HEADER TRANSFERASE 22-JUL-19 6KJB TITLE WILD-TYPE APO-FORM E. COLI ATCASE HOLOENZYME WITH AN UNUSUAL OPEN TITLE 2 CONFORMATION OF R167 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE CATALYTIC SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTATE TRANSCARBAMYLASE,ATCASE; COMPND 5 EC: 2.1.3.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ASPARTATE CARBAMOYLTRANSFERASE REGULATORY CHAIN; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K-12; SOURCE 5 GENE: PYRB, B4245, JW4204; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 10 ORGANISM_TAXID: 83333; SOURCE 11 STRAIN: K-12; SOURCE 12 GENE: PYRI, B4244, JW4203; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ASPARTATE TRANSCARBAMOYLASE HOLOENZYME, DE NOVO PYRIMIDINE KEYWDS 2 BIOSYNTHESIS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.WANG,Z.LEI,J.ZHENG,Z.C.JIA REVDAT 2 22-NOV-23 6KJB 1 REMARK REVDAT 1 03-JUN-20 6KJB 0 SPRSDE 03-JUN-20 6KJB 4WTO JRNL AUTH Z.LEI,N.WANG,H.TAN,J.ZHENG,Z.JIA JRNL TITL CONFORMATIONAL PLASTICITY OF THE ACTIVE SITE ENTRANCE INE. JRNL TITL 2 COLIASPARTATE TRANSCARBAMOYLASE AND ITS IMPLICATION IN JRNL TITL 3 FEEDBACK REGULATION. JRNL REF INT J MOL SCI V. 21 2020 JRNL REFN ESSN 1422-0067 JRNL PMID 31947715 JRNL DOI 10.3390/IJMS21010320 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14-3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 39475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3590 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0800 - 2.0600 0.52 1449 73 0.2660 0.3072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7008 61.6944 6.1253 REMARK 3 T TENSOR REMARK 3 T11: 0.1932 T22: 0.1099 REMARK 3 T33: 0.0980 T12: -0.0312 REMARK 3 T13: -0.1027 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.2713 L22: 0.1381 REMARK 3 L33: 0.4218 L12: 0.0874 REMARK 3 L13: -0.1709 L23: 0.0654 REMARK 3 S TENSOR REMARK 3 S11: 0.1449 S12: 0.2081 S13: -0.0599 REMARK 3 S21: -0.1602 S22: 0.1120 S23: 0.0993 REMARK 3 S31: 0.0702 S32: -0.1058 S33: 0.6851 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4252 41.3178 17.4972 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.1743 REMARK 3 T33: 0.2459 T12: -0.1448 REMARK 3 T13: -0.1854 T23: 0.0207 REMARK 3 L TENSOR REMARK 3 L11: 0.0071 L22: 0.0345 REMARK 3 L33: 0.0217 L12: 0.0067 REMARK 3 L13: -0.0084 L23: -0.0239 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: -0.0333 S13: -0.1480 REMARK 3 S21: 0.0272 S22: 0.0252 S23: -0.0219 REMARK 3 S31: 0.1108 S32: -0.0483 S33: 0.1479 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0951 46.8581 11.6768 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.1433 REMARK 3 T33: 0.2006 T12: -0.0189 REMARK 3 T13: -0.1986 T23: -0.0751 REMARK 3 L TENSOR REMARK 3 L11: 0.0616 L22: 0.0649 REMARK 3 L33: 0.0475 L12: 0.0239 REMARK 3 L13: -0.0170 L23: 0.0374 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: 0.0240 S13: -0.1329 REMARK 3 S21: -0.0562 S22: 0.0211 S23: -0.0536 REMARK 3 S31: -0.0176 S32: 0.0371 S33: 0.0821 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.4243 71.1266 21.3199 REMARK 3 T TENSOR REMARK 3 T11: 0.9493 T22: 1.0292 REMARK 3 T33: 1.0711 T12: 0.0077 REMARK 3 T13: -0.0742 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.0013 L22: 0.0015 REMARK 3 L33: 0.0021 L12: 0.0000 REMARK 3 L13: -0.0003 L23: -0.0018 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0022 S13: -0.0048 REMARK 3 S21: -0.0040 S22: -0.0001 S23: 0.0031 REMARK 3 S31: -0.0039 S32: -0.0036 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.2034 70.6349 25.1850 REMARK 3 T TENSOR REMARK 3 T11: 0.3099 T22: 0.6323 REMARK 3 T33: 1.0679 T12: -0.0430 REMARK 3 T13: -0.0660 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 0.0082 L22: 0.0012 REMARK 3 L33: 0.0032 L12: 0.0026 REMARK 3 L13: 0.0048 L23: 0.0015 REMARK 3 S TENSOR REMARK 3 S11: -0.0133 S12: 0.0092 S13: -0.0155 REMARK 3 S21: -0.0070 S22: -0.0451 S23: 0.0637 REMARK 3 S31: 0.0002 S32: -0.0456 S33: -0.0003 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 75 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.1563 62.8965 19.0441 REMARK 3 T TENSOR REMARK 3 T11: 0.4397 T22: 0.6054 REMARK 3 T33: 0.8437 T12: -0.1140 REMARK 3 T13: -0.0831 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 0.0046 L22: 0.0147 REMARK 3 L33: 0.0000 L12: 0.0038 REMARK 3 L13: -0.0005 L23: 0.0001 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.0153 S13: -0.0361 REMARK 3 S21: -0.0332 S22: -0.0467 S23: -0.0261 REMARK 3 S31: -0.0427 S32: -0.0445 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.7116 60.8272 22.7070 REMARK 3 T TENSOR REMARK 3 T11: 0.2382 T22: 0.2205 REMARK 3 T33: 0.3596 T12: -0.0543 REMARK 3 T13: 0.0165 T23: 0.0874 REMARK 3 L TENSOR REMARK 3 L11: 0.0135 L22: 0.0004 REMARK 3 L33: 0.0078 L12: -0.0012 REMARK 3 L13: -0.0081 L23: -0.0000 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: -0.0494 S13: -0.0644 REMARK 3 S21: 0.0417 S22: 0.0435 S23: 0.1548 REMARK 3 S31: 0.0210 S32: -0.0112 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 6KJB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39940 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1ZA1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0 10% GLYCEROL AND 10% REMARK 280 PEG 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 64.84000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.43539 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 65.99333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 64.84000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.43539 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 65.99333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 64.84000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.43539 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.99333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 64.84000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.43539 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.99333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 64.84000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.43539 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 65.99333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 64.84000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.43539 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 65.99333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.87078 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 131.98667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 74.87078 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 131.98667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 74.87078 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 131.98667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 74.87078 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 131.98667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 74.87078 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 131.98667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 74.87078 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 131.98667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 26160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 102730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 64.84000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 112.30617 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -64.84000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 112.30617 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -64.84000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 37.43539 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 65.99333 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 