HEADER TRANSPORT PROTEIN 17-JUL-19 6KI1 TITLE THE TRANSMEMBRANE DOMAIN OF A CYANOBACTERIUM BICARBONATE TRANSPORTER TITLE 2 BICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOW AFFINITY SULFATE TRANSPORTER; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TRANSMEMBRANE DOMAIN; COMPND 5 SYNONYM: BICA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP. PCC 6803; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BICARBONATE TRANSPORTER, CO2-CONCENTRATING MECHANISMS (CCM), KEYWDS 2 CYANOBACTERIA, SOLUTE CARRIER (SLC), STAS DOMAIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.ZHANG,C.C.WANG REVDAT 3 22-NOV-23 6KI1 1 LINK REVDAT 2 25-DEC-19 6KI1 1 JRNL REVDAT 1 20-NOV-19 6KI1 0 JRNL AUTH C.WANG,B.SUN,X.ZHANG,X.HUANG,M.ZHANG,H.GUO,X.CHEN,F.HUANG, JRNL AUTH 2 T.CHEN,H.MI,F.YU,L.N.LIU,P.ZHANG JRNL TITL STRUCTURAL MECHANISM OF THE ACTIVE BICARBONATE TRANSPORTER JRNL TITL 2 FROM CYANOBACTERIA. JRNL REF NAT.PLANTS V. 5 1184 2019 JRNL REFN ESSN 2055-0278 JRNL PMID 31712753 JRNL DOI 10.1038/S41477-019-0538-1 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.28 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 17747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 889 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2770 - 5.0972 0.52 3345 178 0.2216 0.2470 REMARK 3 2 5.0972 - 4.0492 0.51 3309 174 0.2075 0.2658 REMARK 3 3 4.0492 - 3.5384 0.51 3306 174 0.2265 0.2667 REMARK 3 4 3.5384 - 3.2153 0.50 3264 172 0.2418 0.2990 REMARK 3 5 3.2153 - 2.9851 0.39 2547 134 0.2615 0.3243 REMARK 3 6 2.9851 - 2.8092 0.17 1087 57 0.2650 0.3179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5742 REMARK 3 ANGLE : 2.339 7801 REMARK 3 CHIRALITY : 0.104 989 REMARK 3 PLANARITY : 0.011 962 REMARK 3 DIHEDRAL : 18.518 2007 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300012989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20636 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.90700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5IOF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NACL, 0.1 M LI2SO4, 0.1 M NA REMARK 280 -CITRATE, PH5.0, 30% PEG600, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.67300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 190 REMARK 465 TRP A 191 REMARK 465 LYS A 192 REMARK 465 ARG A 364 REMARK 465 ALA A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 170 O LEU A 216 2.05 REMARK 500 O ALA A 301 O1 BCT A 401 2.07 REMARK 500 O LEU B 233 N VAL B 235 2.12 REMARK 500 O VAL A 379 OG1 THR A 383 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD1 