HEADER VIRAL PROTEIN 23-JUL-19 6KK2 TITLE CRYSTAL STRUCTURE OF ZIKA NS2B-NS3 PROTEASE WITH COMPOUND 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NS2B COFACTOR; COMPND 5 EC: 3.4.21.91,3.6.1.15,3.6.4.13,2.1.1.56,2.1.1.57,2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NS3 PROTEASE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 9 ORGANISM_COMMON: ZIKV; SOURCE 10 ORGANISM_TAXID: 64320; SOURCE 11 STRAIN: MR 766; SOURCE 12 GENE: GP1, A2G93_63394GPGP1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEASE, PROTEASE INHIBITOR COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.QUEK REVDAT 4 16-OCT-24 6KK2 1 REMARK REVDAT 3 22-NOV-23 6KK2 1 REMARK REVDAT 2 19-AUG-20 6KK2 1 JRNL REVDAT 1 17-JUN-20 6KK2 0 JRNL AUTH N.J.BRAUN,J.P.QUEK,S.HUBER,J.KOURETOVA,D.ROGGE, JRNL AUTH 2 H.LANG-HENKEL,E.Z.K.CHEONG,B.L.A.CHEW,A.HEINE,D.LUO, JRNL AUTH 3 T.STEINMETZER JRNL TITL STRUCTURE-BASED MACROCYCLIZATION OF SUBSTRATE ANALOGUE JRNL TITL 2 NS2B-NS3 PROTEASE INHIBITORS OF ZIKA, WEST NILE AND DENGUE JRNL TITL 3 VIRUSES. JRNL REF CHEMMEDCHEM V. 15 1439 2020 JRNL REFN ESSN 1860-7187 JRNL PMID 32501637 JRNL DOI 10.1002/CMDC.202000237 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 13825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0900 - 2.0200 0.00 0 61 0.2350 0.2980 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.3506 9.8197 -18.6458 REMARK 3 T TENSOR REMARK 3 T11: 0.3654 T22: 0.4122 REMARK 3 T33: 0.3471 T12: 0.0458 REMARK 3 T13: -0.0196 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 4.6786 L22: 8.6009 REMARK 3 L33: 7.5835 L12: 0.4840 REMARK 3 L13: 0.5838 L23: 3.5500 REMARK 3 S TENSOR REMARK 3 S11: 0.4446 S12: 0.5030 S13: -0.0034 REMARK 3 S21: 0.5306 S22: -0.6113 S23: 0.5770 REMARK 3 S31: 0.0765 S32: -1.2497 S33: -0.2060 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6585 -5.5092 -19.1788 REMARK 3 T TENSOR REMARK 3 T11: 0.6507 T22: 0.5829 REMARK 3 T33: 0.4215 T12: 0.0936 REMARK 3 T13: 0.1105 T23: -0.0952 REMARK 3 L TENSOR REMARK 3 L11: 2.3861 L22: 1.8275 REMARK 3 L33: 2.4380 L12: 0.2414 REMARK 3 L13: 0.7000 L23: 0.4062 REMARK 3 S TENSOR REMARK 3 S11: 0.0773 S12: 0.0677 S13: 0.1458 REMARK 3 S21: -0.6183 S22: -0.0970 S23: -0.3504 REMARK 3 S31: 0.0861 S32: 0.6056 S33: -0.0149 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 17 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3025 9.1963 -17.7159 REMARK 3 T TENSOR REMARK 3 T11: 0.5748 T22: 0.3797 REMARK 3 T33: 0.3513 T12: -0.0660 REMARK 3 T13: -0.0143 T23: 0.0337 REMARK 3 L TENSOR REMARK 3 L11: 3.7150 L22: 2.7609 REMARK 3 L33: 3.9284 L12: -0.2111 REMARK 3 L13: 1.8191 L23: 1.4429 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: 0.0639 S13: 0.8887 REMARK 3 S21: -0.4360 S22: -0.2267 S23: 0.8612 REMARK 3 S31: 0.1585 S32: -0.8072 S33: -0.0213 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4029 13.4744 -15.3792 REMARK 3 T TENSOR REMARK 3 T11: 0.4137 T22: 0.2530 REMARK 3 T33: 0.3617 T12: -0.0096 REMARK 3 T13: 0.0120 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 3.5078 L22: 4.1960 REMARK 3 L33: 1.9677 L12: 2.1215 REMARK 3 L13: -0.6476 L23: -0.3926 