HEADER OXIDOREDUCTASE 31-JUL-19 6KM9 TITLE CRYSTAL STRUCTURE OF SUCA FROM VIBRIO VULNIFICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXOGLUTARATE DEHYDROGENASE (SUCCINYL-TRANSFERRING), E1 COMPND 3 COMPONENT; COMPND 4 CHAIN: A, B; COMPND 5 EC: 1.2.4.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS (STRAIN CMCP6); SOURCE 3 ORGANISM_TAXID: 216895; SOURCE 4 STRAIN: CMCP6; SOURCE 5 GENE: SUCA, VV1_0157; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.W.SEO,J.S.KIM REVDAT 3 22-NOV-23 6KM9 1 REMARK REVDAT 2 24-FEB-21 6KM9 1 JRNL REVDAT 1 05-AUG-20 6KM9 0 JRNL AUTH P.W.SEO,H.J.JO,I.Y.HWANG,H.Y.JEONG,J.H.KIM,J.W.KIM,E.Y.LEE, JRNL AUTH 2 J.B.PARK,J.S.KIM JRNL TITL UNDERSTANDING THE MOLECULAR PROPERTIES OF THE E1 SUBUNIT JRNL TITL 2 (SUCA) OF ALPHA-KETOGLUTARATE DEHYDROGENASE COMPLEX FROM JRNL TITL 3 VIBRIO VULNIFICUS FOR THE ENANTIOSELECTIVE LIGATION OF JRNL TITL 4 ACETALDEHYDES INTO (R)-ACETOIN. JRNL REF CATALYSIS SCIENCE AND 2020 JRNL REF 2 TECHNOLOGY JRNL REFN ESSN 2044-4761 JRNL DOI 10.1039/C9CY01566C REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 47911 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3770 - 6.5603 0.98 3404 140 0.1901 0.2560 REMARK 3 2 6.5603 - 5.2092 0.98 3309 138 0.1940 0.2451 REMARK 3 3 5.2092 - 4.5513 0.99 3334 140 0.1576 0.2280 REMARK 3 4 4.5513 - 4.1355 1.00 3359 139 0.1494 0.2045 REMARK 3 5 4.1355 - 3.8392 0.97 3232 135 0.1599 0.2075 REMARK 3 6 3.8392 - 3.6129 0.99 3337 140 0.1749 0.2153 REMARK 3 7 3.6129 - 3.4320 0.99 3304 137 0.1880 0.2475 REMARK 3 8 3.4320 - 3.2827 0.99 3309 137 0.2007 0.2555 REMARK 3 9 3.2827 - 3.1563 0.99 3315 139 0.2121 0.2775 REMARK 3 10 3.1563 - 3.0474 0.97 3226 135 0.2377 0.3136 REMARK 3 11 3.0474 - 2.9522 0.98 3256 135 0.2384 0.2972 REMARK 3 12 2.9522 - 2.8678 0.99 3295 138 0.2408 0.2977 REMARK 3 13 2.8678 - 2.7923 0.99 3302 138 0.2509 0.3139 REMARK 3 14 2.7923 - 2.7242 0.92 3013 125 0.2806 0.3146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 13751 REMARK 3 ANGLE : 0.859 18634 REMARK 3 CHIRALITY : 0.052 1984 REMARK 3 PLANARITY : 0.006 2459 REMARK 3 DIHEDRAL : 17.658 8234 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -21.2153 5.3585 -35.8907 REMARK 3 T TENSOR REMARK 3 T11: 0.2362 T22: 0.2634 REMARK 3 T33: 0.3826 T12: -0.0045 REMARK 3 T13: -0.0400 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.4833 L22: 0.5202 REMARK 3 L33: 0.4352 L12: 0.0837 REMARK 3 L13: -0.0431 L23: 0.0253 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: -0.0983 S13: 0.0432 REMARK 3 S21: 0.0753 S22: -0.0600 S23: -0.0077 REMARK 3 S31: 0.0064 S32: 0.0054 S33: 0.0051 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : (CHAIN B AND RESID 87 THROUGH 934) REMARK 3 ATOM PAIRS NUMBER : 8182 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47954 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2JGD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 220 MM CALCIUM ACETATE, 100 MM 2 REMARK 280 -(BIS(2-HYDROXYETHYL)AMINO)ACETIC ACID (BICINE) (PH 9.0), 50% (V/ REMARK 280 V) PEG 300, 0.1 MM THDP, AND 0.1 MM MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.35400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 56 REMARK 465 GLY A 57 REMARK 465 SER A 58 REMARK 465 SER A 59 REMARK 465 HIS A 60 REMARK 465 HIS A 61 REMARK 465 HIS A 62 REMARK 465 HIS A 63 REMARK 465 HIS A 64 REMARK 465 HIS A 65 REMARK 465 ASP A 66 REMARK 465 TYR A 67 REMARK 465 ASP A 68 REMARK 465 ILE A 69 REMARK 465 PRO A 70 REMARK 465 THR A 71 REMARK 465 THR A 72 REMARK 465 GLU A 73 REMARK 465 ASN A 74 REMARK 465 LEU A 75 REMARK 465 TYR A 76 REMARK 465 PHE A 77 REMARK 465 GLN A 78 REMARK 465 GLY A 79 REMARK 465 GLY A 80 REMARK 465 GLY A 81 REMARK 465 GLY A 82 REMARK 465 GLY A 83 REMARK 465 GLY A 84 REMARK 465 ASP A 85 REMARK 465 VAL A 86 REMARK 465 HIS A 532 REMARK 465 SER A 533 REMARK 465 VAL A 534 REMARK 465 ASP A 535 REMARK 465 VAL A 935 REMARK 465 ASN A 936 REMARK 465 GLU A 937 REMARK 465 LYS A 938 REMARK 465 THR A 939 REMARK 465 SER A 940 REMARK 465 ASP A 941 REMARK 465 MET B 56 REMARK 465 GLY B 57 REMARK 465 SER B 58 REMARK 465 SER B 59 REMARK 465 HIS B 60 REMARK 465 HIS B 61 REMARK 465 HIS B 62 REMARK 465 HIS B 63 REMARK 465 HIS B 64 REMARK 465 HIS B 65 REMARK 465 ASP B 66 REMARK 465 TYR B 67 REMARK 465 ASP B 68 REMARK 465 ILE B 69 REMARK 465 PRO B 70 REMARK 465 THR B 71 REMARK 465 THR B 72 REMARK 465 GLU B 73 REMARK 465 ASN B 74 REMARK 465 LEU B 75 REMARK 465 TYR B 76 REMARK 465 PHE B 77 REMARK 465 GLN B 78 REMARK 465 GLY B 79 REMARK 465 GLY B 80 REMARK 465 GLY B 81 REMARK 465 GLY B 82 REMARK 465 GLY B 83 REMARK 465 GLY B 84 REMARK 465 ASP B 85 REMARK 465 VAL B 86 REMARK 465 HIS B 532 REMARK 465 SER B 533 REMARK 465 VAL B 534 REMARK 465 ASP B 535 REMARK 465 ASN B 936 REMARK 465 GLU B 937 REMARK 465 LYS B 938 REMARK 465 THR B 939 REMARK 465 SER B 940 REMARK 465 ASP B 941 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 449 NH1 NH2 REMARK 470 THR A 756 CG2 REMARK 470 ARG B 449 NH1 NH2 REMARK 470 THR B 756 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 399 O HOH A 1101 1.85 REMARK 500 OD1 ASP A 346 O HOH A 1102 1.90 REMARK 500 O ALA B 530 O HOH B 1101 1.93 REMARK 500 O LEU B 189 O HOH B 1102 1.94 REMARK 500 N ARG B 556 O HOH B 1103 1.96 REMARK 500 OG1 THR A 551 O HOH A 1103 1.97 REMARK 500 OE1 GLU B 656 O HOH B 1104 1.97 REMARK 500 O THR B 405 O HOH B 1105 1.98 REMARK 500 OE2 GLU B 543 O HOH B 1106 2.01 REMARK 500 NE ARG B 118 O HOH B 1107 2.03 REMARK 500 O ASP B 347 O HOH B 1108 2.06 REMARK 500 O HOH A 1144 O HOH A 1154 2.08 REMARK 500 ND1 HIS B 463 O HOH B 1109 2.08 REMARK 500 NH1 ARG A 103 OE1 GLU A 123 2.11 REMARK 500 NH1 ARG A 770 O HOH A 1104 2.11 REMARK 500 OE1 GLU A 233 O HOH A 1105 2.12 REMARK 500 OE1 GLU B 511 O HOH B 1110 2.13 REMARK 500 OG1 THR B 132 OD1 ASP B 134 2.13 REMARK 500 OD2 ASP B 830 O HOH B 1111 2.16 REMARK 500 N GLN B 555 O HOH B 1103 2.16 REMARK 500 NE2 HIS A 289 O HOH A 1106 2.18 REMARK 500 OD1 ASP A 348 O HOH A 1102 2.18 REMARK 500 OD2 ASP B 659 O HOH B 1112 2.19 REMARK 500 O LEU A 326 O HOH A 1107 2.19 REMARK 500 OH TYR B 219 OD1 ASP B 517 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 878 CD GLU A 878 OE1 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 