HEADER TRANSFERASE 23-JUL-19 6KJP TITLE FUNCTIONAL AND STRUCTURAL INSIGHTS INTO THE UNUSUAL OXYANION HOLE-LIKE TITLE 2 GEOMETRY IN MACROLACTIN ACYLTRANSFERASE SELECTIVE FOR DICARBOXYLIC TITLE 3 ACYL DONORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MLNI; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JEOTGALIBACILLUS MARINUS; SOURCE 3 ORGANISM_TAXID: 86667; SOURCE 4 GENE: MLNI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.XIAO,S.DONG,Y.FENG,W.LI REVDAT 3 22-NOV-23 6KJP 1 REMARK REVDAT 2 16-DEC-20 6KJP 1 JRNL REVDAT 1 29-JUL-20 6KJP 0 JRNL AUTH F.XIAO,S.DONG,Y.LIU,Y.FENG,H.LI,C.H.YUN,Q.CUI,W.LI JRNL TITL STRUCTURAL BASIS OF SPECIFICITY FOR CARBOXYL-TERMINATED ACYL JRNL TITL 2 DONORS IN A BACTERIAL ACYLTRANSFERASE. JRNL REF J.AM.CHEM.SOC. V. 142 16031 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 32803979 JRNL DOI 10.1021/JACS.0C07331 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.2 REMARK 3 NUMBER OF REFLECTIONS : 20323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.7800 - 4.9638 0.99 1674 182 0.1758 0.2379 REMARK 3 2 4.9638 - 3.9404 1.00 1580 172 0.1487 0.1894 REMARK 3 3 3.9404 - 3.4424 0.98 1518 165 0.1516 0.2115 REMARK 3 4 3.4424 - 3.1277 0.91 1416 154 0.1944 0.2547 REMARK 3 5 3.1277 - 2.9035 0.87 1334 145 0.2088 0.2833 REMARK 3 6 2.9035 - 2.7324 0.85 1284 141 0.2158 0.2757 REMARK 3 7 2.7324 - 2.5955 0.83 1257 137 0.2247 0.2601 REMARK 3 8 2.5955 - 2.4825 0.83 1275 137 0.2422 0.3057 REMARK 3 9 2.4825 - 2.3870 0.81 1226 135 0.3144 0.3782 REMARK 3 10 2.3870 - 2.3046 0.78 1188 129 0.2522 0.3279 REMARK 3 11 2.3046 - 2.2325 0.77 1152 126 0.2631 0.3103 REMARK 3 12 2.2325 - 2.1687 0.76 1143 125 0.2800 0.3249 REMARK 3 13 2.1687 - 2.1116 0.76 1143 124 0.2743 0.3231 REMARK 3 14 2.1116 - 2.0601 0.75 1137 124 0.2798 0.3305 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8230 83.3418 124.2624 REMARK 3 T TENSOR REMARK 3 T11: 0.1333 T22: 0.2664 REMARK 3 T33: 0.2538 T12: -0.0029 REMARK 3 T13: -0.0509 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.0206 L22: 4.3659 REMARK 3 L33: 2.7672 L12: 1.4184 REMARK 3 L13: -0.3049 L23: -1.7017 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: -0.2348 S13: 0.1603 REMARK 3 S21: 0.3735 S22: -0.0116 S23: -0.6093 REMARK 3 S31: -0.1236 S32: 0.4210 S33: -0.0044 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 134 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9754 92.4328 111.4078 REMARK 3 T TENSOR REMARK 3 T11: 0.1787 T22: 0.1165 REMARK 3 T33: 0.1793 T12: -0.0512 REMARK 3 T13: 0.0003 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 1.3114 L22: 1.3356 REMARK 3 L33: 1.0904 L12: 0.0815 REMARK 3 L13: -0.0795 L23: -0.0170 REMARK 3 S TENSOR REMARK 3 S11: -0.1322 S12: 0.2095 S13: 0.2746 REMARK 3 S21: -0.2139 S22: 0.0848 S23: 0.0178 REMARK 3 S31: -0.1820 S32: 0.0201 S33: -0.0122 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 135 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6755 95.0858 96.0775 REMARK 3 T TENSOR REMARK 3 T11: 0.3457 T22: 0.2651 REMARK 3 T33: 0.2526 T12: -0.1082 REMARK 3 T13: -0.0872 T23: 0.0794 REMARK 3 L TENSOR REMARK 3 L11: 1.7804 L22: 2.6891 REMARK 3 L33: 1.3639 L12: -0.3399 REMARK 3 L13: 0.1032 L23: -0.5766 REMARK 3 S TENSOR REMARK 3 S11: -0.1630 S12: 0.6426 S13: 0.2986 REMARK 3 S21: -0.5611 S22: 0.0932 S23: 0.3321 REMARK 3 S31: -0.2308 S32: -0.0144 S33: -0.0510 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 235 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8195 101.9335 114.1569 REMARK 3 T TENSOR REMARK 3 T11: 0.2461 T22: 0.1567 REMARK 3 T33: 0.2451 T12: -0.0686 REMARK 3 T13: -0.0213 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 1.2818 L22: 1.3382 REMARK 3 L33: 0.9332 L12: 0.3363 REMARK 3 L13: 0.2313 L23: -0.1346 REMARK 3 S TENSOR REMARK 3 S11: -0.1254 S12: 0.1492 S13: 0.3497 REMARK 3 S21: -0.0272 S22: 0.0898 S23: 0.1556 REMARK 3 S31: -0.3915 S32: 0.2101 S33: 0.0008 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 236 THROUGH 283 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0524 84.9335 120.8981 REMARK 3 T TENSOR REMARK 3 T11: 0.1218 T22: 0.0939 REMARK 3 T33: 0.1437 T12: -0.0381 REMARK 3 T13: -0.0053 T23: -0.0505 REMARK 3 L TENSOR REMARK 3 L11: 1.9020 L22: 1.5977 REMARK 3 L33: 1.2874 L12: 0.3559 REMARK 3 L13: 0.1247 L23: -0.2719 REMARK 3 S TENSOR REMARK 3 S11: -0.0204 S12: -0.1371 S13: -0.0382 REMARK 3 S21: -0.0067 S22: 0.0819 S23: -0.0413 REMARK 3 S31: -0.0869 S32: -0.0916 S33: -0.0389 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 284 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8235 78.7321 108.1850 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.2263 REMARK 3 T33: 0.2401 T12: -0.0220 REMARK 3 T13: 0.0238 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.4175 L22: 0.5340 REMARK 3 L33: 0.8311 L12: -0.2185 REMARK 3 L13: 0.7228 L23: -0.0086 REMARK 3 S TENSOR REMARK 3 S11: -0.1261 S12: 0.3191 S13: -0.1154 REMARK 3 S21: -0.3269 S22: 0.0013 S23: -0.1645 REMARK 3 S31: 0.0211 S32: 0.1444 S33: -0.0385 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 324 THROUGH 364 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5177 82.8252 117.7622 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.1177 REMARK 3 T33: 0.2201 T12: 0.0055 REMARK 3 T13: -0.0136 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 2.3052 L22: 2.2792 REMARK 3 L33: 1.6741 L12: 0.2120 REMARK 3 L13: -0.1624 L23: -0.3186 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: 0.1408 S13: 0.0089 REMARK 3 S21: -0.0604 S22: -0.0055 S23: -0.1936 REMARK 3 S31: 0.0220 S32: 0.1132 S33: 0.0048 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20392 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 84.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.1 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.19200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 1.55000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6KJH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.1 M BIS REMARK 280 -TRIS, PH 6.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.82000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.82000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.82000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.82000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.82000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.82000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 569 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 617 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 ILE A 5 REMARK 465 SER A 6 