HEADER TRANSFERASE 12-JUL-19 6KGU
TITLE CRYSTAL STRUCTURE OF PENICILLIN BINDING PROTEIN 3 (PBP3) FROM
TITLE 2 MYCOBACTERIUM TUERCULOSIS, COMPLEXED WITH AZTREONAM
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN PBPB;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: PENICILLIN-BINDING PROTEIN 3,PBP3;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 /
SOURCE 3 H37RV);
SOURCE 4 ORGANISM_TAXID: 83332;
SOURCE 5 STRAIN: ATCC 25618 / H37RV;
SOURCE 6 GENE: PBPB, FTSI, PBP3, RV2163C;
SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1
KEYWDS PENICILLIN-BINDING PROTEIN, NATIVE FORM, MYCOBACTERIUM TUBERCULOSIS,
KEYWDS 2 AZTREONAM, TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR Z.K.LU,A.L.ZHANG,X.LIU,L.GUDDAT,H.T.YANG,Z.H.RAO
REVDAT 2 30-OCT-24 6KGU 1 LINK
REVDAT 1 11-MAR-20 6KGU 0
JRNL AUTH Z.LU,H.WANG,A.ZHANG,X.LIU,W.ZHOU,C.YANG,L.GUDDAT,H.YANG,
JRNL AUTH 2 C.J.SCHOFIELD,Z.RAO
JRNL TITL STRUCTURES OFMYCOBACTERIUM TUBERCULOSISPENICILLIN-BINDING
JRNL TITL 2 PROTEIN 3 IN COMPLEX WITH FIVEBETA-LACTAM ANTIBIOTICS REVEAL
JRNL TITL 3 MECHANISM OF INACTIVATION.
JRNL REF MOL.PHARMACOL. V. 97 287 2020
JRNL REFN ESSN 1521-0111
JRNL PMID 32086254
JRNL DOI 10.1124/MOL.119.118042
REMARK 2
REMARK 2 RESOLUTION. 2.11 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.10.1_2155
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.94
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3
REMARK 3 NUMBER OF REFLECTIONS : 38522
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.190
REMARK 3 R VALUE (WORKING SET) : 0.188
REMARK 3 FREE R VALUE : 0.230
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950
REMARK 3 FREE R VALUE TEST SET COUNT : 1905
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 44.9370 - 5.0741 0.99 2704 144 0.2186 0.2512
REMARK 3 2 5.0741 - 4.0283 0.99 2629 144 0.1656 0.1917
REMARK 3 3 4.0283 - 3.5193 0.99 2667 137 0.1734 0.2077
REMARK 3 4 3.5193 - 3.1976 0.98 2614 135 0.1752 0.2310
REMARK 3 5 3.1976 - 2.9685 0.99 2646 122 0.1855 0.2284
REMARK 3 6 2.9685 - 2.7935 0.99 2599 146 0.1873 0.2455
REMARK 3 7 2.7935 - 2.6536 0.98 2595 166 0.1816 0.2099
REMARK 3 8 2.6536 - 2.5381 0.99 2648 130 0.1870 0.2595
REMARK 3 9 2.5381 - 2.4404 0.98 2572 125 0.1927 0.2748
REMARK 3 10 2.4404 - 2.3562 0.98 2625 130 0.1965 0.2551
REMARK 3 11 2.3562 - 2.2825 0.98 2592 127 0.1940 0.2364
REMARK 3 12 2.2825 - 2.2173 0.98 2548 145 0.1982 0.2633
REMARK 3 13 2.2173 - 2.1589 0.98 2608 137 0.2058 0.2444
REMARK 3 14 2.1589 - 2.1062 0.96 2570 117 0.2305 0.2819
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.290
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.50
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.018 3473
REMARK 3 ANGLE : 0.863 4725
REMARK 3 CHIRALITY : 0.055 526
REMARK 3 PLANARITY : 0.005 645
REMARK 3 DIHEDRAL : 11.481 2081
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6KGU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JUL-19.
