HEADER BIOSYNTHETIC PROTEIN 09-JUL-19 6KFY TITLE SUFS FROM BACILLUS SUBTILIS IN A RESTING STATE AT 1.96 ANGSTROM TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE DESULFURASE SUFS; COMPND 3 CHAIN: A; COMPND 4 EC: 2.8.1.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS (STRAIN 168); SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: SUFS, CSD, YURW, BSU32690; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS IRON, SULFUR, CYSTEINE DESULFURASE, RESTING STATE, BIOSYNTHETIC KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.NAKAMURA,Y.TAKAHASHI,T.FUJISHIRO REVDAT 4 22-NOV-23 6KFY 1 REMARK REVDAT 3 27-APR-22 6KFY 1 JRNL REVDAT 2 27-JAN-21 6KFY 1 JRNL REVDAT 1 15-JUL-20 6KFY 0 JRNL AUTH R.NAKAMURA,S.OGAWA,Y.TAKAHASHI,T.FUJISHIRO JRNL TITL CYCLOSERINE ENANTIOMERS INHIBIT PLP-DEPENDENT CYSTEINE JRNL TITL 2 DESULFURASE SUFS VIA DISTINCT MECHANISMS. JRNL REF FEBS J. 2022 JRNL REFN ISSN 1742-464X JRNL PMID 35395703 JRNL DOI 10.1111/FEBS.16455 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0670 - 4.9617 1.00 2920 153 0.1612 0.1654 REMARK 3 2 4.9617 - 3.9391 1.00 2810 148 0.1274 0.1612 REMARK 3 3 3.9391 - 3.4414 1.00 2756 145 0.1480 0.1797 REMARK 3 4 3.4414 - 3.1269 1.00 2752 145 0.1729 0.1854 REMARK 3 5 3.1269 - 2.9028 1.00 2750 145 0.1698 0.2177 REMARK 3 6 2.9028 - 2.7317 1.00 2735 144 0.1731 0.2017 REMARK 3 7 2.7317 - 2.5949 1.00 2725 143 0.1648 0.1972 REMARK 3 8 2.5949 - 2.4820 1.00 2727 144 0.1497 0.1761 REMARK 3 9 2.4820 - 2.3864 1.00 2727 143 0.1546 0.1822 REMARK 3 10 2.3864 - 2.3041 1.00 2717 143 0.1495 0.1729 REMARK 3 11 2.3041 - 2.2320 1.00 2719 144 0.1627 0.1902 REMARK 3 12 2.2320 - 2.1683 1.00 2704 142 0.1534 0.1825 REMARK 3 13 2.1683 - 2.1112 1.00 2708 142 0.1615 0.2014 REMARK 3 14 2.1112 - 2.0597 1.00 2690 142 0.1794 0.2162 REMARK 3 15 2.0597 - 2.0128 1.00 2709 143 0.1830 0.1959 REMARK 3 16 2.0128 - 1.9700 1.00 2694 141 0.2027 0.2514 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.7034 16.3342 -13.6661 REMARK 3 T TENSOR REMARK 3 T11: 0.3288 T22: 0.2456 REMARK 3 T33: 0.3103 T12: -0.0984 REMARK 3 T13: 0.0249 T23: -0.0694 REMARK 3 L TENSOR REMARK 3 L11: 5.2719 L22: 5.0205 REMARK 3 L33: 3.3341 L12: 0.0072 REMARK 3 L13: 0.0874 L23: -0.0563 REMARK 3 S TENSOR REMARK 3 S11: 0.1670 S12: -0.2125 S13: 0.2786 REMARK 3 S21: 0.2824 S22: -0.0647 S23: -0.5358 REMARK 3 S31: -0.5027 S32: 0.4256 S33: -0.1002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.9141 -4.7408 -12.2402 REMARK 3 T TENSOR REMARK 