HEADER TRANSFERASE 15-JUL-19 6KHF TITLE CRYSTAL STRUCTURE OF CLK3 IN COMPLEX WITH CX-4945 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY PROTEIN KINASE CLK3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CDC-LIKE KINASE 3; COMPND 5 EC: 2.7.12.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CLK3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CDC2-LIKE KINASE, CASEIN KINASE, CX-4945, ALTERNATIVE SPLICING, KEYWDS 2 SPLICING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.Y.LEE,J.S.YUN,H.JIN,J.H.CHANG REVDAT 2 22-NOV-23 6KHF 1 REMARK REVDAT 1 02-OCT-19 6KHF 0 JRNL AUTH J.Y.LEE,J.S.YUN,W.K.KIM,H.S.CHUN,H.JIN,S.CHO,J.H.CHANG JRNL TITL STRUCTURAL BASIS FOR THE SELECTIVE INHIBITION OF CDC2-LIKE JRNL TITL 2 KINASES BY CX-4945. JRNL REF BIOMED RES INT V.2019 25068 2019 JRNL REFN ESSN 2314-6141 JRNL PMID 31531359 JRNL DOI 10.1155/2019/6125068 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 17642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.3590 - 6.0799 1.00 1316 146 0.1967 0.2529 REMARK 3 2 6.0799 - 4.8382 1.00 1262 140 0.2056 0.3081 REMARK 3 3 4.8382 - 4.2303 1.00 1241 139 0.1681 0.2536 REMARK 3 4 4.2303 - 3.8451 1.00 1225 136 0.1879 0.2461 REMARK 3 5 3.8451 - 3.5704 1.00 1242 138 0.2041 0.2573 REMARK 3 6 3.5704 - 3.3605 1.00 1219 135 0.2186 0.2671 REMARK 3 7 3.3605 - 3.1926 1.00 1223 135 0.2323 0.2632 REMARK 3 8 3.1926 - 3.0539 1.00 1214 135 0.2531 0.3017 REMARK 3 9 3.0539 - 2.9365 1.00 1194 133 0.2691 0.3445 REMARK 3 10 2.9365 - 2.8353 1.00 1223 136 0.2956 0.3414 REMARK 3 11 2.8353 - 2.7468 1.00 1214 135 0.2821 0.3398 REMARK 3 12 2.7468 - 2.6684 1.00 1215 135 0.3296 0.3221 REMARK 3 13 2.6684 - 2.5982 0.91 1090 121 0.3470 0.3920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2786 REMARK 3 ANGLE : 1.379 3761 REMARK 3 CHIRALITY : 0.056 394 REMARK 3 PLANARITY : 0.007 482 REMARK 3 DIHEDRAL : 17.158 1030 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KHF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.598 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.67200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2EU9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% (V/V) TACSIMATE PH 7.0, 0.025% REMARK 280 DICHLOROMETHANE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.90950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.48900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.14200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.90950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.48900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.14200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.90950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.48900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.14200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.90950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.48900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.14200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1127 