REMARK 465 GLU A 365 REMARK 465 HIS A 366 REMARK 465 HIS A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 43 CG CD OE1 OE2 REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLN A 132 CG CD OE1 NE2 REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 HIS A 219 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 537 O HOH A 671 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 134 56.59 -105.25 REMARK 500 ILE A 192 -58.92 -129.92 REMARK 500 TYR A 231 22.34 -149.80 REMARK 500 LYS A 261 -119.71 59.72 REMARK 500 ASP A 308 -135.68 57.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 700 DISTANCE = 7.36 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D9F A 402 DBREF1 6KJP A 1 363 UNP A0A0U1X4V6_9BACL DBREF2 6KJP A A0A0U1X4V6 13 375 SEQADV 6KJP MET A -19 UNP A0A0U1X4V INITIATING METHIONINE SEQADV 6KJP GLY A -18 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP SER A -17 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP SER A -16 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A -15 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A -14 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A -13 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A -12 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A -11 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A -10 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP SER A -9 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP SER A -8 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP GLY A -7 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP LEU A -6 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP VAL A -5 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP PRO A -4 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP ARG A -3 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP GLY A -2 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP SER A -1 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A 0 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP LEU A 364 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP GLU A 365 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A 366 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A 367 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A 368 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A 369 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A 370 UNP A0A0U1X4V EXPRESSION TAG SEQADV 6KJP HIS A 371 UNP A0A0U1X4V EXPRESSION TAG SEQRES 1 A 391 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 391 LEU VAL PRO ARG GLY SER HIS MET LYS GLN THR ILE SER SEQRES 3 A 391 ASN PRO ALA PHE ASP MET LYS GLN ILE ASN ALA LEU ASN SEQRES 4 A 391 GLY HIS TYR GLN THR MET ILE ASP ASN GLY ASP LEU GLN SEQRES 5 A 391 CYS ALA SER TYR MET MET SER ARG GLY GLY GLU VAL PHE SEQRES 6 A 391 ALA ALA GLU SER LEU GLY GLU PHE THR GLY GLY GLN LYS SEQRES 7 A 391 GLU LYS GLN THR PHE GLN LEU ASP THR ILE ARG GLU ILE SEQRES 8 A 391 GLY SER LEU THR LYS VAL PHE THR ALA VAL ALA VAL MET SEQRES 9 A 391 GLN LEU VAL GLU LYS GLY LEU LEU ASP LEU LYS MET PRO SEQRES 10 A 391 VAL LYS LEU ILE LEU PRO ALA PHE ASP LYS PRO GLY PHE SEQRES 11 A 391 GLY GLU ILE LYS ILE LEU HIS LEU LEU THR HIS THR ALA SEQRES 12 A 391 GLY LEU SER PHE GLU LEU ASP ILE GLN LYS ALA GLU