3 T11: 0.2668 T22: 0.1827 REMARK 3 T33: 0.2281 T12: -0.0614 REMARK 3 T13: 0.0008 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 2.9842 L22: 2.5972 REMARK 3 L33: 2.2470 L12: -1.3959 REMARK 3 L13: -0.9974 L23: 0.3636 REMARK 3 S TENSOR REMARK 3 S11: 0.1246 S12: -0.0381 S13: -0.3027 REMARK 3 S21: 0.2127 S22: -0.1738 S23: 0.4117 REMARK 3 S31: 0.2323 S32: -0.0723 S33: 0.0495 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): -59.9463 15.6925 -5.3905 REMARK 3 T TENSOR REMARK 3 T11: 0.4010 T22: 0.3815 REMARK 3 T33: 0.5018 T12: 0.0288 REMARK 3 T13: 0.1626 T23: -0.1163 REMARK 3 L TENSOR REMARK 3 L11: 2.6470 L22: 2.6514 REMARK 3 L33: 2.6035 L12: 0.2726 REMARK 3 L13: 0.0172 L23: -0.0511 REMARK 3 S TENSOR REMARK 3 S11: 0.1755 S12: -0.3555 S13: 0.3976 REMARK 3 S21: 0.5104 S22: -0.1816 S23: 0.7074 REMARK 3 S31: -0.3853 S32: -0.5190 S33: 0.0071 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.3547 -2.1028 -10.3231 REMARK 3 T TENSOR REMARK 3 T11: 0.2968 T22: 0.2406 REMARK 3 T33: 0.2659 T12: -0.0343 REMARK 3 T13: 0.0527 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 2.0305 L22: 2.2672 REMARK 3 L33: 2.2511 L12: 0.4978 REMARK 3 L13: 0.1501 L23: 0.7530 REMARK 3 S TENSOR REMARK 3 S11: 0.1564 S12: -0.2511 S13: -0.0168 REMARK 3 S21: 0.3689 S22: -0.2164 S23: 0.3830 REMARK 3 S31: 0.1445 S32: -0.2341 S33: 0.0585 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.3687 27.1248 -3.2698 REMARK 3 T TENSOR REMARK 3 T11: 0.5560 T22: 0.3885 REMARK 3 T33: 0.3654 T12: -0.0763 REMARK 3 T13: 0.0710 T23: -0.1046 REMARK 3 L TENSOR REMARK 3 L11: 1.8225 L22: 5.0957 REMARK 3 L33: 0.6088 L12: -0.2554 REMARK 3 L13: 0.4835 L23: 0.7544 REMARK 3 S TENSOR REMARK 3 S11: -0.0931 S12: -0.2261 S13: 0.2452 REMARK 3 S21: 0.5704 S22: -0.0041 S23: 0.0544 REMARK 3 S31: -0.3726 S32: -0.0585 S33: 0.0771 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 331 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.0045 27.3333 -16.8681 REMARK 3 T TENSOR REMARK 3 T11: 0.4966 T22: 0.2525 REMARK 3 T33: 0.3712 T12: -0.0221 REMARK 3 T13: 0.0351 T23: -0.0604 REMARK 3 L TENSOR REMARK 3 L11: 2.5209 L22: 1.7110 REMARK 3 L33: 1.4568 L12: 0.0634 REMARK 3 L13: 0.1435 L23: -0.0056 REMARK 3 S TENSOR REMARK 3 S11: -0.0806 S12: 0.0879 S13: 0.4048 REMARK 3 S21: -0.1418 S22: 0.0484 S23: 0.1606 REMARK 3 S31: -0.5405 S32: -0.0719 S33: 0.0426 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 385 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5132 36.7672 -16.8011 REMARK 