ILE A 221 CD1 ILE B 221 2655 1.69 REMARK 500 NH2 ARG B 10 NE2 GLN B 237 1455 2.02 REMARK 500 CG2 ILE A 221 CD1 ILE B 221 2655 2.09 REMARK 500 CG1 ILE A 221 CD1 ILE B 221 2655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO B 196 CD PRO B 196 N 0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 71 C - N - CA ANGL. DEV. = 14.8 DEGREES REMARK 500 PRO A 71 C - N - CD ANGL. DEV. = -25.4 DEGREES REMARK 500 PRO A 71 CB - CA - C ANGL. DEV. = -13.5 DEGREES REMARK 500 LYS A 113 CB - CA - C ANGL. DEV. = -14.7 DEGREES REMARK 500 PRO A 151 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 VAL A 155 CB - CA - C ANGL. DEV. = -25.4 DEGREES REMARK 500 ILE A 156 N - CA - CB ANGL. DEV. = 14.3 DEGREES REMARK 500 ILE A 156 N - CA - C ANGL. DEV. = -24.3 DEGREES REMARK 500 PHE A 186 CB - CA - C ANGL. DEV. = -28.9 DEGREES REMARK 500 PHE A 186 N - CA - C ANGL. DEV. = 20.9 DEGREES REMARK 500 MET A 187 N - CA - CB ANGL. DEV. = -16.6 DEGREES REMARK 500 GLY A 222 N - CA - C ANGL. DEV. = -15.5 DEGREES REMARK 500 PRO A 229 C - N - CD ANGL. DEV. = 13.6 DEGREES REMARK 500 PRO A 234 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 PRO A 234 C - N - CD ANGL. DEV. = -15.7 DEGREES REMARK 500 PHE A 236 N - CA - C ANGL. DEV. = 21.8 DEGREES REMARK 500 GLN A 237 N - CA - CB ANGL. DEV. = 13.2 DEGREES REMARK 500 THR A 302 CB - CA - C ANGL. DEV. = -20.4 DEGREES REMARK 500 MET A 303 N - CA - C ANGL. DEV. = -19.1 DEGREES REMARK 500 LEU A 342 CA - CB - CG ANGL. DEV. = 17.2 DEGREES REMARK 500 TRP A 359 CB - CA - C ANGL. DEV. = -37.1 DEGREES REMARK 500 TRP A 359 N - CA - C ANGL. DEV. = 34.6 DEGREES REMARK 500 GLY A 360 C - N - CA ANGL. DEV. = 40.6 DEGREES REMARK 500 PRO B 71 C - N - CA ANGL. DEV. = 16.2 DEGREES REMARK 500 PRO B 71 C - N - CD ANGL. DEV. = -18.8 DEGREES REMARK 500 MET B 120 N - CA - C ANGL. DEV. = -23.5 DEGREES REMARK 500 MET B 121 C - N - CA ANGL. DEV. = 20.1 DEGREES REMARK 500 MET B 130 CG - SD - CE ANGL. DEV. = -10.4 DEGREES REMARK 500 LEU B 162 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ALA B 195 CB - CA - C ANGL. DEV. = -25.8 DEGREES REMARK 500 ALA B 195 N - CA - C ANGL. DEV. = 38.3 DEGREES REMARK 500 PRO B 196 C - N - CA ANGL. DEV. = 39.1 DEGREES REMARK 500 PRO B 196 C - N - CD ANGL. DEV. = -33.2 DEGREES REMARK 500 PRO B 196 CA - N - CD ANGL. DEV. = -9.6 DEGREES REMARK 500 PRO B 196 N - CA - CB ANGL. DEV. = 8.9 DEGREES REMARK 500 PRO B 229 CB - CA - C ANGL. DEV. = 22.4 DEGREES REMARK 500 PRO B 229 N - CA - C ANGL. DEV. = -18.1 DEGREES REMARK 500 GLN B 232 N - CA - C ANGL. DEV. = -33.8 DEGREES