126 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 173 -13.25 -140.49 REMARK 500 ALA A 262 -156.34 -115.45 REMARK 500 VAL A 273 -44.13 -135.58 REMARK 500 GLU A 291 60.79 70.28 REMARK 500 PHE A 397 -115.28 54.17 REMARK 500 CYS A 457 -155.29 -150.85 REMARK 500 HIS A 461 -161.82 -105.31 REMARK 500 PHE A 703 -67.73 -120.43 REMARK 500 SER A 733 -37.25 -137.71 REMARK 500 PRO A 771 48.62 -78.47 REMARK 500 ALA B 146 51.79 -93.92 REMARK 500 ALA B 262 -156.00 -115.44 REMARK 500 VAL B 273 -48.32 -132.56 REMARK 500 PHE B 397 -114.48 54.96 REMARK 500 CYS B 457 -152.09 -149.43 REMARK 500 HIS B 461 -161.71 -106.39 REMARK 500 SER B 733 -40.45 -139.15 REMARK 500 PRO B 771 49.89 -77.74 REMARK 500 PRO B 807 -176.35 -69.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 325 LEU A 326 -148.59 REMARK 500 HIS B 325 LEU B 326 -148.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 360 OD1 REMARK 620 2 ASN A 393 OD1 81.7 REMARK 620 3 VAL A 395 O 98.3 89.5 REMARK 620 4 TPP A1003 O1A 83.3 164.7 89.8 REMARK 620 5 TPP A1003 O1B 165.7 109.1 91.2 86.2 REMARK 620 6 HOH A1121 O 77.9 80.0 169.2 99.8 94.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 665 OE1 REMARK 620 2 GLU B 665 OE1 158.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 360 OD1 REMARK 620 2 ASN B 393 OD1 74.9 REMARK 620 3 VAL B 395 O 90.2 87.9 REMARK 620 4 TPP B1003 O1A 79.2 153.6 97.0 REMARK 620 5 TPP B1003 O3B 168.2 113.8 98.1 91.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TPP A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TPP B 1003 DBREF1 6KM9 A 85 941 UNP A0A3Q0L1E1_VIBVU DBREF2 6KM9 A A0A3Q0L1E1 85 941 DBREF1 6KM9 B 85 941 UNP A0A3Q0L1E1_VIBVU DBREF2 6KM9 B A0A3Q0L1E1 85 941 SEQADV 6KM9 MET A 56 UNP A0A3Q0L1E INITIATING METHIONINE SEQADV 6KM9 GLY A 57 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 SER A 58 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 SER A 59 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS A 60 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS A 61 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS A 62 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS A 63 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS A 64 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS A 65 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 ASP A 66 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 TYR A 67 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 ASP A 68 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 ILE A 69 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 PRO A 70 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 THR A 71 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 THR A 72 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLU A 73 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 ASN A 74 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 LEU A 75 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 TYR A 76 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 PHE A 77 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLN A 78 