REMARK 3 S TENSOR REMARK 3 S11: 0.4675 S12: -0.1662 S13: 0.5228 REMARK 3 S21: 0.1059 S22: -0.4797 S23: 0.5048 REMARK 3 S31: -0.1403 S32: -0.2900 S33: -0.1204 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4816 7.2599 -9.3768 REMARK 3 T TENSOR REMARK 3 T11: 0.3653 T22: 0.2792 REMARK 3 T33: 0.3461 T12: -0.0156 REMARK 3 T13: 0.0505 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 3.2324 L22: 2.1229 REMARK 3 L33: 2.5464 L12: -0.2661 REMARK 3 L13: -0.3877 L23: 0.4891 REMARK 3 S TENSOR REMARK 3 S11: -0.2794 S12: 0.1320 S13: 0.3689 REMARK 3 S21: -0.0267 S22: 0.3076 S23: 0.1519 REMARK 3 S31: -0.6137 S32: -0.1358 S33: -0.0857 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.5754 2.8378 -4.6530 REMARK 3 T TENSOR REMARK 3 T11: 0.4487 T22: 0.2312 REMARK 3 T33: 0.3258 T12: -0.0274 REMARK 3 T13: 0.0613 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 3.8585 L22: 1.6808 REMARK 3 L33: 2.6897 L12: 0.1976 REMARK 3 L13: -0.1906 L23: -0.1167 REMARK 3 S TENSOR REMARK 3 S11: 0.4606 S12: 0.3627 S13: -0.1519 REMARK 3 S21: 0.4616 S22: -0.1336 S23: 0.1198 REMARK 3 S31: -0.3156 S32: 0.0213 S33: -0.0628 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 80 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2432 -9.0408 -16.4069 REMARK 3 T TENSOR REMARK 3 T11: 0.4783 T22: 0.3151 REMARK 3 T33: 0.3520 T12: -0.0359 REMARK 3 T13: -0.0027 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 1.2192 L22: 1.6301 REMARK 3 L33: 2.3933 L12: 0.1816 REMARK 3 L13: -0.7801 L23: 0.1309 REMARK 3 S TENSOR REMARK 3 S11: -0.2750 S12: 0.6781 S13: -0.2538 REMARK 3 S21: 0.1477 S22: -0.4323 S23: 0.3224 REMARK 3 S31: 1.0155 S32: -0.4211 S33: 0.1404 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3591 5.3151 -26.4824 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.3495 REMARK 3 T33: 0.3910 T12: 0.0404 REMARK 3 T13: 0.0235 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 3.0707 L22: 4.8296 REMARK 3 L33: 2.7141 L12: 0.5282 REMARK 3 L13: -0.8925 L23: 0.4550 REMARK 3 S TENSOR REMARK 3 S11: 0.3786 S12: 0.9824 S13: 0.3417 REMARK 3 S21: -0.4883 S22: -0.3957 S23: -0.4224 REMARK 3 S31: -0.0564 S32: -0.3296 S33: -0.1183 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9629 -4.4839 -20.1229 REMARK 3 T TENSOR REMARK 3 T11: 0.3513 T22: 0.3926 REMARK 3 T33: 0.3253 T12: -0.0217 REMARK 3 T13: 0.0480 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 1.7722 L22: 1.3571 REMARK 3 L33: 0.6373 L12: 0.5285 REMARK 3 L13: -0.0793 L23: 0.9784 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: 0.2920 S13: -0.1139 REMARK 3 S21: -0.1051 S22: -0.0048 S23: 0.0879 REMARK 3 S31: -0.1326 S32: 0.0592 S33: 0.0254 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7877 -4.2829 -17.8777 REMARK 3 T TENSOR REMARK 3 T11: 0.4060 T22: 0.2470 REMARK 3 T33: 0.3018 T12: -0.0553 REMARK 3 T13: 0.0599 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 4.0803 L22: 2.6920 REMARK 3 L33: 3.7498 L12: -0.5934 REMARK 3 L13: 0.2861 L23: 1.4428 REMARK 3 S TENSOR REMARK 3 S11: 0.1687 S12: -0.2471 S13: 0.1014 REMARK 3 S21: -0.3676 S22: 0.0240 S23: 0.0042 REMARK 3 S31: -0.0742 S32: 0.2585 S33: -0.1761 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013051. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13825 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 42.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 13.70 REMARK 200 R MERGE (I) : 0.19600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.59300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 ACETATE TRIHYDRATE 4.6, 25% PEG 4000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.84450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 161.76675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.92225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 107.84450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.92225 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 161.76675 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 323 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 157 CG CD CE NZ REMARK 470 ASN B 158 CG OD1 ND2 REMARK 470 LYS B 169 CG CD CE NZ REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 302 O HOH B 303 1.93 REMARK 500 O LYS B 169 O HOH B 301 1.95 REMARK 500 O THR B 18 O HOH B 302 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 39.11 -95.49 REMARK 500 LEU B 30 -167.03 -112.08 REMARK 500 ASP B 90 0.53 -65.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue D9U B 201 DBREF 6KK2 A 46 96 UNP Q32ZE1 POLG_ZIKV 1414 1464 DBREF1 6KK2 B 1 177 UNP A0A142IX72_ZIKV DBREF2 6KK2 B A0A142IX72 1497 1673 SEQADV 6KK2 MET A 44 UNP Q32ZE1 INITIATING METHIONINE SEQADV 6KK2 THR A 45 UNP Q32ZE1 EXPRESSION TAG SEQADV 6KK2 GLY B 0 UNP A0A142IX7 EXPRESSION TAG SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET D9U B 201 47 HETNAM D9U 1-[(10~{S},17~{S},20~{S})-17,20-BIS(4-AZANYLBUTYL)-4,9, HETNAM 2 D9U 16,19,22-PENTAKIS(OXIDANYLIDENE)-3,8,15,18,21- HETNAM 3 D9U PENTAZABICYCLO[22.2.2]OCTACOSA-1(27),24(28),25-TRIEN- HETNAM 4 D9U 10-YL]GUANIDINE FORMUL 3 D9U C32 H54 N10 O5 FORMUL 4 HOH *38(H2 O) HELIX 1 AA1 MET B 49 LYS B 54 1 6 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 8 GLY B 63 LEU B 65 0 SHEET 2 AA1 8 LEU B 58 SER B 60 -1 N LEU B 58 O LEU B 65 SHEET 3 AA1 8 MET A 51 GLY A 57 1 N ILE A 53 O ARG B 59 SHEET 4 AA1 8 GLY B 21 THR B 27 -1 O MET B 26 N TYR A 52 SHEET 5 AA1 8 THR B 34 GLN B 42 -1 O MET B 41 N GLY B 21 SHEET 6 AA1 8 VAL B 45 THR B 48 -1 O HIS B 47 N VAL B 40 SHEET 7 AA1 8 LEU B 76 TYR B 79 -1 O VAL B 77 N THR B 48 SHEET 8 AA1 8 PRO B 67 ASP B 71 -1 N TRP B 69 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N VAL B 95 O THR B 111 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O PRO B 138 N LEU B 98 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SSBOND 1 CYS B 143 CYS B 143 1555 8444 2.06 SITE 1 AC1 14 THR A 68 GLY A 82 ASP A 83 PHE A 84 SITE 2 AC1 14 HIS B 51 ASP B 129 TYR B 130 SER B 135 SITE 3 AC1 14 GLY B 151 ASN B 152 GLY B 153 VAL B 155 SITE 4 AC1 14 TYR B 161 HOH B 304 CRYST1 42.413 42.413 215.689 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023578 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023578 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004636 0.00000