HEADER VIRAL PROTEIN 23-JUL-19 6KK6 TITLE CRYSTAL STRUCTURE OF ZIKA NS2B-NS3 PROTEASE WITH COMPOUND 16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE SUBUNIT NS2B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NS2B COFACTOR; COMPND 5 EC: 3.4.21.91,3.6.1.15,3.6.4.13,2.1.1.56,2.1.1.57,2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NS3 PROTEASE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZIKA VIRUS; SOURCE 3 ORGANISM_COMMON: ZIKV; SOURCE 4 ORGANISM_TAXID: 64320; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ZIKA VIRUS (STRAIN MR 766); SOURCE 9 ORGANISM_COMMON: ZIKV; SOURCE 10 ORGANISM_TAXID: 64320; SOURCE 11 STRAIN: MR 766; SOURCE 12 GENE: GP1, A2G93_63394GPGP1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL PROTEASE, PROTEASE INHIBITOR COMPLEX, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.P.QUEK REVDAT 3 22-NOV-23 6KK6 1 REMARK REVDAT 2 19-AUG-20 6KK6 1 JRNL REVDAT 1 17-JUN-20 6KK6 0 JRNL AUTH N.J.BRAUN,J.P.QUEK,S.HUBER,J.KOURETOVA,D.ROGGE, JRNL AUTH 2 H.LANG-HENKEL,E.Z.K.CHEONG,B.L.A.CHEW,A.HEINE,D.LUO, JRNL AUTH 3 T.STEINMETZER JRNL TITL STRUCTURE-BASED MACROCYCLIZATION OF SUBSTRATE ANALOGUE JRNL TITL 2 NS2B-NS3 PROTEASE INHIBITORS OF ZIKA, WEST NILE AND DENGUE JRNL TITL 3 VIRUSES. JRNL REF CHEMMEDCHEM V. 15 1439 2020 JRNL REFN ESSN 1860-7187 JRNL PMID 32501637 JRNL DOI 10.1002/CMDC.202000237 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 1.8054 - 1.7400 0.00 2357 121 0.2250 0.2550 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.3430 -31.7553 4.4508 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.2365 REMARK 3 T33: 0.3801 T12: -0.0108 REMARK 3 T13: -0.0525 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 2.2856 L22: 8.0195 REMARK 3 L33: 1.1478 L12: -2.9811 REMARK 3 L13: -0.6279 L23: -0.1531 REMARK 3 S TENSOR REMARK 3 S11: 0.1331 S12: 0.4005 S13: -0.3317 REMARK 3 S21: -0.7509 S22: -0.1639 S23: -0.2308 REMARK 3 S31: 0.5928 S32: -0.0442 S33: -0.2107 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0587 -27.9789 19.5001 REMARK 3 T TENSOR REMARK 3 T11: 0.4618 T22: 0.3408 REMARK 3 T33: 0.2816 T12: 0.0103 REMARK 3 T13: 0.0549 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 1.1562 L22: 7.4006 REMARK 3 L33: 1.1456 L12: -2.6983 REMARK 3 L13: -0.5379 L23: 2.1919 REMARK 3 S TENSOR REMARK 3 S11: -0.0337 S12: 0.4038 S13: -0.1814 REMARK 3 S21: -0.0110 S22: -0.4277 S23: 0.5268 REMARK 3 S31: 0.4144 S32: -0.5074 S33: 0.3268 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8282 -10.0036 22.2057 REMARK 3 T TENSOR REMARK 3 T11: 0.3733 T22: 0.2760 REMARK 3 T33: 0.2087 T12: 0.0495 REMARK 3 T13: -0.0336 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 6.0540 L22: 6.8945 REMARK 3 L33: 7.7829 L12: 5.2712 REMARK 3 L13: -3.0197 L23: -5.6473 REMARK 3 S TENSOR REMARK 3 S11: 0.1428 S12: -0.6234 S13: -0.3664 REMARK 3 S21: 0.6229 S22: -0.4165 S23: -0.6217 REMARK 3 S31: 0.1098 S32: 0.5117 S33: 0.3640 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1150 -2.7766 1.0340 REMARK 3 T TENSOR REMARK 3 T11: 0.2910 T22: 0.2684 REMARK 3 T33: 0.2531 T12: -0.0115 REMARK 3 T13: -0.0554 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 6.9968 L22: 5.9352 REMARK 3 L33: 3.9444 L12: 5.9794 REMARK 3 L13: 4.4633 L23: 4.6984 REMARK 3 S TENSOR REMARK 3 S11: -0.3041 S12: 0.5461 S13: 0.6053 REMARK 3 S21: -0.6622 S22: 0.0932 S23: 0.8237 REMARK 3 S31: -0.4387 S32: -0.1562 S33: 