REMARK 500 PHE B 236 CB - CA - C ANGL. DEV. = -28.6 DEGREES REMARK 500 PHE B 236 N - CA - C ANGL. DEV. = 33.7 DEGREES REMARK 500 GLN B 237 N - CA - CB ANGL. DEV. = -12.5 DEGREES REMARK 500 GLN B 237 N - CA - C ANGL. DEV. = -24.8 DEGREES REMARK 500 ALA B 238 CB - CA - C ANGL. DEV. = -22.7 DEGREES REMARK 500 ASP B 239 C - N - CA ANGL. DEV. = 21.0 DEGREES REMARK 500 THR B 302 CB - CA - C ANGL. DEV. = -26.0 DEGREES REMARK 500 MET B 303 N - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 ALA B 338 CB - CA - C ANGL. DEV. = -26.4 DEGREES REMARK 500 TRP B 359 CB - CA - C ANGL. DEV. = -40.7 DEGREES REMARK 500 GLY B 360 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 111 -7.56 -58.29 REMARK 500 LYS A 113 42.79 32.00 REMARK 500 ILE A 156 -41.76 -133.37 REMARK 500 PRO A 163 -74.13 -53.20 REMARK 500 VAL A 169 154.12 -47.08 REMARK 500 ALA A 195 47.54 76.79 REMARK 500 PRO A 196 137.04 -36.56 REMARK 500 SER A 209 35.24 -87.71 REMARK 500 LEU A 212 44.41 -87.87 REMARK 500 ALA A 226 -149.10 61.25 REMARK 500 GLN A 237 11.51 54.87 REMARK 500 ALA A 299 -174.60 -173.28 REMARK 500 THR A 302 -6.39 65.82 REMARK 500 ARG A 314 -6.89 -141.75 REMARK 500 LEU A 362 -115.93 -68.66 REMARK 500 SER A 369 151.77 -41.00 REMARK 500 LYS B 6 109.37 -57.70 REMARK 500 ASP B 87 100.05 -163.16 REMARK 500 VAL B 155 -91.20 107.60 REMARK 500 ALA B 195 53.04 70.00 REMARK 500 PRO B 196 141.10 -39.85 REMARK 500 ILE B 224 -8.62 73.78 REMARK 500 PRO B 234 67.29 -48.96 REMARK 500 VAL B 235 0.19 -68.76 REMARK 500 PHE B 236 31.41 -84.72 REMARK 500 GLN B 240 -5.58 82.48 REMARK 500 THR B 272 -162.92 -116.66 REMARK 500 THR B 302 -3.53 63.44 REMARK 500 ALA B 316 -4.26 -57.14 REMARK 500 THR B 339 -25.80 -144.34 REMARK 500 ARG B 364 -142.56 -122.87 REMARK 500 ALA B 365 79.94 28.51 REMARK 500 HIS B 367 144.80 -177.84 REMARK 500 SER B 369 121.48 -33.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 70 PRO A 71 131.49 REMARK 500 GLY A 153 GLY A 154 -32.52 REMARK 500 ASN A 164 LEU A 165 143.43 REMARK 500 LYS A 193 PHE A 194 133.66 REMARK 500 PHE A 194 ALA A 195 -130.62 REMARK 500 SER A 209 ILE A 210 146.08 REMARK 500 LEU A 233 PRO A 234 121.26 REMARK 500 TRP A 359 GLY A 360 106.74 REMARK 500 GLY B 70 PRO B 71 122.99 REMARK 500 MET B 120 MET B 121 136.16 REMARK 500 ALA B 195 PRO B 196 -137.58 REMARK 500 PRO B 229 ALA B 230 144.68 REMARK 500 PRO B 234 VAL B 235 147.39 REMARK 500 ALA B 238 ASP B 239 119.73 REMARK 500 ALA B 338 THR B 339 149.71 REMARK 500 TRP B 359 GLY B 360 145.