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 CYS A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 6 REMARK 465 TYR A 7 REMARK 465 ARG A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 GLU A 11 REMARK 465 PRO A 12 REMARK 465 ASP A 13 REMARK 465 PRO A 14 REMARK 465 TYR A 15 REMARK 465 LEU A 16 REMARK 465 SER A 17 REMARK 465 TYR A 18 REMARK 465 ARG A 19 REMARK 465 TRP A 20 REMARK 465 LYS A 21 REMARK 465 ARG A 22 REMARK 465 ARG A 23 REMARK 465 ARG A 24 REMARK 465 SER A 25 REMARK 465 TYR A 26 REMARK 465 SER A 27 REMARK 465 ARG A 28 REMARK 465 GLU A 29 REMARK 465 HIS A 30 REMARK 465 GLU A 31 REMARK 465 GLY A 32 REMARK 465 ARG A 33 REMARK 465 LEU A 34 REMARK 465 ARG A 35 REMARK 465 TYR A 36 REMARK 465 PRO A 37 REMARK 465 SER A 38 REMARK 465 ARG A 39 REMARK 465 ARG A 40 REMARK 465 GLU A 41 REMARK 465 PRO A 42 REMARK 465 PRO A 43 REMARK 465 PRO A 44 REMARK 465 ARG A 45 REMARK 465 ARG A 46 REMARK 465 SER A 47 REMARK 465 ARG A 48 REMARK 465 SER A 49 REMARK 465 ARG A 50 REMARK 465 SER A 51 REMARK 465 HIS A 52 REMARK 465 ASP A 53 REMARK 465 ARG A 54 REMARK 465 LEU A 55 REMARK 465 PRO A 56 REMARK 465 TYR A 57 REMARK 465 GLN A 58 REMARK 465 ARG A 59 REMARK 465 ARG A 60 REMARK 465 TYR A 61 REMARK 465 ARG A 62 REMARK 465 GLU A 63 REMARK 465 ARG A 64 REMARK 465 ARG A 65 REMARK 465 ASP A 66 REMARK 465 SER A 67 REMARK 465 ASP A 68 REMARK 465 THR A 69 REMARK 465 TYR A 70 REMARK 465 ARG A 71 REMARK 465 CYS A 72 REMARK 465 GLU A 73 REMARK 465 GLU A 74 REMARK 465 ARG A 75 REMARK 465 SER A 76 REMARK 465 PRO A 77 REMARK 465 SER A 78 REMARK 465 PHE A 79 REMARK 465 GLY A 80 REMARK 465 GLU A 81 REMARK 465 ASP A 82 REMARK 465 TYR A 83 REMARK 465 TYR A 84 REMARK 465 GLY A 85 REMARK 465 PRO A 86 REMARK 465 SER A 87 REMARK 465 ARG A 88 REMARK 465 SER A 89 REMARK 465 ARG A 90 REMARK 465 HIS A 91 REMARK 465 ARG A 92 REMARK 465 ARG A 93 REMARK 465 ARG A 94 REMARK 465 SER A 95 REMARK 465 ARG A 96 REMARK 465 GLU A 97 REMARK 465 ARG A 98 REMARK 465 GLY A 99 REMARK 465 PRO A 100 REMARK 465 TYR A 101 REMARK 465 ARG A 102 REMARK 465 THR A 103 REMARK 465 ARG A 104 REMARK 465 LYS A 105 REMARK 465 HIS A 106 REMARK 465 ALA A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 CYS A 110 REMARK 465 HIS A 111 REMARK 465 LYS A 112 REMARK 465 ARG A 113 REMARK 465 ARG A 114 REMARK 465 THR A 115 REMARK 465 ARG A 116 REMARK 465 SER A 117 REMARK 465 CYS A 118 REMARK 465 SER A 119 REMARK 465 SER A 120 REMARK 465 ALA A 121 REMARK 465 SER A 122 REMARK 465 SER A 123 REMARK 465 ARG A 124 REMARK 465 SER A 125 REMARK 465 GLN A 126 REMARK 465 GLN A 127 REMARK 465 SER A 128 REMARK 465 SER A 129 REMARK 465 LYS A 130 REMARK 465 ARG A 131 REMARK 465 SER A 132 REMARK 465 SER A 133 REMARK 465 ARG A 134 REMARK 465 SER A 135 REMARK 465 VAL A 136 REMARK 465 GLU A 137 REMARK 465 ASP A 138 REMARK 465 ASP A 139 REMARK 465 LYS A 140 REMARK 465 GLU A 141 REMARK 465 GLU A 297 REMARK 465 THR