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY A 79 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY A 80 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY A 81 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY A 82 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY A 83 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY A 84 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 MET B 56 UNP A0A3Q0L1E INITIATING METHIONINE SEQADV 6KM9 GLY B 57 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 SER B 58 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 SER B 59 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS B 60 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS B 61 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS B 62 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS B 63 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS B 64 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 HIS B 65 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 ASP B 66 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 TYR B 67 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 ASP B 68 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 ILE B 69 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 PRO B 70 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 THR B 71 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 THR B 72 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLU B 73 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 ASN B 74 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 LEU B 75 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 TYR B 76 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 PHE B 77 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLN B 78 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY B 79 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY B 80 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY B 81 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY B 82 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY B 83 UNP A0A3Q0L1E EXPRESSION TAG SEQADV 6KM9 GLY B 84 UNP A0A3Q0L1E EXPRESSION TAG SEQRES 1 A 886 MET GLY SER SER HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 886 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY GLY GLY SEQRES 3 A 886 GLY GLY GLY ASP VAL ASP ALA LYS GLN VAL LYS VAL LEU SEQRES 4 A 886 GLN LEU ILE ASN ALA TYR ARG PHE ARG GLY HIS GLU ALA SEQRES 5 A 886 ALA GLU LEU ASP PRO LEU GLY LEU TRP GLN ARG PRO THR SEQRES 6 A 886 VAL ALA GLU LEU ASP PRO ALA PHE HIS ASN LEU THR GLU SEQRES 7 A 886 ASP ASP PHE GLU GLU THR PHE ASN VAL GLY SER PHE ALA SEQRES 8 A 886 VAL GLY GLN GLU THR MET PRO LEU LYS ASP ILE TYR THR SEQRES 9 A 886 ALA LEU LYS LYS THR TYR CYS GLY SER ILE GLY ALA GLU SEQRES 10 A 886 TYR MET HIS MET THR ASP THR GLU GLN LYS ARG TRP ILE SEQRES 11 A 886 GLN GLN ARG LEU GLU SER VAL VAL GLY GLN PRO SER PHE SEQRES 12 A 886 ASP LYS ASP GLU LYS ARG THR PHE LEU ALA GLU LEU THR SEQRES 13 A 886 ALA ALA GLU GLY LEU GLU ARG TYR LEU GLY ALA LYS PHE SEQRES 14 A 886 PRO GLY ALA LYS ARG PHE SER LEU GLU GLY