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 258 OD1 REMARK 620 2 THR A 262 OG1 98.1 REMARK 620 3 GLY A 300 O 69.7 77.6 REMARK 620 4 THR A 302 OG1 164.0 66.1 106.7 REMARK 620 5 BCT A 401 O3 103.2 158.8 109.2 92.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 402 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 258 O REMARK 620 2 ASP B 258 OD1 54.7 REMARK 620 3 THR B 262 OG1 62.6 112.8 REMARK 620 4 GLY B 300 O 76.0 77.1 66.5 REMARK 620 5 THR B 302 OG1 122.0 171.1 61.3 94.2 REMARK 620 6 BCT B 401 O3 143.0 89.6 153.6 107.8 94.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 403 DBREF 6KI1 A 2 393 UNP Q55415 Q55415_SYNY3 2 393 DBREF 6KI1 B 2 393 UNP Q55415 Q55415_SYNY3 2 393 SEQRES 1 A 392 GLN ILE THR ASN LYS ILE HIS PHE ARG ASN LEU GLN GLY SEQRES 2 A 392 ASP LEU PHE GLY GLY VAL THR ALA ALA VAL ILE ALA LEU SEQRES 3 A 392 PRO MET ALA LEU ALA PHE GLY ILE ALA SER GLY ALA GLY SEQRES 4 A 392 ALA THR ALA GLY LEU TRP GLY ALA VAL ILE VAL GLY PHE SEQRES 5 A 392 PHE ALA ALA LEU PHE GLY GLY THR PRO THR LEU ILE SER SEQRES 6 A 392 GLU PRO THR GLY PRO MET THR VAL VAL GLN THR ALA VAL SEQRES 7 A 392 ILE ALA SER LEU VAL ALA ALA ASP PRO ASP ASN GLY LEU SEQRES 8 A 392 ALA MET ALA PHE THR VAL VAL MET MET ALA GLY LEU PHE SEQRES 9 A 392 GLN ILE ALA PHE GLY LEU LEU LYS LEU GLY LYS TYR VAL SEQRES 10 A 392 THR MET MET PRO TYR THR VAL ILE SER GLY PHE MET SER SEQRES 11 A 392 GLY ILE GLY ILE ILE LEU VAL ILE LEU GLN LEU ALA PRO SEQRES 12 A 392 PHE LEU GLY GLN ALA SER PRO LYS GLY GLY VAL ILE GLY SEQRES 13 A 392 THR LEU GLN ALA LEU PRO ASN LEU VAL SER ASN VAL ARG SEQRES 14 A 392 PRO VAL GLU THR LEU LEU ALA LEU MET THR VAL GLY ILE SEQRES 15 A 392 ILE TRP PHE MET PRO SER ARG TRP LYS LYS PHE ALA PRO SEQRES 16 A 392 PRO GLN LEU VAL ALA LEU VAL LEU GLY THR ILE ILE SER SEQRES 17 A 392 ILE THR LEU PHE GLY ASP LEU ASP ILE ARG ARG ILE GLY SEQRES 18 A 392 GLU ILE GLN ALA GLY LEU PRO ALA LEU GLN LEU PRO VAL SEQRES 19 A 392 PHE GLN ALA ASP GLN LEU GLN ARG MET LEU ILE ASP ALA SEQRES 20 A 392 ALA VAL LEU GLY MET LEU GLY CYS ILE ASP ALA LEU LEU SEQRES 21 A 392 THR SER VAL VAL ALA ASP SER LEU THR ARG THR GLU HIS SEQRES 22 A 392 ASN SER ASN LYS GLU LEU VAL GLY GLN GLY ILE GLY ASN SEQRES 23 A 392 VAL MET SER GLY LEU PHE GLY GLY LEU GLY GLY ALA GLY SEQRES 24 A 392 ALA THR MET GLY THR VAL VAL ASN ILE GLN SER GLY GLY SEQRES 25 A 392 ARG THR ALA LEU SER GLY LEU ILE ARG ALA MET VAL LEU SEQRES 26 A 392 LEU VAL VAL ILE LEU GLY ALA ALA LYS LEU ALA ALA THR SEQRES 27 A 392 ILE PRO LEU ALA VAL LEU ALA GLY ILE ALA PHE LYS VAL SEQRES 28 A 392 GLY VAL ASP ILE ILE ASP TRP GLY PHE LEU LYS ARG ALA SEQRES 29 A 392 HIS