REMARK 100 THE DEPOSITION ID IS D_1300012962.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 13-SEP-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.4
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SSRF
REMARK 200 BEAMLINE : BL19U1
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9776
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38528
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 44.940
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0
REMARK 200 DATA REDUNDANCY : 7.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.4300
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.13
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, COCL2, MGCL2, HEPES, PH 7.4,
REMARK 280 EVAPORATION, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.45000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.32000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.45000
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.32000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 850 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 18220 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 118
REMARK 465 PRO A 119
REMARK 465 LEU A 120
REMARK 465 GLY A 121
REMARK 465 SER A 122
REMARK 465 GLY A 123
REMARK 465 GLN A 124
REMARK 465 LEU A 125
REMARK 465 LYS A 126
REMARK 465 VAL A 127
REMARK 465 THR A 128
REMARK 465 LEU A 155
REMARK 465 THR A 156
REMARK 465 PHE A 157
REMARK 465 GLN A 158
REMARK 465 PRO A 159
REMARK 465 LYS A 160
REMARK 465 ARG A 161
REMARK 465 ILE A 162
REMARK 465 ARG A 163
REMARK 465 ARG A 164
REMARK 465 GLN A 165
REMARK 465 LEU A 166
REMARK 465 GLU A 167
REMARK 465 GLU A 168
REMARK 465 ALA A 169
REMARK 465 ARG A 170
REMARK 465 LYS A 171
REMARK 465 LYS A 172
REMARK 465 THR A 173
REMARK 465 SER A 174
REMARK 465 ALA A 175
REMARK 465 ALA A 176
REMARK 465 PRO A 177
REMARK 465 ASP A 178
REMARK 465 PRO A 179
REMARK 465 GLN A 180
REMARK 465 GLN A 181
REMARK 465 ARG A 182
REMARK 465 LEU A 183
REMARK 465 ARG A 184
REMARK 465 ASP A 185
REMARK 465 ILE A 186
REMARK 465 ALA A 187
REMARK 465 GLN A 188
REMARK 465 GLU A 189
REMARK 465 VAL A 190
REMARK 465 ALA A 191
REMARK 465 GLY A 192
REMARK 465 LYS A 193
REMARK 465 LEU A 194
REMARK 465 ASN A 195
REMARK 465 ASN A 196
REMARK 465 LYS A 197
REMARK 465 PRO A 198
REMARK 465 ASP A 199
REMARK 465 ALA A 200
REMARK 465 ALA A 201
REMARK 465 ALA A 202
REMARK 465 VAL A 203
REMARK 465 LEU A 204
REMARK 465 LYS A 205
REMARK 465 LYS A 206
REMARK 465 LEU A 207
REMARK 465 GLN A 208
REMARK 465 SER A 209
REMARK 465 ASP A 210
REMARK 465 GLU A 211
REMARK 465 THR A 212
REMARK 465 PHE A 213
REMARK 465 VAL A 214
REMARK 465 TYR A 215
REMARK 465 LEU A 216
REMARK 465 ALA A 217
REMARK 465 ARG A 218
REMARK 465 ALA A 219
REMARK 465 VAL A 220
REMARK 465 ASP A 221
REMARK 465 PRO A 222
REMARK 465 ALA A 223
REMARK 465 VAL A 224
REMARK 465 ALA A 225
REMARK 465 SER A 226
REMARK 465 ALA A 227
REMARK 465 ILE A 228
REMARK 465 CYS A 229
REMARK 465 ALA A 230
REMARK 465 LYS A 231
REMARK 465 TYR A 232
REMARK 465 PRO A 233
REMARK 465 GLU A 234
REMARK 465 VAL A 235
REMARK 465 GLY A 236
REMARK 465 THR A 284
REMARK 465 TYR A 285
REMARK 465 ASP A 286
REMARK 465 ARG A 287
REMARK 465 GLY A 288
REMARK 465 SER A 289
REMARK 465 ASP A 290
REMARK 465 GLY A 291
REMARK 465 VAL A 292
REMARK 465 VAL A 293
REMARK 465 ILE A 294
REMARK 465 PRO A 295
REMARK 465 GLY A 296
REMARK 465 SER A 297
REMARK 465 TYR A 298
REMARK 465 ARG A 299
REMARK 465 ASN A 300
REMARK 465 SER A 667
REMARK 465 PRO A 668
REMARK 465 ASP A 669
REMARK 465 PRO A 670
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 301 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 CO CO A 704 O HOH A 897 1.54
REMARK 500 O HOH A 884 O HOH A 986 2.12
REMARK 500 O HOH A 973 O HOH A 1001 2.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS
REMARK 500
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375
REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.
