HEADER TRANSPORT PROTEIN 08-JUL-19 6KFQ TITLE CRYSTAL STRUCTURE OF THERMOPHILIC RHODOPSIN FROM RUBROBACTER TITLE 2 XYLANOPHILUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHODOPSIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUBROBACTER XYLANOPHILUS (STRAIN DSM 9941 / SOURCE 3 NBRC 16129); SOURCE 4 ORGANISM_TAXID: 266117; SOURCE 5 STRAIN: DSM 9941 / NBRC 16129; SOURCE 6 GENE: RXYL_2037; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RHODOPSIN, TRANSPORTER, H+ TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.SUZUKI,T.AKIYAMA,T.HAYASHI,S.YASUDA,K.KANEHARA,K.KOJIMA,M.TANABE, AUTHOR 2 R.KATO,T.SENDA,Y.SUDO,M.KINOSHITA,T.MURATA REVDAT 2 22-NOV-23 6KFQ 1 REMARK REVDAT 1 08-APR-20 6KFQ 0 JRNL AUTH T.HAYASHI,S.YASUDA,K.SUZUKI,T.AKIYAMA,K.KANEHARA,K.KOJIMA, JRNL AUTH 2 M.TANABE,R.KATO,T.SENDA,Y.SUDO,T.MURATA,M.KINOSHITA JRNL TITL HOW DOES A MICROBIAL RHODOPSIN RXR REALIZE ITS EXCEPTIONALLY JRNL TITL 2 HIGH THERMOSTABILITY WITH THE PROTON-PUMPING FUNCTION BEING JRNL TITL 3 RETAINED? JRNL REF J.PHYS.CHEM.B V. 124 990 2020 JRNL REFN ISSN 1089-5647 JRNL PMID 31955569 JRNL DOI 10.1021/ACS.JPCB.9B10700 REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19905 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.2000 - 3.5200 1.00 2878 152 0.1881 0.2104 REMARK 3 2 3.5200 - 2.7900 1.00 2731 144 0.1880 0.2151 REMARK 3 3 2.7900 - 2.4400 1.00 2706 142 0.1798 0.2197 REMARK 3 4 2.4400 - 2.2200 1.00 2683 142 0.1824 0.2379 REMARK 3 5 2.2200 - 2.0600 1.00 2667 140 0.1946 0.2372 REMARK 3 6 2.0600 - 1.9400 1.00 2657 140 0.2223 0.2794 REMARK 3 7 1.9400 - 1.8400 0.98 2586 137 0.2782 0.3466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.222 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.663 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1992 REMARK 3 ANGLE : 0.735 2655 REMARK 3 CHIRALITY : 0.041 313 REMARK 3 PLANARITY : 0.005 297 REMARK 3 DIHEDRAL : 14.090 1157 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9459 -19.5666 -24.8095 REMARK 3 T TENSOR REMARK 3 T11: 0.5035 T22: 0.2829 REMARK 3 T33: 0.3812 T12: -0.1749 REMARK 3 T13: 0.1399 T23: -0.1001 REMARK 3 L TENSOR REMARK 3 L11: 1.8569 L22: 1.9078 REMARK 3 L33: 1.1912 L12: -0.1407 REMARK 3 L13: -0.7988 L23: 0.3578 REMARK 3 S TENSOR REMARK 3 S11: -0.0701 S12: 0.0687 S13: -0.0994 REMARK 3 S21: 0.6783 S22: -0.1500 S23: 0.3076 REMARK 3 S31: 0.7640 S32: -0.4372 S33: 0.1808 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8334 -12.3883 -22.6023 REMARK 3 T TENSOR REMARK 3 T11: 0.3153 T22: 0.4589 REMARK 3 T33: 0.3950 T12: -0.1992 REMARK 3 T13: 0.1123 T23: -0.1642 REMARK 3 L TENSOR REMARK 3 L11: 1.4675 L22: 1.8811 REMARK 3 L33: 3.0722 L12: -0.3355 REMARK 3 L13: -0.8699 L23: 1.0624 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: -0.1141 S13: -0.0471 REMARK 3 S21: 0.4724 S22: -0.4753 S23: 0.5375 REMARK 3 S31: 0.1752 S32: -0.7908 S33: 0.2509 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6516 -3.2674 -28.0495 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.3137 REMARK 3 T33: 0.2600 T12: 0.0421 REMARK 3 T13: -0.0327 T23: -0.0620 REMARK 3 L TENSOR REMARK 3 L11: 0.5977 L22: 2.8842 REMARK 3 L33: 4.8111 L12: -0.1742 REMARK 3 L13: 0.9051 L23: 0.5617 REMARK 3 S TENSOR REMARK 3 S11: -0.0568 S12: 0.2193 S13: -0.0345 REMARK 3 S21: -0.4450 S22: -0.3225 S23: 0.2812 REMARK 3 S31: -0.0269 S32: -0.6420 S33: 0.3440 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9262 2.8598 -3.4943 REMARK 3 T TENSOR REMARK 3 T11: 0.8921 T22: 0.5360 REMARK 3 T33: 0.5446 T12: 0.1257 REMARK 3 T13: 0.2211 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 6.0789 L22: 4.0943 REMARK 3 L33: 1.6415 L12: -1.8253 REMARK 3 L13: 3.1373 L23: -1.1962 REMARK 3 S TENSOR REMARK 3 S11: -0.5212 S12: -0.6761 S13: -0.2610 REMARK 3 S21: 2.0176 S22: -0.0122 S23: 1.6428 REMARK 3 S31: -0.2148 S32: -1.1052 S33: 0.5701 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1781 6.8119 -22.4525 REMARK 3 T TENSOR REMARK 3 T11: 0.2817 T22: 0.2049 REMARK 3 T33: 0.2887 T12: 0.0960 REMARK 3 T13: -0.0257 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 2.0262 L22: 4.5050 REMARK 3 L33: 4.2632 L12: -0.9619 REMARK 3 L13: 0.2750 L23: 0.4983 REMARK 3 S TENSOR REMARK 3 S11: 0.1083 S12: 0.1444 S13: 0.1950 REMARK 3 S21: -0.3428 S22: -0.1372 S23: -0.1872 REMARK 3 S31: -0.5958 S32: -0.2444 S33: 0.0019 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9309 -3.5596 -16.5988 REMARK 3 T TENSOR REMARK 3 T11: 0.1965 T22: 0.1782 REMARK 3 T33: 0.2474 T12: 0.0090 REMARK 3 T13: -0.0362 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: 1.5867 L22: 3.8190 REMARK 3 L33: 8.2162 L12: -0.6414 REMARK 3 L13: -1.6260 L23: -0.5530 REMARK 3 S TENSOR REMARK 3 S11: -0.1184 S12: -0.1882 S13: 0.0200 REMARK 3 S21: 0.4373 S22: 0.0208 S23: -0.3626 REMARK 3 S31: 0.0946 S32: 0.3772 S33: 0.0283 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7881 -9.1701 -28.9330 REMARK 3 T TENSOR REMARK 3 T11: 0.1760 T22: 0.2191 REMARK 3 T33: 0.3060 T12: -0.0058 REMARK 3 T13: 0.0223 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.2572 L22: 3.6533 REMARK 3 L33: 2.8277 L12: -0.7924 REMARK 3 L13: -0.3399 L23: 2.5815 REMARK 3 S TENSOR REMARK 3 S11: 0.0518 S12: 0.1482 S13: 0.0142 REMARK 3 S21: -0.1280 S22: -0.0723 S23: -0.1347 REMARK 3 S31: 0.0550 S32: -0.1251 S33: 0.0026 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0269 -12.9334 -1.0829 REMARK 3 T TENSOR REMARK 3 T11: 1.0961 T22: 0.3413 REMARK 3 T33: 0.3425 T12: -0.0855 REMARK 3 T13: 0.1682 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 5.4312 L22: 5.7170 REMARK 3 L33: 2.3534 L12: 0.3317 REMARK 3 L13: -0.1104 L23: 3.6533 REMARK 3 S TENSOR REMARK 3 S11: 0.0420 S12: -0.6185 S13: -0.4889 REMARK 3 S21: 0.8244 S22: -0.4620 S23: 0.1152 REMARK 3 S31: 0.9161 S32: -0.1294 S33: 0.4214 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012725. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-AUG-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19923 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 42.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 42.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.69 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 53.23 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4Y9H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES (PH 6.0), 100 MM LI2SO4, REMARK 280 30% PEG 600 (V/V), LIPIDIC CUBIC PHASE, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.96500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.95500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.20500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.95500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.96500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.20500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 230 REMARK 465 VAL A 231 REMARK 465 ALA A 232 REMARK 465 GLY A 233 REMARK 465 THR A 234 REMARK 465 ALA A 235 REMARK 465 ARG A 236 REMARK 465 ARG A 237 REMARK 465 VAL A 238 REMARK 465 ALA A 239 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 32 CZ NH1 NH2 REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 96 CD NE CZ NH1 NH2 REMARK 470 SER A 228 OG REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 MPG A 302 REMARK 610 MPG A 303 REMARK 610 MPG A 305 REMARK 610 MPG A 306 REMARK 610 MPG A 307 REMARK 610 MPG A 308 REMARK 610 MPG A 309 REMARK 610 MPG A 310 REMARK 610 MPG A 311 REMARK 610 MPG A 312 REMARK 610 MPG A 313 REMARK 610 MPG A 314 REMARK 610 MPG A 315 REMARK 610 MPG A 316 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPG A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RET A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 319 DBREF 6KFQ A 1 239 UNP Q1AUE6 Q1AUE6_RUBXD 1 239 SEQRES 1 A 239 MET GLU ALA LEU TRP LEU TRP ILE GLY PHE VAL GLY MET SEQRES 2 A 239 LEU LEU GLY THR LEU TYR PHE ALA PHE LEU LEU THR ASN SEQRES 3 A 239 ALA PRO GLU GLY THR ARG TYR PHE PHE VAL ILE THR ALA SEQRES 4 A 239 THR ILE THR GLY ILE ALA ALA ILE ALA TYR LEU VAL MET SEQRES 5 A 239 ALA THR GLY SER GLY SER THR VAL LEU PRO ASP GLY ARG SEQRES 6 A 239 GLU PHE TYR TRP ALA ARG TYR ILE ASP TRP VAL ILE THR SEQRES 7 A 239 THR PRO LEU LEU LEU LEU ASP LEU CYS LEU LEU ALA LEU SEQRES 8 A 239 ALA ASP PRO ARG ARG ASN VAL THR PHE ILE ALA SER LEU SEQRES 9 A 239 ILE ALA LEU ASP VAL VAL MET ILE LEU THR GLY LEU TRP SEQRES 10 A 239 ALA GLY