GLY SEQRES 13 A 391 ILE ASP LEU THR ASN GLU GLU GLU TRP ILE ASN TYR LEU SEQRES 14 A 391 VAL SER THR PRO LEU GLU TYR GLY VAL ASP GLU ALA TRP SEQRES 15 A 391 ASN TYR SER ARG THR GLY PHE VAL ILE LEU GLY ILE ILE SEQRES 16 A 391 ILE SER LYS VAL THR GLY VAL SER TYR GLU GLN TYR VAL SEQRES 17 A 391 THR LYS HIS ILE ILE GLU ALA LEU GLY LEU GLU ARG THR SEQRES 18 A 391 TYR PHE TYR VAL PRO ASP THR LEU LYS GLU GLU VAL CYS SEQRES 19 A 391 VAL ILE SER GLU HIS GLU CYS VAL GLN LEU GLU LYS SER SEQRES 20 A 391 HIS HIS PRO TYR PHE PRO ASN LYS ALA THR SER GLY LEU SEQRES 21 A 391 TYR SER SER LEU ARG ASP ILE TRP LYS LEU ALA GLU MET SEQRES 22 A 391 PHE ARG ASN LYS GLY ARG LEU LYS ASP LYS LYS LEU LEU SEQRES 23 A 391 GLY ARG LYS THR VAL GLU ALA MET LEU ARG ASN GLN ILE SEQRES 24 A 391 LYS PRO GLY LEU PRO PHE TYR PHE PHE GLY ALA PRO ARG SEQRES 25 A 391 GLU GLU GLY GLY PHE GLY LEU GLY ILE ASN LEU TRP PRO SEQRES 26 A 391 ALA GLY ASP HIS TYR PHE MET THR GLU GLY THR PHE SER SEQRES 27 A 391 HIS LEU GLY MET GLY TRP CYS GLY MET PHE SER ASP PRO SEQRES 28 A 391 ALA GLU ASP PHE THR TYR VAL PHE PHE THR PRO ILE SER SEQRES 29 A 391 GLU PHE HIS PRO HIS ALA VAL LEU THR PRO LEU ASN ILE SEQRES 30 A 391 VAL TRP ALA GLY ILE GLU LEU GLU HIS HIS HIS HIS HIS SEQRES 31 A 391 HIS HET SO4 A 401 5 HET D9F A 402 29 HETNAM SO4 SULFATE ION HETNAM D9F (3~{Z},5~{E},8~{S},9~{E},11~{E},14~{S},16~{R},17~{Z}, HETNAM 2 D9F 19~{E},24~{R})-24-METHYL-8,14,16-TRIS(OXIDANYL)-1- HETNAM 3 D9F OXACYCLOTETRACOSA-3,5,9,11,17,19-HEXAEN-2-ONE FORMUL 2 SO4 O4 S 2- FORMUL 3 D9F C24 H34 O5 FORMUL 4 HOH *200(H2 O) HELIX 1 AA1 ASP A 11 ASN A 28 1 18 HELIX 2 AA2 LEU A 74 LYS A 89 1 16 HELIX 3 AA3 PRO A 97 LEU A 102 1 6 HELIX 4 AA4 PRO A 103 ASP A 106 5 4 HELIX 5 AA5 GLY A 109 ILE A 113 5 5 HELIX 6 AA6 LYS A 114 THR A 120 1 7 HELIX 7 AA7 ASN A 141 VAL A 150 1 10 HELIX 8 AA8 SER A 165 GLY A 181 1 17 HELIX 9 AA9 SER A 183 ILE A 192 1 10 HELIX 10 AB1 PRO A 206 VAL A 213 5 8 HELIX 11 AB2 SER A 217 GLU A 225 1 9 HELIX 12 AB3 SER A 243 ASN A 256 1 14 HELIX 13 AB4 GLY A 267 LEU A 275 1 9 HELIX 14 AB5 PRO A 331 GLU A 333 5 3 HELIX 15 AB6 HIS A 347 LEU A 352 1 6 HELIX 16 AB7 LEU A 352 ALA A 360 1 9 SHEET 1 AA1 6 GLN A 61 THR A 62 0 SHEET 2 AA1 6 GLU A 43 PHE A 53 -1 N PHE A 53 O GLN A 61 SHEET 3 AA1 6 CYS A 33 ARG A 40 -1 N ALA A 34 O LEU A 50 SHEET 4 AA1 6 PHE A 335 PHE A 340 -1 O PHE A 340 N SER A 35 SHEET 5 AA1 6 CYS A 325 ASP A 330 -1 N PHE A 328 O TYR A 337 SHEET 6 AA1 6 PHE A 317 GLY A 321 -1 N PHE A 317 O SER A 329 SHEET 1 AA2 2 ARG A 69 GLU A 70 0 SHEET 2 AA2 2 TYR A 241 SER A 242 -1 O SER A 242 N ARG A 69 SHEET 1 AA3 3 TRP A 162 ASN A 163 0 SHEET 2 AA3 3 PHE A 285 PHE A 287 1 O TYR A 286 N TRP A 162 SHEET 3 AA3 3 ALA A 290 PRO A 291 -1 O ALA A 290 N PHE A 287 SHEET 1 AA4 2 ARG A 259 LEU A 260 0 SHEET 2 AA4 2 LYS A 263 LYS A 264 -1 O LYS A 263 N LEU A 260 CISPEP 1 TRP A 304 PRO A 305 0 1.89 CISPEP 2 GLY A 323 TRP A 324 0 4.83 SITE 1 AC1 8 SER A 73 LYS A 76 TYR A 164 ARG A 166 SITE 2 AC1 8 THR A 237 D9F A 402 HOH A 504 HOH A 505 SITE 1 AC2 10 SER A 73 TYR A 164 PHE A 287 PHE A 288 SITE 2 AC2 10 ARG A 292 TRP A 304 MET A 322 TRP A 324 SITE 3 AC2 10 PHE A 346 SO4 A 401 CRYST1 119.640 119.640 51.780 90.00 90.00 90.00 P 4 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019313 0.00000