REMARK 500
REMARK 500 DISTANCE CUTOFF:
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE
REMARK 500 O HOH A 844 O HOH A 949 4545 2.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A 519 41.09 -92.97
REMARK 500 ASP A 609 32.90 -145.46
REMARK 500 HIS A 645 37.22 -151.07
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A1024 DISTANCE = 8.02 ANGSTROMS
REMARK 525 HOH A1025 DISTANCE = 9.08 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CO A 704 CO
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 263 NE2
REMARK 620 2 HIS A 302 NE2 122.2
REMARK 620 3 HOH A 803 O 122.5 9.9
REMARK 620 4 HOH A 903 O 129.1 7.9 8.7
REMARK 620 5 HOH A 999 O 125.0 8.6 3.1 5.6
REMARK 620 N 1 2 3 4
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CO A 703 CO
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 645 NE2
REMARK 620 2 HOH A1007 O 110.5
REMARK 620 N 1
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 CO A 702 CO
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HIS A 652 NE2
REMARK 620 2 HIS A 652 NE2 0.0
REMARK 620 3 HOH A 920 O 83.1 83.1
REMARK 620 4 HOH A 920 O 88.3 88.3 42.8
REMARK 620 5 HOH A 964 O 96.3 96.3 49.5 90.6
REMARK 620 6 HOH A 964 O 81.3 81.3 81.2 39.9 130.3
REMARK 620 7 HOH A 993 O 97.2 97.2 117.9 159.3 69.0 160.7
REMARK 620 8 HOH A 993 O 86.7 86.7 131.6 89.9 177.0 50.5 110.3
REMARK 620 9 HOH A 996 O 96.5 96.5 155.3 161.6 106.4 123.3 37.5 72.8
REMARK 620 N 1 2 3 4 5 6 7 8
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue AZR A 701
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 702
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 703
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 704
DBREF 6KGU A 123 679 UNP L0T911 PBPB_MYCTU 123 679
SEQADV 6KGU GLY A 118 UNP L0T911 EXPRESSION TAG
SEQADV 6KGU PRO A 119 UNP L0T911 EXPRESSION TAG
SEQADV 6KGU LEU A 120 UNP L0T911 EXPRESSION TAG
SEQADV 6KGU GLY A 121 UNP L0T911 EXPRESSION TAG
SEQADV 6KGU SER A 122 UNP L0T911 EXPRESSION TAG
SEQRES 1 A 562 GLY PRO LEU GLY SER GLY GLN LEU LYS VAL THR ASP VAL
SEQRES 2 A 562 GLN PRO ALA ALA ARG GLY SER ILE VAL ASP ARG ASN ASN
SEQRES 3 A 562 ASP ARG LEU ALA PHE THR ILE GLU ALA ARG ALA LEU THR
SEQRES 4 A 562 PHE GLN PRO LYS ARG ILE ARG ARG GLN LEU GLU GLU ALA
SEQRES 5 A 562 ARG LYS LYS THR SER ALA ALA PRO ASP PRO GLN GLN ARG
SEQRES 6 A 562 LEU ARG ASP ILE ALA GLN GLU VAL ALA GLY LYS LEU ASN
SEQRES 7 A 562 ASN LYS PRO ASP ALA ALA ALA VAL LEU LYS LYS LEU GLN
SEQRES 8 A 562 SER ASP GLU THR PHE VAL TYR LEU ALA ARG ALA VAL ASP
SEQRES 9 A 562 PRO ALA VAL ALA SER ALA ILE CYS ALA LYS TYR PRO GLU
SEQRES 10 A 562 VAL GLY ALA GLU ARG GLN ASP LEU ARG GLN TYR PRO GLY
SEQRES 11 A 562 GLY SER LEU ALA ALA ASN VAL VAL GLY GLY ILE ASP TRP
SEQRES 12 A 562 ASP GLY HIS GLY LEU LEU GLY LEU GLU ASP SER LEU ASP
SEQRES 13 A 562 ALA VAL LEU ALA GLY THR ASP GLY SER VAL THR TYR ASP