3 T TENSOR REMARK 3 T11: 0.6919 T22: 0.3643 REMARK 3 T33: 0.6080 T12: -0.1373 REMARK 3 T13: 0.0486 T23: -0.0864 REMARK 3 L TENSOR REMARK 3 L11: 5.2089 L22: 6.5309 REMARK 3 L33: 8.4993 L12: -2.0825 REMARK 3 L13: 2.9050 L23: -3.6381 REMARK 3 S TENSOR REMARK 3 S11: -0.3232 S12: 0.2042 S13: 1.0715 REMARK 3 S21: 0.5171 S22: -0.2358 S23: -0.4957 REMARK 3 S31: -1.3878 S32: 0.1427 S33: 0.5380 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KFY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012903. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 43.067 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.062 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.19 REMARK 200 R MERGE FOR SHELL (I) : 0.75700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5ZS9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL, 50MM LITHIUM SULFATE, REMARK 280 50 % (V/V) PEG 200, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.06667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.13333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.13333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -43.06667 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 VAL A 407 REMARK 465 ASP A 408 REMARK 465 LEU A 409 REMARK 465 GLU A 410 REMARK 465 HIS A 411 REMARK 465 HIS A 412 REMARK 465 HIS A 413 REMARK 465 HIS A 414 REMARK 465 HIS A 415 REMARK 465 HIS A 416 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 248 CB GLU A 248 CG -0.120 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 14 73.69 -102.84 REMARK 500 TYR A 48 20.76 -146.05 REMARK 500 ILE A 116 -165.16 -123.56 REMARK 500 ILE A 125 -58.75 -127.26 REMARK 500 GLU A 252 -30.04 70.77 REMARK 500 ASP A 255 -62.43 -104.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 507 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5ZS9 RELATED DB: PDB DBREF 6KFY A 1 406 UNP O32164 SUFS_BACSU 1 406 SEQADV 6KFY MET A -2 UNP O32164 EXPRESSION TAG SEQADV 6KFY GLY A -1 UNP O32164 EXPRESSION TAG SEQADV 6KFY HIS A 0 UNP O32164 EXPRESSION TAG SEQADV 6KFY VAL A 407 UNP O32164 EXPRESSION TAG SEQADV 6KFY ASP A 408 UNP O32164 EXPRESSION TAG SEQADV 6KFY LEU A 409 UNP O32164 EXPRESSION TAG SEQADV 6KFY GLU A 410 UNP O32164 EXPRESSION TAG SEQADV 6KFY HIS A 411 UNP O32164 EXPRESSION TAG SEQADV 6KFY HIS A 412 UNP O32164 EXPRESSION TAG SEQADV 6KFY HIS A 413 UNP O32164 EXPRESSION TAG SEQADV 6KFY HIS A 414 UNP O32164 EXPRESSION TAG SEQADV 6KFY HIS A 415 UNP O32164 EXPRESSION TAG SEQADV 6KFY