG GLU TYR PHE LYS TYR PHE SER SEQRES 1 D 286 GLY HIS MET ARG ARG ARG PRO ILE ARG VAL LEU SER LEU SEQRES 2 D 286 PHE ASP GLY ILE ALA THR GLY TYR LEU VAL LEU LYS GLU SEQRES 3 D 286 LEU GLY ILE LYS VAL GLY LYS TYR VAL ALA SER GLU VAL SEQRES 4 D 286 CYS GLU GLU SER ILE ALA VAL GLY THR VAL LYS HIS GLU SEQRES 5 D 286 GLY ASN ILE LYS TYR VAL ASN ASP VAL ARG ASN ILE THR SEQRES 6 D 286 LYS LYS ASN ILE GLU GLU TRP GLY PRO PHE ASP LEU VAL SEQRES 7 D 286 ILE GLY GLY SER PRO CYS ASN ASP LEU SER ASN VAL ASN SEQRES 8 D 286 PRO ALA ARG LYS GLY LEU TYR GLU GLY THR GLY ARG LEU SEQRES 9 D 286 PHE PHE GLU PHE TYR HIS LEU LEU ASN TYR SER ARG PRO SEQRES 10 D 286 LYS GLU GLY ASP ASP ARG PRO PHE PHE TRP MET PHE GLU SEQRES 11 D 286 ASN VAL VAL ALA MET LYS VAL GLY ASP LYS ARG ASP ILE SEQRES 12 D 286 SER ARG PHE LEU GLU CYS ASN PRO VAL MET ILE ASP ALA SEQRES 13 D 286 ILE LYS VAL SER ALA ALA HIS ARG ALA ARG TYR PHE TRP SEQRES 14 D 286 GLY ASN LEU PRO GLY MET ASN ARG PRO VAL ILE ALA SER SEQRES 15 D 286 LYS ASN ASP LYS LEU GLU LEU GLN ASP CYS LEU GLU TYR SEQRES 16 D 286 ASN ARG ILE ALA LYS LEU LYS LYS VAL ARG THR ILE THR SEQRES 17 D 286 THR LYS SER ASN SER ILE LYS GLN GLY LYS ASN GLN LEU SEQRES 18 D 286 PHE PRO VAL VAL MET ASN GLY LYS GLU ASP VAL LEU TRP SEQRES 19 D 286 CYS THR GLU LEU GLU ARG ILE PHE GLY PHE PRO VAL HIS SEQRES 20 D 286 TYR THR ASP VAL SER ASN MET GLY ARG GLY ALA ARG GLN SEQRES 21 D 286 LYS LEU LEU GLY ARG SER TRP SER VAL PRO VAL ILE ARG SEQRES 22 D 286 HIS LEU PHE ALA PRO LEU LYS ASP TYR PHE ALA CYS GLU HET SAH A 901 26 HET FMT A 902 3 HET SAH D 901 26 HET FMT D 902 3 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM FMT FORMIC ACID FORMUL 5 SAH 2(C14 H20 N6 O5 S) FORMUL 6 FMT 2(C H2 O2) FORMUL 9 HOH *160(H2 O) HELIX 1 AA1 ALA A 585 LEU A 594 1 10 HELIX 2 AA2 CYS A 607 HIS A 618 1 12 HELIX 3 AA3 ASP A 627 ILE A 631 5 5 HELIX 4 AA4 THR A 632 GLY A 640 1 9 HELIX 5 AA5 ARG A 670 ARG A 683 1 14 HELIX 6 AA6 LYS A 703 GLU A 715 1 13 HELIX 7 AA7 ILE A 724 VAL A 726 5 3 HELIX 8 AA8 GLU A 755 LEU A 760 5 6 HELIX 9 AA9 TRP A 801 PHE A 809 1 9 HELIX 10 AB1 GLY A 822 ARG A 832 1 11 HELIX 11 AB2 SER A 835 ALA A 844 1 10 HELIX 12 AB3 PRO A 845 PHE A 850 5 6 HELIX 13 AB4 PRO B 183 ARG B 187 5 5 HELIX 14 AB5 ILE B 199 SER B 205 1 7 HELIX 15 AB6 VAL B 228 GLY B 236 1 9 HELIX 16 AB7 PRO B 255 ARG B 271 1 17 HELIX 17 AB8 ASN B 291 LEU B 302 1 12 HELIX 18 AB9 ALA B 329 HIS B 334 5 6 HELIX 19 AC1 SER B 339 LYS B 354 1 16 HELIX 20 AC2 PRO B 360 ASN B 366 1 7 HELIX 21 AC3 CYS B 367 GLU B 373 5 7 HELIX 22 AC4 PRO C 183 ARG C 187 5 5 HELIX 23 AC5 ILE C 199 LEU C 206 1 8 HELIX 24 AC6 VAL C 228 GLY C 236 1 9 HELIX 25 AC7 PRO C 255 ARG C 271 1 17 HELIX 26 AC8 ASN C 291 LEU C 302 1 12 HELIX 27 AC9 ALA C 329 ARG C 333 5 5 HELIX 28 AD1 SER C 339 SER C 353 1 15 HELIX 29 AD2 THR C 361 ASN C 366 1 6 HELIX 30 AD3 CYS C 367 TYR C 374 5 8 HELIX 31 AD4 ALA D 585 LEU D 594 1 10 HELIX 32 AD5 CYS D 607 HIS D 618 1 12 HELIX 33 AD6 ASP D 627 ILE D 631 5 5 HELIX 34 AD7 THR D 632 GLY D 640 1 9 HELIX 35 AD8 ARG D 670 ARG D 683 