ALA THR VAL ASN VAL ALA GLY ARG ALA ILE LEU SEQRES 11 A 239 PHE ILE ILE SER THR ALA ALA PHE ILE GLY VAL LEU TYR SEQRES 12 A 239 LEU LEU VAL SER ARG LEU PHE ALA GLU ALA SER ARG ARG SEQRES 13 A 239 THR PRO ALA VAL ALA GLN ILE PHE ARG THR LEU ALA VAL SEQRES 14 A 239 LEU THR ILE VAL LEU TRP ILE CYS TYR PRO ILE VAL TRP SEQRES 15 A 239 LEU ILE GLY THR GLU GLY PHE GLY ALA VAL SER LEU SER SEQRES 16 A 239 VAL GLU VAL PHE LEU PHE MET VAL LEU ASP LEU LEU ALA SEQRES 17 A 239 LYS VAL GLY PHE GLY LEU LEU LEU LEU SER SER ARG GLN SEQRES 18 A 239 ALA LEU SER ASP ILE GLY SER GLY ALA VAL ALA GLY THR SEQRES 19 A 239 ALA ARG ARG VAL ALA HET MPG A 301 25 HET MPG A 302 17 HET MPG A 303 14 HET MPG A 304 25 HET MPG A 305 15 HET MPG A 306 16 HET MPG A 307 7 HET MPG A 308 5 HET MPG A 309 5 HET MPG A 310 4 HET MPG A 311 4 HET MPG A 312 11 HET MPG A 313 6 HET MPG A 314 18 HET MPG A 315 4 HET MPG A 316 12 HET RET A 317 20 HET SO4 A 318 5 HET SO4 A 319 5 HETNAM MPG [(Z)-OCTADEC-9-ENYL] (2R)-2,3-BIS(OXIDANYL)PROPANOATE HETNAM RET RETINAL HETNAM SO4 SULFATE ION FORMUL 2 MPG 16(C21 H40 O4) FORMUL 18 RET C20 H28 O FORMUL 19 SO4 2(O4 S 2-) FORMUL 21 HOH *20(H2 O) HELIX 1 AA1 MET A 1 LEU A 24 1 24 HELIX 2 AA2 THR A 25 ALA A 27 5 3 HELIX 3 AA3 THR A 31 THR A 54 1 24 HELIX 4 AA4 TRP A 69 LEU A 91 1 23 HELIX 5 AA5 ASP A 93 ARG A 96 5 4 HELIX 6 AA6 ASN A 97 THR A 121 1 25 HELIX 7 AA7 ASN A 123 ARG A 148 1 26 HELIX 8 AA8 ARG A 148 SER A 154 1 7 HELIX 9 AA9 THR A 157 GLY A 185 1 29 HELIX 10 AB1 SER A 193 SER A 219 1 27 HELIX 11 AB2 SER A 219 GLY A 229 1 11 SHEET 1 AA1 2 THR A 59 VAL A 60 0 SHEET 2 AA1 2 GLU A 66 PHE A 67 -1 O PHE A 67 N THR A 59 LINK NZ LYS A 209 C15 RET A 317 1555 1555 1.43 SITE 1 AC1 3 TRP A 117 GLY A 126 MPG A 311 SITE 1 AC2 3 TYR A 143 MPG A 312 MPG A 314 SITE 1 AC3 3 LEU A 18 ALA A 128 MPG A 315 SITE 1 AC4 7 MET A 1 ILE A 47 THR A 99 SER A 103 SITE 2 AC4 7 ALA A 106 MPG A 314 SO4 A 318 SITE 1 AC5 4 SER A 56 LEU A 200 MPG A 316 HOH A 405 SITE 1 AC6 1 LEU A 81 SITE 1 AC7 1 MPG A 312 SITE 1 AC8 2 LEU A 170 VAL A 173 SITE 1 AC9 1 GLY A 211 SITE 1 AD1 1 MPG A 301 SITE 1 AD2 3 ILE A 180 MPG A 302 MPG A 308 SITE 1 AD3 2 ILE A 44 ALA A 48 SITE 1 AD4 6 TRP A 7 ALA A 53 THR A 99 ALA A 106 SITE 2 AD4 6 MPG A 302 MPG A 304 SITE 1 AD5 1 MPG A 303 SITE 1 AD6 4 MET A 1 TRP A 5 SER A 195 MPG A 306 SITE 1 AD7 12 TRP A 75 THR A 79 MET A 111 PHE A 131 SITE 2 AD7 12 SER A 134 THR A 135 PHE A 138 TRP A 175 SITE 3 AD7 12 TYR A 178 TRP A 182 ASP A 205 LYS A 209 SITE 1 AD8 7 ARG A 96 ASN A 97 THR A 99 PHE A 100 SITE 2 AD8 7 ARG A 148 MPG A 304 HOH A 404 SITE 1 AD9 4 GLY A 30 THR A 31 ARG A 32 TYR A 33 CRYST1 29.930 68.410 107.910 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.033411 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009267 0.00000