0.2356 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8691 -28.9102 11.9138 REMARK 3 T TENSOR REMARK 3 T11: 0.2850 T22: 0.2394 REMARK 3 T33: 0.2765 T12: -0.0258 REMARK 3 T13: -0.0093 T23: 0.0239 REMARK 3 L TENSOR REMARK 3 L11: 7.2451 L22: 2.3871 REMARK 3 L33: 8.6403 L12: -2.4451 REMARK 3 L13: -4.1198 L23: 2.9659 REMARK 3 S TENSOR REMARK 3 S11: -0.1033 S12: 0.0433 S13: -0.7838 REMARK 3 S21: 0.2318 S22: -0.0779 S23: 0.2869 REMARK 3 S31: 0.7809 S32: -0.6577 S33: -0.0332 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8514 -24.9973 6.5034 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1304 REMARK 3 T33: 0.1706 T12: 0.0096 REMARK 3 T13: -0.0129 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 5.6835 L22: 5.5959 REMARK 3 L33: 5.9558 L12: 0.8243 REMARK 3 L13: 0.8328 L23: -0.8679 REMARK 3 S TENSOR REMARK 3 S11: 0.0400 S12: 0.1080 S13: -0.5095 REMARK 3 S21: -0.2628 S22: -0.0149 S23: 0.1185 REMARK 3 S31: 0.4135 S32: 0.0857 S33: 0.0578 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6940 -26.6996 2.7035 REMARK 3 T TENSOR REMARK 3 T11: 0.1956 T22: 0.2492 REMARK 3 T33: 0.3184 T12: -0.0226 REMARK 3 T13: -0.0741 T23: -0.0492 REMARK 3 L TENSOR REMARK 3 L11: 7.2784 L22: 6.4932 REMARK 3 L33: 5.8959 L12: -1.6253 REMARK 3 L13: 1.2186 L23: -1.3498 REMARK 3 S TENSOR REMARK 3 S11: 0.2618 S12: -0.0486 S13: -0.9617 REMARK 3 S21: -0.2887 S22: -0.0219 S23: 0.6682 REMARK 3 S31: 0.4318 S32: -0.3029 S33: -0.1692 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1259 -13.5749 12.4891 REMARK 3 T TENSOR REMARK 3 T11: 0.1897 T22: 0.2430 REMARK 3 T33: 0.2858 T12: 0.0442 REMARK 3 T13: 0.0466 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 1.8153 L22: 3.7060 REMARK 3 L33: 3.0428 L12: 0.7577 REMARK 3 L13: 1.3602 L23: 1.4700 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.2357 S13: 0.0262 REMARK 3 S21: 0.2889 S22: -0.1088 S23: 0.5043 REMARK 3 S31: -0.0279 S32: -0.3341 S33: 0.1224 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.8692 -20.9425 16.7295 REMARK 3 T TENSOR REMARK 3 T11: 0.2523 T22: 0.2233 REMARK 3 T33: 0.1965 T12: 0.0121 REMARK 3 T13: -0.0175 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 4.7784 L22: 5.0645 REMARK 3 L33: 9.8999 L12: -4.4289 REMARK 3 L13: -5.3795 L23: 6.8675 REMARK 3 S TENSOR REMARK 3 S11: -0.3032 S12: -0.2601 S13: -0.0772 REMARK 3 S21: 0.4651 S22: 0.3131 S23: -0.2960 REMARK 3 S31: 0.3346 S32: 0.3644 S33: -0.0531 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2012 -7.1713 17.1399 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.1958 REMARK 3 T33: 0.1308 T12: 0.0517 REMARK 3 T13: 0.0307 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 3.2543 L22: 5.0860 REMARK 3 L33: 8.0361 L12: 2.5781 REMARK 3 L13: 1.4738 L23: -3.4948 REMARK 3 S TENSOR REMARK 3 S11: -0.1748 S12: -0.0864 S13: 0.2554 REMARK 3 S21: 0.2924 S22: -0.2204 S23: -0.6559 REMARK 3 S31: -0.0040 S32: 0.2354 S33: 0.2805 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.1202 -11.4800 14.4427 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1868 REMARK 3 T33: 0.1417 T12: 0.0119 REMARK 3 T13: -0.0117 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.5266 L22: 5.4050 REMARK 3 L33: 3.9187 L12: -0.1914 REMARK 3 L13: -0.7192 L23: -0.0739 REMARK 3 S TENSOR REMARK 3 S11: -0.0754 S12: -0.1813 S13: 0.0825 REMARK 3 S21: 0.3912 S22: 0.0369 S23: 0.3444 REMARK 3 S31: -0.1590 S32: -0.1691 S33: 0.0102 