149.74157 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 65.99333 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 64.84000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 37.43539 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 65.99333 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 346 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 76 REMARK 465 ALA A 77 REMARK 465 ASN A 78 REMARK 465 THR A 79 REMARK 465 SER A 80 REMARK 465 LEU A 81 REMARK 465 GLY A 82 REMARK 465 LYS A 83 REMARK 465 LYS A 84 REMARK 465 LEU A 310 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 HIS B 3 REMARK 465 ASP B 4 REMARK 465 ASN B 5 REMARK 465 LYS B 6 REMARK 465 LEU B 7 REMARK 465 GLN B 8 REMARK 465 VAL B 9 REMARK 465 GLU B 10 REMARK 465 LEU B 48 REMARK 465 PRO B 49 REMARK 465 SER B 50 REMARK 465 GLY B 51 REMARK 465 GLU B 52 REMARK 465 MET B 53 REMARK 465 GLY B 54 REMARK 465 ARG B 55 REMARK 465 LYS B 56 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 GLU B 90 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 327 O HOH B 362 1.86 REMARK 500 O HOH A 541 O HOH A 573 1.92 REMARK 500 O HOH A 508 O HOH A 648 2.05 REMARK 500 O HOH A 610 O HOH A 644 2.05 REMARK 500 O HOH A 662 O HOH A 675 2.06 REMARK 500 O HOH A 556 O HOH A 578 2.07 REMARK 500 OE1 GLN A 108 O HOH A 401 2.09 REMARK 500 O HOH A 604 O HOH A 615 2.09 REMARK 500 O ASP B 19 O HOH B 301 2.09 REMARK 500 O HOH A 545 O HOH A 616 2.10 REMARK 500 O HOH A 569 O HOH A 608 2.11 REMARK 500 O HOH A 508 O HOH A 516 2.13 REMARK 500 O THR B 82 O HOH B 301 2.13 REMARK 500 O HOH A 492 O HOH A 505 2.14 REMARK 500 OD1 ASP A 278 OH TYR A 285 2.15 REMARK 500 O HOH B 339 O HOH B 361 2.15 REMARK 500 O HOH A 658 O HOH A 659 2.17 REMARK 500 O HOH A 658 O HOH A 680 2.17 REMARK 500 OE2 GLU A 239 O HOH A 402 2.17 REMARK 500 O HOH A 410 O HOH A 419 2.19 REMARK 500 OE1 GLN A 146 O HOH A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 402 O HOH A 564 10455 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 48 76.54 -105.01 REMARK 500 ASN A 132 -88.48 -95.18 REMARK 500 LEU A 267 152.39 70.15 REMARK 500 VAL A 270 -79.29 -99.17 REMARK 500 TRP A 284 16.80 -140.68 REMARK 500 LYS B 13 -95.46 -73.83 REMARK 500 GLU B 37 33.92 -95.64 REMARK 500 THR B 38 -167.19 -106.53 REMARK 500 LYS B 94 84.22 -150.89 REMARK 500 ASN B 105 -44.45 74.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 684 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 685 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 686 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A 687 DISTANCE = 6.96 ANGSTROMS REMARK 525 HOH B 367 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH B 368 DISTANCE = 6.72 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 109 SG REMARK 620 2 CYS B 114 SG 115.4 REMARK 620 3 CYS B 138 SG 115.0 104.5 REMARK 620 4 CYS B 141 SG 100.0 116.4 105.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 DBREF 6KJB A 1 310 UNP P0A786 PYRB_ECOLI 2 311 DBREF 6KJB B 1 153 UNP P0A7F3 PYRI_ECOLI 1 153 SEQRES 1 A 310 ALA ASN PRO LEU TYR GLN LYS HIS ILE ILE SER ILE ASN SEQRES 2 A 310 ASP LEU SER ARG ASP ASP LEU ASN LEU VAL LEU ALA THR SEQRES 3 A 310 ALA ALA LYS LEU LYS ALA ASN PRO GLN PRO GLU LEU LEU SEQRES 4 A 310 LYS HIS LYS VAL ILE ALA SER CYS PHE PHE GLU ALA SER SEQRES 5 A 310 THR ARG THR ARG LEU SER PHE GLU THR SER MET HIS ARG SEQRES 6 A 310 LEU GLY ALA SER VAL VAL GLY PHE SER ASP SER ALA ASN SEQRES 7 A 310 THR SER LEU GLY LYS LYS GLY GLU THR LEU ALA ASP THR SEQRES 8 A 310 ILE SER VAL ILE SER THR TYR VAL ASP ALA ILE VAL MET SEQRES 9 A 310 ARG HIS PRO GLN GLU GLY ALA ALA ARG LEU ALA THR GLU SEQRES 10 A 310 PHE SER GLY ASN VAL PRO VAL LEU ASN ALA GLY ASP GLY SEQRES 11 A 310 SER ASN GLN HIS PRO THR GLN THR LEU LEU ASP LEU PHE SEQRES 12 A 310 THR ILE GLN GLU THR GLN GLY ARG LEU ASP ASN LEU HIS SEQRES 13 A 310 VAL