HIS VAL SER ILE LYS GLY ALA LEU ILE MET TYR ALA SEQRES 30 A 392 VAL ILE VAL LEU THR VAL LEU VAL ASP LEU ILE ALA ALA SEQRES 31 A 392 VAL GLY SEQRES 1 B 392 GLN ILE THR ASN LYS ILE HIS PHE ARG ASN LEU GLN GLY SEQRES 2 B 392 ASP LEU PHE GLY GLY VAL THR ALA ALA VAL ILE ALA LEU SEQRES 3 B 392 PRO MET ALA LEU ALA PHE GLY ILE ALA SER GLY ALA GLY SEQRES 4 B 392 ALA THR ALA GLY LEU TRP GLY ALA VAL ILE VAL GLY PHE SEQRES 5 B 392 PHE ALA ALA LEU PHE GLY GLY THR PRO THR LEU ILE SER SEQRES 6 B 392 GLU PRO THR GLY PRO MET THR VAL VAL GLN THR ALA VAL SEQRES 7 B 392 ILE ALA SER LEU VAL ALA ALA ASP PRO ASP ASN GLY LEU SEQRES 8 B 392 ALA MET ALA PHE THR VAL VAL MET MET ALA GLY LEU PHE SEQRES 9 B 392 GLN ILE ALA PHE GLY LEU LEU LYS LEU GLY LYS TYR VAL SEQRES 10 B 392 THR MET MET PRO TYR THR VAL ILE SER GLY PHE MET SER SEQRES 11 B 392 GLY ILE GLY ILE ILE LEU VAL ILE LEU GLN LEU ALA PRO SEQRES 12 B 392 PHE LEU GLY GLN ALA SER PRO LYS GLY GLY VAL ILE GLY SEQRES 13 B 392 THR LEU GLN ALA LEU PRO ASN LEU VAL SER ASN VAL ARG SEQRES 14 B 392 PRO VAL GLU THR LEU LEU ALA LEU MET THR VAL GLY ILE SEQRES 15 B 392 ILE TRP PHE MET PRO SER ARG TRP LYS LYS PHE ALA PRO SEQRES 16 B 392 PRO GLN LEU VAL ALA LEU VAL LEU GLY THR ILE ILE SER SEQRES 17 B 392 ILE THR LEU PHE GLY ASP LEU ASP ILE ARG ARG ILE GLY SEQRES 18 B 392 GLU ILE GLN ALA GLY LEU PRO ALA LEU GLN LEU PRO VAL SEQRES 19 B 392 PHE GLN ALA ASP GLN LEU GLN ARG MET LEU ILE ASP ALA SEQRES 20 B 392 ALA VAL LEU GLY MET LEU GLY CYS ILE ASP ALA LEU LEU SEQRES 21 B 392 THR SER VAL VAL ALA ASP SER LEU THR ARG THR GLU HIS SEQRES 22 B 392 ASN SER ASN LYS GLU LEU VAL GLY GLN GLY ILE GLY ASN SEQRES 23 B 392 VAL MET SER GLY LEU PHE GLY GLY LEU GLY GLY ALA GLY SEQRES 24 B 392 ALA THR MET GLY THR VAL VAL ASN ILE GLN SER GLY GLY SEQRES 25 B 392 ARG THR ALA LEU SER GLY LEU ILE ARG ALA MET VAL LEU SEQRES 26 B 392 LEU VAL VAL ILE LEU GLY ALA ALA LYS LEU ALA ALA THR SEQRES 27 B 392 ILE PRO LEU ALA VAL LEU ALA GLY ILE ALA PHE LYS VAL SEQRES 28 B 392 GLY VAL ASP ILE ILE ASP TRP GLY PHE LEU LYS ARG ALA SEQRES 29 B 392 HIS HIS VAL SER ILE LYS GLY ALA LEU ILE MET TYR ALA SEQRES 30 B 392 VAL ILE VAL LEU THR VAL LEU VAL ASP LEU ILE ALA ALA SEQRES 31 B 392 VAL GLY HET BCT A 401 4 HET NA A 402 1 HET OLC A 403 25 HET BCT B 401 4 HET NA B 402 1 HET OLC B 403 25 HETNAM BCT BICARBONATE ION HETNAM NA SODIUM ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 3 BCT 2(C H O3 1-) FORMUL 4 NA 2(NA 1+) FORMUL 5 OLC 2(C21 H40 O4) HELIX 1 AA1 ASN A 11 GLY A 38 1 28 HELIX 2 AA2 ALA A 41 GLY A 59 1 19 HELIX 3 AA3 PRO A 