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6182 -9.1870 9.7567 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.1572 REMARK 3 T33: 0.1244 T12: 0.0146 REMARK 3 T13: -0.0115 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 7.6912 L22: 5.4864 REMARK 3 L33: 5.0610 L12: 2.8978 REMARK 3 L13: -4.4671 L23: -1.2482 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: -0.0803 S13: 0.2439 REMARK 3 S21: 0.0685 S22: 0.0431 S23: 0.0609 REMARK 3 S31: -0.1267 S32: 0.0973 S33: -0.0381 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-19. REMARK 100 THE DEPOSITION ID IS D_1300013106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95373 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25997 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.91200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5GPI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE, 5% PROPANOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.28500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.67500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.32550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.67500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.28500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.32550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 THR A 45 REMARK 465 GLY A 46 REMARK 465 LYS A 47 REMARK 465 SER A 48 REMARK 465 VAL A 49 REMARK 465 GLU A 88 REMARK 465 GLU A 89 REMARK 465 ASP A 90 REMARK 465 GLY A 91 REMARK 465 PRO A 92 REMARK 465 PRO A 93 REMARK 465 MET A 94 REMARK 465 ARG A 95 REMARK 465 GLU A 96 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 TRP B 5 REMARK 465 ASP B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 PRO B 10 REMARK 465 LYS B 11 REMARK 465 GLU B 12 REMARK 465 VAL B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLY B 16 REMARK 465 GLU B 17 REMARK 465 ARG B 170 REMARK 465 GLU B 171 REMARK 465 GLU B 172 REMARK 465 GLU B 173 REMARK 465 THR B 174 REMARK 465 PRO B 175 REMARK 465 VAL B 176 REMARK 465 GLU B 177 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 64 CG OD1 OD2 REMARK 470 ARG B 29 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 30 CG CD1 CD2 REMARK 470 LEU B 31 CG CD1 CD2 REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ARG B 105 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 169 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 323 O HOH B 348 1.87 REMARK 500 OE1 GLU A 62 O HOH A 201 1.98 REMARK 500 NZ LYS B 157 O HOH B 301 2.02 REMARK 500 OE1 GLN B 42 O HOH B 302 2.11 REMARK 500 O HOH A 210 O HOH B 351 2.17 REMARK 500 O HOH B 349 O HOH B 368 2.17 REMARK 500 O LYS B 169 O HOH B 303 2.18 REMARK 500 O HOH B 302 O HOH B 334 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 219 O HOH B 337 3545 1.98 REMARK 500 O HOH B 351 O HOH B 357 3545 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 29 -150.40 55.80 REMARK 500 CYS B 80 -9.69 80.00 REMARK 500 LEU B 92 -41.91 -132.