SEQRES 14 A 562 ARG GLY SER ASP GLY VAL VAL ILE PRO GLY SER TYR ARG
SEQRES 15 A 562 ASN ARG HIS LYS ALA VAL HIS GLY SER THR VAL VAL LEU
SEQRES 16 A 562 THR LEU ASP ASN ASP ILE GLN PHE TYR VAL GLN GLN GLN
SEQRES 17 A 562 VAL GLN GLN ALA LYS ASN LEU SER GLY ALA HIS ASN VAL
SEQRES 18 A 562 SER ALA VAL VAL LEU ASP ALA LYS THR GLY GLU VAL LEU
SEQRES 19 A 562 ALA MET ALA ASN ASP ASN THR PHE ASP PRO SER GLN ASP
SEQRES 20 A 562 ILE GLY ARG GLN GLY ASP LYS GLN LEU GLY ASN PRO ALA
SEQRES 21 A 562 VAL SER SER PRO PHE GLU PRO GLY SER VAL ASN LYS ILE
SEQRES 22 A 562 VAL ALA ALA SER ALA VAL ILE GLU HIS GLY LEU SER SER
SEQRES 23 A 562 PRO ASP GLU VAL LEU GLN VAL PRO GLY SER ILE GLN MET
SEQRES 24 A 562 GLY GLY VAL THR VAL HIS ASP ALA TRP GLU HIS GLY VAL
SEQRES 25 A 562 MET PRO TYR THR THR THR GLY VAL PHE GLY LYS SER SER
SEQRES 26 A 562 ASN VAL GLY THR LEU MET LEU SER GLN ARG VAL GLY PRO
SEQRES 27 A 562 GLU ARG TYR TYR ASP MET LEU ARG LYS PHE GLY LEU GLY
SEQRES 28 A 562 GLN ARG THR GLY VAL GLY LEU PRO GLY GLU SER ALA GLY
SEQRES 29 A 562 LEU VAL PRO PRO ILE ASP GLN TRP SER GLY SER THR PHE
SEQRES 30 A 562 ALA ASN LEU PRO ILE GLY GLN GLY LEU SER MET THR LEU
SEQRES 31 A 562 LEU GLN MET THR GLY MET TYR GLN ALA ILE ALA ASN ASP
SEQRES 32 A 562 GLY VAL ARG VAL PRO PRO ARG ILE ILE LYS ALA THR VAL
SEQRES 33 A 562 ALA PRO ASP GLY SER ARG THR GLU GLU PRO ARG PRO ASP
SEQRES 34 A 562 ASP ILE ARG VAL VAL SER ALA GLN THR ALA GLN THR VAL
SEQRES 35 A 562 ARG GLN MET LEU ARG ALA VAL VAL GLN ARG ASP PRO MET
SEQRES 36 A 562 GLY TYR GLN GLN GLY THR GLY PRO THR ALA GLY VAL PRO
SEQRES 37 A 562 GLY TYR GLN MET ALA GLY LYS THR GLY THR ALA GLN GLN
SEQRES 38 A 562 ILE ASN PRO GLY CYS GLY CYS TYR PHE ASP ASP VAL TYR
SEQRES 39 A 562 TRP ILE THR PHE ALA GLY ILE ALA THR ALA ASP ASN PRO
SEQRES 40 A 562 ARG TYR VAL ILE GLY ILE MET LEU ASP ASN PRO ALA ARG
SEQRES 41 A 562 ASN SER ASP GLY ALA PRO GLY HIS SER ALA ALA PRO LEU
SEQRES 42 A 562 PHE HIS ASN ILE ALA GLY TRP LEU MET GLN ARG GLU ASN
SEQRES 43 A 562 VAL PRO LEU SER PRO ASP PRO GLY PRO PRO LEU VAL LEU
SEQRES 44 A 562 GLN ALA THR
HET AZR A 701 28
HET CO A 702 1
HET CO A 703 1
HET CO A 704 1
HETNAM AZR 2-({[(1Z)-1-(2-AMINO-1,3-THIAZOL-4-YL)-2-OXO-2-{[(2S,
HETNAM 2 AZR 3S)-1-OXO-3-(SULFOAMINO)BUTAN-2-
HETNAM 3 AZR YL]AMINO}ETHYLIDENE]AMINO}OXY)-2-METHYLPROPANOIC ACID
HETNAM CO COBALT (II) ION
HETSYN AZR AZTREONAM, OPEN FORM
FORMUL 2 AZR C13 H19 N5 O8 S2
FORMUL 3 CO 3(CO 2+)
FORMUL 6 HOH *225(H2 O)
HELIX 1 AA1 ALA A 251 GLY A 256 1 6
HELIX 2 AA2 GLY A 267 LEU A 272 1 6
HELIX 3 AA3 LEU A 272 GLY A 278 1 7
HELIX 4 AA4 ASP A 315 GLY A 334 1 20
HELIX 5 AA5 ASP A 364 GLN A 368 5 5
HELIX 6 AA6 ASN A 375 SER A 380 1 6
HELIX 7 AA7 PRO A 384 VAL A 387 5 4
HELIX 8 AA8 ASN A 388 HIS A 399 1 12
HELIX 9 AA9 THR A 433 SER A 441 1 9
HELIX 10 AB1 SER A 442 GLY A 454 1 13