71 ASP A 87 1 17 HELIX 4 AA4 ASN A 90 LEU A 112 1 23 HELIX 5 AA5 LEU A 114 MET A 120 5 7 HELIX 6 AA6 PRO A 122 GLY A 147 1 26 HELIX 7 AA7 ILE A 156 ALA A 161 1 6 HELIX 8 AA8 PRO A 163 SER A 167 5 5 HELIX 9 AA9 ARG A 170 MET A 187 1 18 HELIX 10 AB1 PRO A 196 ILE A 208 1 13 HELIX 11 AB2 SER A 209 THR A 211 5 3 HELIX 12 AB3 GLN A 240 LEU A 269 1 30 HELIX 13 AB4 ASN A 275 LEU A 292 1 18 HELIX 14 AB5 MET A 303 SER A 311 1 9 HELIX 15 AB6 THR A 315 ALA A 338 1 24 HELIX 16 AB7 PRO A 341 ILE A 357 1 17 HELIX 17 AB8 ASP A 358 LYS A 363 1 6 HELIX 18 AB9 SER A 369 ALA A 391 1 23 HELIX 19 AC1 ASN B 11 GLY B 38 1 28 HELIX 20 AC2 GLY B 40 PHE B 58 1 19 HELIX 21 AC3 PRO B 71 ASP B 87 1 17 HELIX 22 AC4 ASN B 90 LEU B 112 1 23 HELIX 23 AC5 LEU B 114 THR B 119 5 6 HELIX 24 AC6 PRO B 122 LEU B 146 1 25 HELIX 25 AC7 ALA B 161 ASN B 168 1 8 HELIX 26 AC8 ARG B 170 MET B 187 1 18 HELIX 27 AC9 PRO B 188 PHE B 194 5 7 HELIX 28 AD1 PRO B 196 ILE B 208 1 13 HELIX 29 AD2 SER B 209 THR B 211 5 3 HELIX 30 AD3 GLN B 240 ARG B 271 1 32 HELIX 31 AD4 ASN B 275 PHE B 293 1 19 HELIX 32 AD5 MET B 303 GLN B 310 1 8 HELIX 33 AD6 ALA B 316 ALA B 338 1 23 HELIX 34 AD7 PRO B 341 ILE B 357 1 17 HELIX 35 AD8 SER B 369 GLY B 393 1 25 SHEET 1 AA1 2 SER A 66 GLU A 67 0 SHEET 2 AA1 2 ALA A 299 GLY A 300 -1 O ALA A 299 N GLU A 67 SHEET 1 AA2 2 SER B 66 GLU B 67 0 SHEET 2 AA2 2 ALA B 299 GLY B 300 -1 O ALA B 299 N GLU B 67 LINK OD1 ASP A 258 NA NA A 402 1555 1555 2.28 LINK OG1 THR A 262 NA NA A 402 1555 1555 2.47 LINK O GLY A 300 NA NA A 402 1555 1555 2.70 LINK OG1 THR A 302 NA NA A 402 1555 1555 2.74 LINK O3 BCT A 401 NA NA A 402 1555 1555 2.56 LINK O ASP B 258 NA NA B 402 1555 1555 3.17 LINK OD1 ASP B 258 NA NA B 402 1555 1555 2.09 LINK OG1 THR B 262 NA NA B 402 1555 1555 2.36 LINK O GLY B 300 NA NA B 402 1555 1555 2.53 LINK OG1 THR B 302 NA NA B 402 1555 1555 2.69 LINK O3 BCT B 401 NA NA B 402 1555 1555 3.00 SITE 1 AC1 3 THR A 69 ALA A 301 NA A 402 SITE 1 AC2 6 ASP A 258 THR A 262 GLY A 300 ALA A 301 SITE 2 AC2 6 THR A 302 BCT A 401 SITE 1 AC3 5 MET A 121 ILE A 126 PHE A 129 MET A 130 SITE 2 AC3 5 ILE A 257 SITE 1 AC4 4 THR B 69 ASP B 258 ALA B 301 NA B 402 SITE 1 AC5 6 ASP B 258 THR B 262 GLY B 300 THR B 302 SITE 2 AC5 6 BCT B 401 OLC B 403 SITE 1 AC6 7 PHE B 129 MET B 130 ILE B 257 ASP B 258 SITE 2 AC6 7 LEU B 261 LEU B 382 NA B 402 CRYST1 51.813 103.346 81.521 90.00 95.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019300 0.000000 0.001825 0.00000 SCALE2 0.000000 0.009676 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012322 0.00000