A 298 REMARK 465 LEU A 299 REMARK 465 TYR A 300 REMARK 465 ASN A 301 REMARK 465 GLU A 302 REMARK 465 HIS A 303 REMARK 465 LYS A 304 REMARK 465 SER A 305 REMARK 465 CYS A 306 REMARK 465 GLU A 307 REMARK 465 GLU A 308 REMARK 465 LYS A 309 REMARK 465 PHE A 482 REMARK 465 HIS A 483 REMARK 465 THR A 484 REMARK 465 SER A 485 REMARK 465 ARG A 486 REMARK 465 ASN A 487 REMARK 465 PRO A 488 REMARK 465 SER A 489 REMARK 465 ARG A 490 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 176 CG ND1 CD2 CE1 NE2 REMARK 470 HIS A 231 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 296 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 201 O HOH A 1101 1.89 REMARK 500 NZ LYS A 285 O HOH A 1102 2.03 REMARK 500 O THR A 166 NH1 ARG A 189 2.03 REMARK 500 OG1 THR A 337 O HOH A 1102 2.13 REMARK 500 OG1 THR A 337 O HOH A 1103 2.15 REMARK 500 OG SER A 310 O HOH A 1104 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 143 -141.48 -95.03 REMARK 500 GLN A 153 15.66 44.96 REMARK 500 LYS A 180 1.01 80.61 REMARK 500 ARG A 189 174.24 -58.51 REMARK 500 ASP A 212 69.72 -55.19 REMARK 500 LYS A 213 -73.89 -49.63 REMARK 500 ASN A 227 66.93 -103.50 REMARK 500 ASP A 283 44.15 -145.92 REMARK 500 LYS A 285 142.60 176.07 REMARK 500 SER A 294 48.26 -104.52 REMARK 500 VAL A 335 -24.13 -140.37 REMARK 500 ALA A 352 -137.62 -155.62 REMARK 500 SER A 439 -176.60 -62.67 REMARK 500 LEU A 468 41.42 -107.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3NG A 1000 DBREF 6KHF A 1 490 UNP P49761 CLK3_HUMAN 1 490 SEQADV 6KHF ASP A 155 UNP P49761 ARG 155 CONFLICT SEQRES 1 A 490 MET HIS HIS CYS LYS ARG TYR ARG SER PRO GLU PRO ASP SEQRES 2 A 490 PRO TYR LEU SER TYR ARG TRP LYS ARG ARG ARG SER TYR SEQRES 3 A 490 SER ARG GLU HIS GLU GLY ARG LEU ARG TYR PRO SER ARG SEQRES 4 A 490 ARG GLU PRO PRO PRO ARG ARG SER ARG SER ARG SER HIS SEQRES 5 A 490 ASP ARG LEU PRO TYR GLN ARG ARG TYR ARG GLU ARG ARG SEQRES 6 A 490 ASP SER ASP THR TYR ARG CYS GLU GLU ARG SER PRO SER SEQRES 7 A 490 PHE GLY GLU ASP TYR TYR GLY PRO SER ARG SER ARG HIS SEQRES 8 A 490 ARG ARG ARG SER ARG GLU ARG GLY PRO TYR ARG THR ARG SEQRES 9 A 490 LYS HIS ALA HIS HIS CYS HIS LYS ARG ARG THR ARG SER SEQRES 10 A 490 CYS SER SER ALA SER SER ARG SER GLN GLN SER SER LYS SEQRES 11 A 490 ARG SER SER ARG SER VAL GLU ASP ASP LYS GLU GLY HIS SEQRES 12 A 490 LEU VAL CYS ARG ILE GLY ASP TRP LEU GLN GLU ASP TYR SEQRES 13 A 490 GLU ILE VAL GLY ASN LEU GLY GLU GLY THR PHE GLY LYS SEQRES 14 A 490 VAL VAL GLU CYS LEU ASP HIS ALA ARG GLY LYS SER GLN SEQRES 15 A 490 VAL ALA LEU LYS ILE ILE ARG ASN VAL GLY LYS TYR ARG SEQRES 16 A 490 GLU ALA ALA ARG LEU GLU ILE ASN VAL LEU LYS LYS ILE SEQRES 17 A 490 LYS GLU LYS ASP LYS GLU ASN LYS PHE LEU CYS VAL LEU SEQRES 18 A 490 MET SER ASP TRP PHE ASN PHE HIS GLY HIS MET CYS ILE SEQRES 19 A 490 ALA PHE GLU LEU LEU GLY LYS ASN THR PHE GLU PHE LEU SEQRES 20 A 490 LYS GLU ASN ASN PHE GLN PRO TYR PRO LEU PRO HIS VAL SEQRES 21 A 490 ARG HIS MET ALA