GLY ASP ALA SEQRES 15 A 886 MET ILE PRO MET MET LYS GLU LEU ILE ARG HIS ALA GLY SEQRES 16 A 886 ARG SER GLY MET ARG GLU VAL VAL ILE GLY MET ALA HIS SEQRES 17 A 886 ARG GLY ARG LEU ASN MET LEU VAL ASN VAL LEU GLY LYS SEQRES 18 A 886 LYS PRO GLN ASP LEU PHE ASP GLU PHE ALA GLY LYS HIS SEQRES 19 A 886 GLY GLU SER TRP GLY THR GLY ASP VAL LYS TYR HIS GLN SEQRES 20 A 886 GLY PHE SER ALA ASP PHE ALA THR PRO GLY GLY ASP VAL SEQRES 21 A 886 HIS LEU ALA LEU ALA PHE ASN PRO SER HIS LEU GLU ILE SEQRES 22 A 886 VAL ASN PRO VAL VAL MET GLY SER VAL ARG ALA ARG GLN SEQRES 23 A 886 ASP ARG LEU GLY ASP ASP ASP GLY SER LYS VAL LEU PRO SEQRES 24 A 886 ILE THR ILE HIS GLY ASP SER ALA ILE ALA GLY GLN GLY SEQRES 25 A 886 VAL VAL ALA GLU THR PHE ASN MET SER GLN ALA ARG GLY SEQRES 26 A 886 PHE CYS VAL GLY GLY THR VAL ARG VAL VAL VAL ASN ASN SEQRES 27 A 886 GLN VAL GLY PHE THR THR SER ASN PRO ARG ASP THR ARG SEQRES 28 A 886 SER THR MET TYR CYS THR ASP ILE ALA LYS MET VAL GLN SEQRES 29 A 886 ALA PRO ILE PHE HIS VAL ASN ALA ASP ASP PRO GLU ALA SEQRES 30 A 886 VAL ALA PHE VAL THR ARG ILE ALA LEU ASP TYR ARG ASN SEQRES 31 A 886 GLU PHE LYS ARG ASP VAL VAL ILE ASP LEU VAL CYS TYR SEQRES 32 A 886 ARG ARG HIS GLY HIS ASN GLU ALA ASP GLU PRO ASN ALA SEQRES 33 A 886 THR GLN PRO LEU MET TYR GLN LYS ILE LYS LYS HIS PRO SEQRES 34 A 886 THR PRO ARG LYS LEU TYR ALA ASP VAL LEU ILE ASP ARG SEQRES 35 A 886 ASN GLU CYS ASP ILE GLU THR ALA THR GLN MET VAL ASN SEQRES 36 A 886 GLU TYR ARG ASP ALA LEU ASP HIS GLY GLU VAL VAL VAL SEQRES 37 A 886 LYS GLU TRP ARG PRO MET ALA LEU HIS SER VAL ASP TRP SEQRES 38 A 886 SER PRO TYR LEU GLY HIS GLU TRP ASP THR PRO TRP SER SEQRES 39 A 886 ASN THR TYR ASP LYS GLN ARG LEU VAL GLU LEU GLY LYS SEQRES 40 A 886 ARG LEU CYS GLN TYR PRO GLU SER HIS THR LEU HIS SER SEQRES 41 A 886 ARG VAL SER LYS LEU TYR ASN ASP ARG THR ALA MET THR SEQRES 42 A 886 ASN GLY GLU LYS GLU LEU ASP TRP GLY MET ALA GLU THR SEQRES 43 A 886 LEU ALA TYR ALA THR LEU VAL ASP ASP GLY LYS ARG ILE SEQRES 44 A 886 ARG ILE SER GLY GLN ASP SER GLY ARG GLY THR PHE PHE SEQRES 45 A 886 HIS ARG HIS ALA VAL LEU HIS ASN GLN ASN ASP ALA SER SEQRES 46 A 886 THR TYR VAL PRO LEU ALA ASN ILE HIS ASP LYS GLN GLY SEQRES 47 A 886 PRO PHE GLU VAL PHE ASP SER VAL LEU SER GLU GLU ALA SEQRES 48 A 886 VAL LEU ALA PHE GLU TYR GLY TYR ALA THR ALA GLU PRO SEQRES 49 A 886 SER GLY LEU THR LEU TRP GLU ALA GLN PHE GLY ASP PHE SEQRES 50 A 886 ALA ASN GLY ALA GLN VAL VAL ILE ASP GLN PHE ILE SER SEQRES 51 A 886 SER GLY GLU GLN LYS TRP ALA ARG LEU CYS GLY LEU THR SEQRES 52 A 886 MET LEU LEU PRO HIS GLY TYR GLU GLY GLN GLY PRO GLU SEQRES 53 A 886 HIS SER SER ALA ARG LEU GLU ARG TYR LEU GLN LEU CYS SEQRES 54 A 886 ALA GLU GLN ASN MET GLN VAL VAL VAL PRO SER THR PRO SEQRES 55 A 886 ALA GLN VAL TYR HIS MET ILE ARG ARG GLN VAL VAL ARG SEQRES 56 A 886 PRO MET ARG ARG PRO LEU ILE VAL MET SER PRO LYS SER SEQRES 57 A 886 LEU LEU ARG HIS PRO LEU CYS THR SER SER LEU ASP ASP SEQRES 58 A 886 LEU ALA ASN GLY THR PHE MET PRO ALA ILE PRO GLU ILE SEQRES 59 A 886 ASP GLU LEU ASP PRO ALA LYS VAL LYS ARG VAL VAL PHE SEQRES 60 A 