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DV0 B 202 DBREF 6KK6 A 46 96 UNP Q32ZE1 POLG_ZIKV 1414 1464 DBREF1 6KK6 B 1 177 UNP A0A142IX72_ZIKV DBREF2 6KK6 B A0A142IX72 1497 1673 SEQADV 6KK6 MET A 44 UNP Q32ZE1 INITIATING METHIONINE SEQADV 6KK6 THR A 45 UNP Q32ZE1 EXPRESSION TAG SEQADV 6KK6 GLY B 0 UNP A0A142IX7 EXPRESSION TAG SEQRES 1 A 53 MET THR GLY LYS SER VAL ASP MET TYR ILE GLU ARG ALA SEQRES 2 A 53 GLY ASP ILE THR TRP GLU LYS ASP ALA GLU VAL THR GLY SEQRES 3 A 53 ASN SER PRO ARG LEU ASP VAL ALA LEU ASP GLU SER GLY SEQRES 4 A 53 ASP PHE SER LEU VAL GLU GLU ASP GLY PRO PRO MET ARG SEQRES 5 A 53 GLU SEQRES 1 B 178 GLY SER GLY ALA LEU TRP ASP VAL PRO ALA PRO LYS GLU SEQRES 2 B 178 VAL LYS LYS GLY GLU THR THR ASP GLY VAL TYR ARG VAL SEQRES 3 B 178 MET THR ARG ARG LEU LEU GLY SER THR GLN VAL GLY VAL SEQRES 4 B 178 GLY VAL MET GLN GLU GLY VAL PHE HIS THR MET TRP HIS SEQRES 5 B 178 VAL THR LYS GLY ALA ALA LEU ARG SER GLY GLU GLY ARG SEQRES 6 B 178 LEU ASP PRO TYR TRP GLY ASP VAL LYS GLN ASP LEU VAL SEQRES 7 B 178 SER TYR CYS GLY PRO TRP LYS LEU ASP ALA ALA TRP ASP SEQRES 8 B 178 GLY LEU SER GLU VAL GLN LEU LEU ALA VAL PRO PRO GLY SEQRES 9 B 178 GLU ARG ALA LYS ASN ILE GLN THR LEU PRO GLY ILE PHE SEQRES 10 B 178 LYS THR LYS ASP GLY ASP ILE GLY ALA VAL ALA LEU ASP SEQRES 11 B 178 TYR PRO ALA GLY THR SER GLY SER PRO ILE LEU ASP LYS SEQRES 12 B 178 CYS GLY ARG VAL ILE GLY LEU TYR GLY ASN GLY VAL VAL SEQRES 13 B 178 ILE LYS ASN GLY SER TYR VAL SER ALA ILE THR GLN GLY SEQRES 14 B 178 LYS ARG GLU GLU GLU THR PRO VAL GLU HET SO4 A 101 5 HET GOL B 201 6 HET DV0 B 202 46 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM DV0 1-[(5~{R},8~{R},15~{S},18~{S})-15,18-BIS(4- HETNAM 2 DV0 AZANYLBUTYL)-5-METHYL-4,7,14,17,20- HETNAM 3 DV0 PENTAKIS(OXIDANYLIDENE)-3,6,13,16,19- HETNAM 4 DV0 PENTAZABICYCLO[20.3.1]HEXACOSA-1(25),22(26),23-TRIEN- HETNAM 5 DV0 8-YL]GUANIDINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 O4 S 2- FORMUL 4 GOL C3 H8 O3 FORMUL 5 DV0 C31 H52 N10 O5 FORMUL 6 HOH *99(H2 O) HELIX 1 AA1 TRP B 50 LYS B 54 1 5 HELIX 2 AA2 PRO B 131 SER B 135 5 5 SHEET 1 AA1 6 MET A 51 GLY A 57 0 SHEET 2 AA1 6 GLY B 21 THR B 27 -1 O MET B 26 N TYR A 52 SHEET 3 AA1 6 THR B 34 GLN B 42 -1 O GLY B 37 N VAL B 25 SHEET 4 AA1 6 VAL B 45 MET B 49 -1 O VAL B 45 N GLN B 42 SHEET 5 AA1 6 LEU B 76 TYR B 79 -1 O TYR B 79 N PHE B 46 SHEET 6 AA1 6 PRO B 67 ASP B 71 -1 N TRP B 69 O SER B 78 SHEET 1 AA2 5 GLU A 66 VAL A 67 0 SHEET 2 AA2 5 LYS B 107 THR B 111 1 O GLN B 110 N GLU A 66 SHEET 3 AA2 5 VAL B 95 ALA B 99 -1 N LEU B 97 O ILE B 109 SHEET 4 AA2 5 PRO B 138 LEU B 140 -1 O LEU B 140 N GLN B 96 SHEET 5 AA2 5 VAL B 146 LEU B 149 -1 O GLY B 148 N ILE B 139 SHEET 1 AA3 6 PHE A 84 LEU A 86 0 SHEET 2 AA3 6 ARG A 73 LEU A 78 -1 N ALA A 77 O SER A 85 SHEET 3 AA3 6 GLY B 114 THR B 118 1 O LYS B 117 N LEU A 74 SHEET 4 AA3 6 GLY B 121 VAL B 126 -1 O ILE B 123 N PHE B 116 SHEET 5 AA3 6 TYR B 161 ALA B 164 -1 O SER B 163 N VAL B 126 SHEET 6 AA3 6 GLY B 153 VAL B 155 -1 N VAL B 154 O VAL B 162 SHEET 1 AA4 2 LEU B 58 SER B 60 0 SHEET 2 AA4 2 GLY B 63 LEU B 65 -1 O LEU B 65 N LEU B 58 SITE 1 AC1 5 GLU A 62 ARG A 73 HOH A 201 LYS B 117 SITE 2 AC1 5 ASP B 122 SITE 1 AC2 6 ALA B 88 TRP B 89 ILE B 123 GLY B 124 SITE 2 AC2 6 ILE B 147 ILE B 165 SITE 1 AC3 26 GLY A 82 ASP A 83 PHE A 84 TRP B 50 SITE 2 AC3 26 HIS B 51 GLY B 70 ASP B 71 VAL B 72 SITE 3 AC3 26 ASP B 129 TYR B 130 ALA B 132 SER B 135 SITE 4 AC3 26 GLY B 151 ASN B 152 GLY B 153 VAL B 155 SITE 5 AC3 26 GLY B 159 TYR B 161 HOH B 313 HOH B 316 SITE 6 AC3 26 HOH B 317 HOH B 319 HOH B 330 HOH B 332 SITE 7 AC3 26 HOH B 346 HOH B 354 CRYST1 48.570 60.651 83.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020589 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016488 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011998 0.00000