TYR GLN LEU CYS HIS ALA LEU ARG PHE SEQRES 22 A 490 LEU HIS GLU ASN GLN LEU THR HIS THR ASP LEU LYS PRO SEQRES 23 A 490 GLU ASN ILE LEU PHE VAL ASN SER GLU PHE GLU THR LEU SEQRES 24 A 490 TYR ASN GLU HIS LYS SER CYS GLU GLU LYS SER VAL LYS SEQRES 25 A 490 ASN THR SER ILE ARG VAL ALA ASP PHE GLY SER ALA THR SEQRES 26 A 490 PHE ASP HIS GLU HIS HIS THR THR ILE VAL ALA THR ARG SEQRES 27 A 490 HIS TYR ARG PRO PRO GLU VAL ILE LEU GLU LEU GLY TRP SEQRES 28 A 490 ALA GLN PRO CYS ASP VAL TRP SER ILE GLY CYS ILE LEU SEQRES 29 A 490 PHE GLU TYR TYR ARG GLY PHE THR LEU PHE GLN THR HIS SEQRES 30 A 490 GLU ASN ARG GLU HIS LEU VAL MET MET GLU LYS ILE LEU SEQRES 31 A 490 GLY PRO ILE PRO SER HIS MET ILE HIS ARG THR ARG LYS SEQRES 32 A 490 GLN LYS TYR PHE TYR LYS GLY GLY LEU VAL TRP ASP GLU SEQRES 33 A 490 ASN SER SER ASP GLY ARG TYR VAL LYS GLU ASN CYS LYS SEQRES 34 A 490 PRO LEU LYS SER TYR MET LEU GLN ASP SER LEU GLU HIS SEQRES 35 A 490 VAL GLN LEU PHE ASP LEU MET ARG ARG MET LEU GLU PHE SEQRES 36 A 490 ASP PRO ALA GLN ARG ILE THR LEU ALA GLU ALA LEU LEU SEQRES 37 A 490 HIS PRO PHE PHE ALA GLY LEU THR PRO GLU GLU ARG SER SEQRES 38 A 490 PHE HIS THR SER ARG ASN PRO SER ARG HET 3NG A1000 25 HETNAM 3NG 5-[(3-CHLOROPHENYL)AMINO]BENZO[C][2,6]NAPHTHYRIDINE-8- HETNAM 2 3NG CARBOXYLIC ACID FORMUL 2 3NG C19 H12 CL N3 O2 FORMUL 3 HOH *66(H2 O) HELIX 1 AA1 VAL A 191 ASP A 212 1 22 HELIX 2 AA2 ASN A 242 ASN A 250 1 9 HELIX 3 AA3 PRO A 256 GLU A 276 1 21 HELIX 4 AA4 LYS A 285 GLU A 287 5 3 HELIX 5 AA5 THR A 337 ARG A 341 5 5 HELIX 6 AA6 PRO A 342 LEU A 347 1 6 HELIX 7 AA7 GLN A 353 GLY A 370 1 18 HELIX 8 AA8 GLU A 378 GLY A 391 1 14 HELIX 9 AA9 PRO A 394 ARG A 400 1 7 HELIX 10 AB1 LYS A 403 LYS A 405 5 3 HELIX 11 AB2 SER A 418 CYS A 428 1 11 HELIX 12 AB3 PRO A 430 MET A 435 5 6 HELIX 13 AB4 SER A 439 LEU A 453 1 15 HELIX 14 AB5 THR A 462 LEU A 467 1 6 HELIX 15 AB6 LEU A 468 LEU A 475 5 8 SHEET 1 AA1 2 TRP A 151 LEU A 152 0 SHEET 2 AA1 2 TYR A 156 GLU A 157 -1 O TYR A 156 N LEU A 152 SHEET 1 AA2 5 GLY A 160 GLY A 165 0 SHEET 2 AA2 5 GLY A 168 CYS A 173 -1 O GLU A 172 N GLY A 160 SHEET 3 AA2 5 VAL A 183 ILE A 188 -1 O ILE A 187 N LYS A 169 SHEET 4 AA2 5 HIS A 231 GLU A 237 -1 O PHE A 236 N ALA A 184 SHEET 5 AA2 5 MET A 222 PHE A 228 -1 N SER A 223 O ALA A 235 SHEET 1 AA3 2 LEU A 279 THR A 280 0 SHEET 2 AA3 2 THR A 325 PHE A 326 -1 O THR A 325 N THR A 280 SHEET 1 AA4 2 ILE A 289 PHE A 291 0 SHEET 2 AA4 2 ILE A 316 VAL A 318 -1 O ARG A 317 N LEU A 290 SHEET 1 AA5 2 PHE A 407 TYR A 408 0 SHEET 2 AA5 2 GLY A 411 LEU A 412 -1 O GLY A 411 N TYR A 408 SITE 1 AC1 11 LEU A 162 GLY A 163 GLU A 164 PHE A 167 SITE 2 AC1 11 ALA A 184 LYS A 186 PHE A 236 LEU A 238 SITE 3 AC1 11 LEU A 239 LEU A 290 ASP A 320 CRYST1 61.819 114.978 158.284 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016176 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008697 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006318 0.00000