HIS A 416 UNP O32164 EXPRESSION TAG SEQRES 1 A 419 MET GLY HIS MET ASN ILE THR ASP ILE ARG GLU GLN PHE SEQRES 2 A 419 PRO ILE LEU HIS GLN GLN VAL ASN GLY HIS ASP LEU VAL SEQRES 3 A 419 TYR LEU ASP SER ALA ALA THR SER GLN LYS PRO ARG ALA SEQRES 4 A 419 VAL ILE GLU THR LEU ASP LYS TYR TYR ASN GLN TYR ASN SEQRES 5 A 419 SER ASN VAL HIS ARG GLY VAL HIS THR LEU GLY THR ARG SEQRES 6 A 419 ALA THR ASP GLY TYR GLU GLY ALA ARG GLU LYS VAL ARG SEQRES 7 A 419 LYS PHE ILE ASN ALA LYS SER MET ALA GLU ILE ILE PHE SEQRES 8 A 419 THR LYS GLY THR THR THR SER LEU ASN MET VAL ALA LEU SEQRES 9 A 419 SER TYR ALA ARG ALA ASN LEU LYS PRO GLY ASP GLU VAL SEQRES 10 A 419 VAL ILE THR TYR MET GLU HIS HIS ALA ASN ILE ILE PRO SEQRES 11 A 419 TRP GLN GLN ALA VAL LYS ALA THR GLY ALA THR LEU LYS SEQRES 12 A 419 TYR ILE PRO LEU GLN GLU ASP GLY THR ILE SER LEU GLU SEQRES 13 A 419 ASP VAL ARG GLU THR VAL THR SER ASN THR LYS ILE VAL SEQRES 14 A 419 ALA VAL SER HIS VAL SER ASN VAL LEU GLY THR VAL ASN SEQRES 15 A 419 PRO ILE LYS GLU MET ALA LYS ILE ALA HIS ASP ASN GLY SEQRES 16 A 419 ALA VAL ILE VAL VAL ASP GLY ALA GLN SER THR PRO HIS SEQRES 17 A 419 MET LYS ILE ASP VAL GLN ASP LEU ASP CYS ASP PHE PHE SEQRES 18 A 419 ALA LEU SER SER HIS LLP MET CYS GLY PRO THR GLY VAL SEQRES 19 A 419 GLY VAL LEU TYR GLY LYS LYS ALA LEU LEU GLU ASN MET SEQRES 20 A 419 GLU PRO ALA GLU PHE GLY GLY GLU MET ILE ASP PHE VAL SEQRES 21 A 419 GLY LEU TYR GLU SER THR TRP LYS GLU LEU PRO TRP LYS SEQRES 22 A 419 PHE GLU ALA GLY THR PRO ILE ILE ALA GLY ALA ILE GLY SEQRES 23 A 419 LEU GLY ALA ALA ILE ASP PHE LEU GLU GLU ILE GLY LEU SEQRES 24 A 419 ASP GLU ILE SER ARG HIS GLU HIS LYS LEU ALA ALA TYR SEQRES 25 A 419 ALA LEU GLU ARG PHE ARG GLN LEU ASP GLY VAL THR VAL SEQRES 26 A 419 TYR GLY PRO GLU GLU ARG ALA GLY LEU VAL THR PHE ASN SEQRES 27 A 419 LEU ASP ASP VAL HIS PRO HIS ASP VAL ALA THR VAL LEU SEQRES 28 A 419 ASP ALA GLU GLY ILE ALA VAL ARG ALA GLY HIS HIS CYS SEQRES 29 A 419 ALA GLN PRO LEU MET LYS TRP LEU ASP VAL THR ALA THR SEQRES 30 A 419 ALA ARG ALA SER PHE TYR LEU TYR ASN THR GLU GLU GLU SEQRES 31 A 419 ILE ASP LYS LEU VAL GLU ALA LEU GLN LYS THR LYS GLU SEQRES 32 A 419 TYR PHE THR ASN VAL PHE VAL ASP LEU GLU HIS HIS HIS SEQRES 33 A 419 HIS HIS HIS MODRES 6KFY LLP A 224 LYS MODIFIED RESIDUE HET LLP A 224 24 HET PGE A 501 10 HET PEG A 502 7 HET PEG A 503 7 HET PEG A 504 7 HET PEG A 505 7 HET PEG A 506 7 HET SO4 A 507 5 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP C14 H22 N3 