HELIX 11 AB2 GLY A 454 PHE A 465 1 12
HELIX 12 AB3 PRO A 485 TRP A 489 5 5
HELIX 13 AB4 SER A 492 GLY A 500 5 9
HELIX 14 AB5 THR A 506 ASN A 519 1 14
HELIX 15 AB6 SER A 552 LEU A 563 1 12
HELIX 16 AB7 ARG A 564 GLN A 568 5 5
HELIX 17 AB8 GLY A 579 GLY A 583 5 5
HELIX 18 AB9 ALA A 647 GLU A 662 1 16
SHEET 1 AA1 2 VAL A 130 GLN A 131 0
SHEET 2 AA1 2 GLY A 281 SER A 282 -1 O GLY A 281 N GLN A 131
SHEET 1 AA2 6 ARG A 239 GLN A 244 0
SHEET 2 AA2 6 ARG A 145 ARG A 153 -1 N ILE A 150 O LEU A 242
SHEET 3 AA2 6 ILE A 138 VAL A 139 -1 N ILE A 138 O LEU A 146
SHEET 4 AA2 6 THR A 309 LEU A 312 1 O LEU A 312 N VAL A 139
SHEET 5 AA2 6 ILE A 529 VAL A 533 -1 O VAL A 533 N THR A 309
SHEET 6 AA2 6 ARG A 539 GLU A 541 -1 O THR A 540 N THR A 532
SHEET 1 AA3 2 GLY A 257 ILE A 258 0
SHEET 2 AA3 2 GLY A 264 LEU A 266 -1 O LEU A 265 N GLY A 257
SHEET 1 AA4 5 VAL A 350 ASN A 355 0
SHEET 2 AA4 5 ASN A 337 ASP A 344 -1 N VAL A 342 O ALA A 352
SHEET 3 AA4 5 TYR A 626 ASP A 633 -1 O VAL A 627 N LEU A 343
SHEET 4 AA4 5 TYR A 606C ALA A 619 -1 N ILE A 613 O LEU A 632
SHEET 5 AA4 5 ALA A 590 ILE A 599 -1 N GLN A 598 O PHE A 607
SHEET 1 AA5 2 SER A 413 MET A 416 0
SHEET 2 AA5 2 VAL A 419 HIS A 422 -1 O VAL A 419 N MET A 416
SHEET 1 AA6 2 VAL A 522 ARG A 523 0
SHEET 2 AA6 2 ILE A 548 ARG A 549 -1 O ILE A 548 N ARG A 523
SSBOND 1 CYS A 603 CYS A 605 1555 1555 2.05
LINK OG SER A 386 C20 AZR A 701 1555 1555 1.49
LINK NE2 HIS A 263 CO CO A 704 1555 2656 2.28
LINK NE2 HIS A 302 CO CO A 704 1555 1555 2.03
LINK NE2 HIS A 645 CO CO A 703 1555 1555 2.26
LINK NE2 HIS A 652 CO CO A 702 1555 1555 2.15
LINK NE2 HIS A 652 CO CO A 702 1555 2655 2.22
LINK CO CO A 702 O HOH A 920 1555 1555 2.15
LINK CO CO A 702 O HOH A 920 1555 2655 2.42
LINK CO CO A 702 O HOH A 964 1555 1555 1.85
LINK CO CO A 702 O HOH A 964 1555 2655 2.54
LINK CO CO A 702 O HOH A 993 1555 1555 2.12
LINK CO CO A 702 O HOH A 993 1555 2655 2.75
LINK CO CO A 702 O HOH A 996 1555 1555 2.19
LINK CO CO A 702 O HOH A 996 1555 2655 2.46
LINK CO CO A 703 O HOH A1007 1555 1555 2.51
LINK CO CO A 704 O HOH A 803 1555 2656 2.36
LINK CO CO A 704 O HOH A 903 1555 1555 1.91
LINK CO CO A 704 O HOH A 999 1555 2656 2.15
CISPEP 1 ALA A 619 THR A 620 0 -7.53
SITE 1 AC1 14 GLU A 383 SER A 386 ALA A 424 SER A 441
SITE 2 AC1 14 ASN A 443 GLN A 501 LYS A 592 THR A 593
SITE 3 AC1 14 GLY A 594 THR A 595 ALA A 596 GLN A 597
SITE 4 AC1 14 TYR A 606C HOH A 894
SITE 1 AC2 5 HIS A 652 HOH A 920 HOH A 964 HOH A 993
SITE 2 AC2 5 HOH A 996
SITE 1 AC3 2 HIS A 645 HOH A1007
SITE 1 AC4 6 HIS A 263 HIS A 302 HOH A 803 HOH A 897
SITE 2 AC4 6 HOH A 903 HOH A 999
CRYST1 96.900 84.640 90.220 90.00 111.95 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010320 0.000000 0.004160 0.00000
SCALE2 0.000000 0.011815 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011951 0.00000