1 14 HELIX 36 AD9 LYS D 703 GLU D 715 1 13 HELIX 37 AE1 ILE D 724 VAL D 726 5 3 HELIX 38 AE2 GLU D 755 LEU D 760 5 6 HELIX 39 AE3 TRP D 801 PHE D 809 1 9 HELIX 40 AE4 GLY D 822 ARG D 832 1 11 HELIX 41 AE5 SER D 835 ALA D 844 1 10 HELIX 42 AE6 PRO D 845 TYR D 849 5 5 SHEET 1 AA1 7 LYS A 623 TYR A 624 0 SHEET 2 AA1 7 VAL A 598 SER A 604 1 N TYR A 601 O LYS A 623 SHEET 3 AA1 7 ILE A 575 LEU A 580 1 N VAL A 577 O LYS A 600 SHEET 4 AA1 7 LEU A 644 GLY A 647 1 O ILE A 646 N LEU A 580 SHEET 5 AA1 7 PHE A 693 VAL A 699 1 O PHE A 693 N VAL A 645 SHEET 6 AA1 7 ALA A 732 GLY A 737 -1 O TRP A 736 N PHE A 696 SHEET 7 AA1 7 VAL A 719 ASP A 722 -1 N VAL A 719 O PHE A 735 SHEET 1 AA2 2 ALA A 729 HIS A 730 0 SHEET 2 AA2 2 VAL A 771 ARG A 772 1 O VAL A 771 N HIS A 730 SHEET 1 AA3 3 ILE A 765 ALA A 766 0 SHEET 2 AA3 3 VAL A 791 MET A 793 -1 O VAL A 792 N ILE A 765 SHEET 3 AA3 3 LYS A 796 ASP A 798 -1 O LYS A 796 N MET A 793 SHEET 1 AA4 6 LEU B 218 VAL B 221 0 SHEET 2 AA4 6 VAL B 192 LEU B 195 1 N SER B 194 O LYS B 219 SHEET 3 AA4 6 LEU B 240 ALA B 244 1 O TYR B 242 N LEU B 195 SHEET 4 AA4 6 PHE B 281 ASP B 286 1 O MET B 283 N VAL B 241 SHEET 5 AA4 6 SER B 316 SER B 325 -1 O ARG B 322 N ASP B 286 SHEET 6 AA4 6 VAL B 307 HIS B 313 -1 N ASP B 311 O ASN B 319 SHEET 1 AA5 6 LEU C 218 VAL C 221 0 SHEET 2 AA5 6 VAL C 192 LEU C 195 1 N SER C 194 O LYS C 219 SHEET 3 AA5 6 LEU C 240 ALA C 244 1 O LEU C 240 N LEU C 193 SHEET 4 AA5 6 PHE C 281 ASP C 286 1 O MET C 283 N GLY C 243 SHEET 5 AA5 6 SER C 316 SER C 325 -1 O TRP C 324 N PHE C 284 SHEET 6 AA5 6 VAL C 307 HIS C 313 -1 N ASP C 311 O ASN C 319 SHEET 1 AA6 7 ILE D 622 TYR D 624 0 SHEET 2 AA6 7 VAL D 598 SER D 604 1 N ALA D 603 O LYS D 623 SHEET 3 AA6 7 ILE D 575 LEU D 580 1 N VAL D 577 O LYS D 600 SHEET 4 AA6 7 LEU D 644 GLY D 648 1 O ILE D 646 N LEU D 580 SHEET 5 AA6 7 PHE D 693 VAL D 699 1 O GLU D 697 N GLY D 647 SHEET 6 AA6 7 ALA D 732 GLY D 737 -1 O TYR D 734 N ASN D 698 SHEET 7 AA6 7 VAL D 719 ASP D 722 -1 N VAL D 719 O PHE D 735 SHEET 1 AA7 2 ALA D 729 HIS D 730 0 SHEET 2 AA7 2 VAL D 771 ARG D 772 1 O VAL D 771 N HIS D 730 SHEET 1 AA8 3 ILE D 765 ALA D 766 0 SHEET 2 AA8 3 VAL D 791 MET D 793 -1 O VAL D 792 N ILE D 765 SHEET 3 AA8 3 LYS D 796 ASP D 798 -1 O LYS D 796 N MET D 793 CISPEP 1 GLY A 640 PRO A 641 0 1.15 CISPEP 2 GLY B 236 PRO B 237 0 -3.49 CISPEP 3 GLY C 236 PRO C 237 0 4.09 CISPEP 4 GLY D 640 PRO D 641 0 -2.01 SITE 1 AC1 15 PHE A 581 ASP A 582 GLY A 583 ILE A 584 SITE 2 AC1 15 THR A 586 SER A 604 GLU A 605 VAL A 606 SITE 3 AC1 15 ASP A 627 VAL A 628 ARG A 629 GLY A 648 SITE 4 AC1 15 PRO A 650 ARG A 832 TRP A 834 SITE 1 AC2 4 ASN A 717 VAL A 719 GLY A 737 ASN A 743 SITE 1 AC3 17 PHE D 581 ASP D 582 GLY D 583 ILE D 584 SITE 2 AC3 17 THR D 586 SER D 604 GLU D 605 VAL D 606 SITE 3 AC3 17 CYS D 607 ASP D 627 VAL D 628 GLY D 648 SITE 4 AC3 17 LEU D 671 ARG D 832 SER D 833 TRP D 834 SITE 5 AC3 17 HOH D1001 SITE 1 AC4 3 ASN D 717 GLY D 737 ASN D 743 CRYST1 60.350 240.784 232.131 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004308 0.00000