O7 P FORMUL 2 PGE C6 H14 O4 FORMUL 3 PEG 5(C4 H10 O3) FORMUL 8 SO4 O4 S 2- FORMUL 9 HOH *224(H2 O) HELIX 1 AA1 ASN A 2 GLU A 8 1 7 HELIX 2 AA2 GLN A 9 HIS A 14 5 6 HELIX 3 AA3 PRO A 34 TYR A 48 1 15 HELIX 4 AA4 HIS A 57 ASN A 79 1 23 HELIX 5 AA5 SER A 82 ALA A 84 5 3 HELIX 6 AA6 GLY A 91 TYR A 103 1 13 HELIX 7 AA7 TYR A 103 LEU A 108 1 6 HELIX 8 AA8 HIS A 121 ASN A 124 5 4 HELIX 9 AA9 ILE A 125 GLY A 136 1 12 HELIX 10 AB1 SER A 151 VAL A 159 1 9 HELIX 11 AB2 PRO A 180 ASN A 191 1 12 HELIX 12 AB3 ASP A 209 ASP A 214 1 6 HELIX 13 AB4 HIS A 223 MET A 225 5 3 HELIX 14 AB5 LYS A 237 MET A 244 1 8 HELIX 15 AB6 PRO A 268 GLU A 272 5 5 HELIX 16 AB7 ILE A 277 GLY A 295 1 19 HELIX 17 AB8 GLY A 295 ARG A 315 1 21 HELIX 18 AB9 HIS A 340 GLU A 351 1 12 HELIX 19 AC1 ALA A 362 LEU A 369 1 8 HELIX 20 AC2 THR A 384 PHE A 406 1 23 SHEET 1 AA1 2 GLN A 16 VAL A 17 0 SHEET 2 AA1 2 HIS A 20 ASP A 21 -1 O HIS A 20 N VAL A 17 SHEET 1 AA2 2 VAL A 23 TYR A 24 0 SHEET 2 AA2 2 ILE A 353 ALA A 354 1 O ALA A 354 N VAL A 23 SHEET 1 AA3 7 ILE A 86 THR A 89 0 SHEET 2 AA3 7 GLY A 232 GLY A 236 -1 O GLY A 232 N THR A 89 SHEET 3 AA3 7 PHE A 217 SER A 221 -1 N PHE A 218 O TYR A 235 SHEET 4 AA3 7 VAL A 194 ASP A 198 1 N VAL A 197 O PHE A 217 SHEET 5 AA3 7 THR A 163 SER A 169 1 N VAL A 166 O VAL A 196 SHEET 6 AA3 7 GLU A 113 THR A 117 1 N VAL A 115 O ILE A 165 SHEET 7 AA3 7 THR A 138 ILE A 142 1 O ILE A 142 N ILE A 116 SHEET 1 AA4 2 ILE A 254 VAL A 257 0 SHEET 2 AA4 2 SER A 262 TRP A 264 -1 O THR A 263 N ASP A 255 SHEET 1 AA5 4 VAL A 320 VAL A 322 0 SHEET 2 AA5 4 LEU A 331 LEU A 336 -1 O ASN A 335 N THR A 321 SHEET 3 AA5 4 THR A 374 SER A 378 -1 O ALA A 375 N PHE A 334 SHEET 4 AA5 4 ARG A 356 GLY A 358 -1 N ARG A 356 O ARG A 376 LINK C HIS A 223 N LLP A 224 1555 1555 1.34 LINK C LLP A 224 N MET A 225 1555 1555 1.34 CISPEP 1 LEU A 267 PRO A 268 0 -3.33 SITE 1 AC1 7 HIS A 53 GLU A 252 LYS A 265 TRP A 269 SITE 2 AC1 7 HOH A 629 HOH A 735 HOH A 782 SITE 1 AC2 4 TYR A 103 ALA A 193 LEU A 240 HOH A 619 SITE 1 AC3 3 ASP A 5 GLN A 9 GLU A 293 SITE 1 AC4 5 THR A 4 ARG A 7 THR A 384 GLU A 386 SITE 2 AC4 5 HOH A 752 SITE 1 AC5 3 GLN A 15 ASN A 46 GLN A 47 SITE 1 AC6 2 VAL A 347 LYS A 397 SITE 1 AC7 6 ARG A 54 ARG A 356 GLY A 358 HIS A 359 SITE 2 AC7 6 HIS A 360 CYS A 361 CRYST1 92.900 92.900 129.200 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010764 0.006215 0.000000 0.00000 SCALE2 0.000000 0.012429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007740 0.00000