ALA MET VAL GLY ASP LEU LYS TYR GLY ARG THR VAL SEQRES 14 A 310 HIS SER LEU THR GLN ALA LEU ALA LYS PHE ASP GLY ASN SEQRES 15 A 310 ARG PHE TYR PHE ILE ALA PRO ASP ALA LEU ALA MET PRO SEQRES 16 A 310 GLN TYR ILE LEU ASP MET LEU ASP GLU LYS GLY ILE ALA SEQRES 17 A 310 TRP SER LEU HIS SER SER ILE GLU GLU VAL MET ALA GLU SEQRES 18 A 310 VAL ASP ILE LEU TYR MET THR ARG VAL GLN LYS GLU ARG SEQRES 19 A 310 LEU ASP PRO SER GLU TYR ALA ASN VAL LYS ALA GLN PHE SEQRES 20 A 310 VAL LEU ARG ALA SER ASP LEU HIS ASN ALA LYS ALA ASN SEQRES 21 A 310 MET LYS VAL LEU HIS PRO LEU PRO ARG VAL ASP GLU ILE SEQRES 22 A 310 ALA THR ASP VAL ASP LYS THR PRO HIS ALA TRP TYR PHE SEQRES 23 A 310 GLN GLN ALA GLY ASN GLY ILE PHE ALA ARG GLN ALA LEU SEQRES 24 A 310 LEU ALA LEU VAL LEU ASN ARG ASP LEU VAL LEU SEQRES 1 B 153 MET THR HIS ASP ASN LYS LEU GLN VAL GLU ALA ILE LYS SEQRES 2 B 153 ARG GLY THR VAL ILE ASP HIS ILE PRO ALA GLN ILE GLY SEQRES 3 B 153 PHE LYS LEU LEU SER LEU PHE LYS LEU THR GLU THR ASP SEQRES 4 B 153 GLN ARG ILE THR ILE GLY LEU ASN LEU PRO SER GLY GLU SEQRES 5 B 153 MET GLY ARG LYS ASP LEU ILE LYS ILE GLU ASN THR PHE SEQRES 6 B 153 LEU SER GLU ASP GLN VAL ASP GLN LEU ALA LEU TYR ALA SEQRES 7 B 153 PRO GLN ALA THR VAL ASN ARG ILE ASP ASN TYR GLU VAL SEQRES 8 B 153 VAL GLY LYS SER ARG PRO SER LEU PRO GLU ARG ILE ASP SEQRES 9 B 153 ASN VAL LEU VAL CYS PRO ASN SER ASN CYS ILE SER HIS SEQRES 10 B 153 ALA GLU PRO VAL SER SER SER PHE ALA VAL ARG LYS ARG SEQRES 11 B 153 ALA ASN ASP ILE ALA LEU LYS CYS LYS TYR CYS GLU LYS SEQRES 12 B 153 GLU PHE SER HIS ASN VAL VAL LEU ALA ASN HET ZN B 201 1 HETNAM ZN ZINC ION FORMUL 3 ZN ZN 2+ FORMUL 4 HOH *355(H2 O) HELIX 1 AA1 SER A 11 LEU A 15 5 5 HELIX 2 AA2 SER A 16 ASN A 33 1 18 HELIX 3 AA3 SER A 52 LEU A 66 1 15 HELIX 4 AA4 THR A 87 SER A 96 1 10 HELIX 5 AA5 GLY A 110 GLU A 117 1 8 HELIX 6 AA6 HIS A 134 GLY A 150 1 17 HELIX 7 AA7 GLY A 166 ALA A 177 1 12 HELIX 8 AA8 PRO A 189 ALA A 193 5 5 HELIX 9 AA9 PRO A 195 LYS A 205 1 11 HELIX 10 AB1 SER A 214 VAL A 222 5 9 HELIX 11 AB2 GLN A 231 LEU A 235 5 5 HELIX 12 AB3 ASP A 236 LYS A 244 1 9 HELIX 13 AB4 ALA A 245 VAL A 248 5 4 HELIX 14 AB5 ARG A 250 HIS A 255 5 6 HELIX 15 AB6 ALA A 274 ASP A 278 5 5 HELIX 16 AB7 TRP A 284 ASN A 305 1 22 HELIX 17 AB8 ILE B 25 PHE B 33 1 9 HELIX 18 AB9 SER B 67 GLN B 73 1 7 HELIX 19 AC1 CYS B 114 ALA B 118 5 5 HELIX 20 AC2 HIS B 147 LEU B 151 1 5 SHEET 1 AA1 4 SER A 69 SER A 74 0 SHEET 2 AA1 4 VAL A 43 PHE A 48 1 N SER A 46 O VAL A 71 SHEET 3 AA1 4 ALA A 101 HIS A 106 1 O VAL A 103 N CYS A 47 SHEET 4 AA1 4 VAL A 124 ASP A 129 1 O LEU A 125 N ILE A 102 SHEET 1 AA2 5 ALA A 208 LEU A 211 0 SHEET 2 AA2 5 ARG A 183 ILE A 187 1 N PHE A 186 O SER A 210 SHEET 3 AA2 5 HIS A 156 VAL A 160 1 N VAL A 157 O ARG A 183 SHEET 4 AA2 5 ILE A 224 MET A 227 1 O TYR A 226 N ALA A 158 SHEET 5 AA2 5 LYS A 262 LEU A 264 1 O LEU A 264 N LEU A 225 SHEET 1 AA3 5 ILE B 42 GLY B 45 0 SHEET 2 AA3 5 LEU B 58 GLU B 62 -1 O LYS B 60 N THR B 43 SHEET 3 AA3 5 GLY B 15 ASP B 19 -1 N ILE B 18 O ILE B 59 SHEET 4 AA3 5 THR B 82 ASP B 87 -1 O ILE B 86 N GLY B 15 SHEET 5 AA3 5 GLU B 90 VAL B 91 -1 O GLU B 90 N ASP B 87 SHEET 1 AA4 4 ARG B 102 ASP B 104 0 SHEET 2 AA4 4 SER B 124 LYS B 129 -1 O PHE B 125 N ILE B 103 SHEET 3 AA4 4 ILE B 134 CYS B 138 -1 O ALA B 135 N ARG B 128 SHEET 4 AA4 4 GLU B 144 SER B 146 -1 O PHE B 145 N LEU B 136 LINK SG CYS B 109 ZN ZN B 201 1555 1555 2.33 LINK SG CYS B 114 ZN ZN B 201 1555 1555 2.42 LINK SG CYS B 138 ZN ZN B 201 1555 1555 2.53 LINK SG CYS B 141 ZN ZN B 201 1555 1555 2.32 CISPEP 1 LEU A 267 PRO A 268 0 1.47 SITE 1 AC1 4 CYS B 109 CYS B 114 CYS B 138 CYS B 141 CRYST1 129.680 129.680 197.980 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007711 0.004452 0.000000 0.00000 SCALE2 0.000000 0.008904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005051 0.00000