886 CYS SER GLY LYS VAL TYR PHE ASP LEU LEU GLU GLN ARG SEQRES 61 A 886 ARG ASN ASN GLU GLN ASP ASP VAL ALA ILE VAL ARG ILE SEQRES 62 A 886 GLU GLN LEU TYR PRO PHE PRO MET ASP ASP VAL LYS ALA SEQRES 63 A 886 ALA ILE ALA PRO TYR VAL ASN VAL GLU ASP PHE VAL TRP SEQRES 64 A 886 CYS GLN GLU GLU PRO GLN ASN GLN GLY ALA TRP TYR CYS SEQRES 65 A 886 SER GLN HIS ASN PHE ARG ALA ALA ILE PRO ALA GLY THR SEQRES 66 A 886 GLU LEU LYS TYR ALA GLY ARG PRO ALA SER ALA SER PRO SEQRES 67 A 886 ALA VAL GLY TYR MET SER VAL HIS LEU LYS GLN GLN LYS SEQRES 68 A 886 ALA LEU ILE ASP ASP ALA LEU ASN VAL ASN GLU LYS THR SEQRES 69 A 886 SER ASP SEQRES 1 B 886 MET GLY SER SER HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 B 886 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY GLY GLY SEQRES 3 B 886 GLY GLY GLY ASP VAL ASP ALA LYS GLN VAL LYS VAL LEU SEQRES 4 B 886 GLN LEU ILE ASN ALA TYR ARG PHE ARG GLY HIS GLU ALA SEQRES 5 B 886 ALA GLU LEU ASP PRO LEU GLY LEU TRP GLN ARG PRO THR SEQRES 6 B 886 VAL ALA GLU LEU ASP PRO ALA PHE HIS ASN LEU THR GLU SEQRES 7 B 886 ASP ASP PHE GLU GLU THR PHE ASN VAL GLY SER PHE ALA SEQRES 8 B 886 VAL GLY GLN GLU THR MET PRO LEU LYS ASP ILE TYR THR SEQRES 9 B 886 ALA LEU LYS LYS THR TYR CYS GLY SER ILE GLY ALA GLU SEQRES 10 B 886 TYR MET HIS MET THR ASP THR GLU GLN LYS ARG TRP ILE SEQRES 11 B 886 GLN GLN ARG LEU GLU SER VAL VAL GLY GLN PRO SER PHE SEQRES 12 B 886 ASP LYS ASP GLU LYS ARG THR PHE LEU ALA GLU LEU THR SEQRES 13 B 886 ALA ALA GLU GLY LEU GLU ARG TYR LEU GLY ALA LYS PHE SEQRES 14 B 886 PRO GLY ALA LYS ARG PHE SER LEU GLU GLY GLY ASP ALA SEQRES 15 B 886 MET ILE PRO MET MET LYS GLU LEU ILE ARG HIS ALA GLY SEQRES 16 B 886 ARG SER GLY MET ARG GLU VAL VAL ILE GLY MET ALA HIS SEQRES 17 B 886 ARG GLY ARG LEU ASN MET LEU VAL ASN VAL LEU GLY LYS SEQRES 18 B 886 LYS PRO GLN ASP LEU PHE ASP GLU PHE ALA GLY LYS HIS SEQRES 19 B 886 GLY GLU SER TRP GLY THR GLY ASP VAL LYS TYR HIS GLN SEQRES 20 B 886 GLY PHE SER ALA ASP PHE ALA THR PRO GLY GLY ASP VAL SEQRES 21 B 886 HIS LEU ALA LEU ALA PHE ASN PRO SER HIS LEU GLU ILE SEQRES 22 B 886 VAL ASN PRO VAL VAL MET GLY SER VAL ARG ALA ARG GLN SEQRES 23 B 886 ASP ARG LEU GLY ASP ASP ASP GLY SER LYS VAL LEU PRO SEQRES 24 B 886 ILE THR ILE HIS GLY ASP SER ALA ILE ALA GLY GLN GLY SEQRES 25 B 886 VAL VAL ALA GLU THR PHE ASN MET SER GLN ALA ARG GLY SEQRES 26 B 886 PHE CYS VAL GLY GLY THR VAL ARG VAL VAL VAL ASN ASN SEQRES 27 B 886 GLN VAL GLY PHE THR THR SER ASN PRO ARG ASP THR ARG SEQRES 28 B 886 SER THR MET TYR CYS THR ASP ILE ALA LYS MET VAL GLN SEQRES 29 B 886 ALA PRO ILE PHE HIS VAL ASN ALA ASP ASP PRO GLU ALA SEQRES 30 B 886 VAL ALA PHE VAL THR ARG ILE ALA LEU ASP TYR ARG ASN SEQRES 31 B 886 GLU PHE LYS ARG ASP VAL VAL ILE ASP LEU VAL CYS TYR SEQRES 32 B 886 ARG ARG HIS GLY HIS ASN GLU ALA ASP GLU PRO ASN ALA SEQRES 33 B 886 THR GLN PRO LEU MET TYR GLN LYS ILE LYS LYS HIS PRO SEQRES 34 B 886 THR PRO ARG LYS LEU TYR ALA ASP VAL LEU ILE ASP ARG SEQRES 35 B 886 ASN GLU CYS ASP ILE GLU THR ALA THR GLN MET VAL ASN SEQRES 36 B 886 GLU TYR ARG ASP ALA LEU ASP HIS GLY GLU VAL VAL VAL SEQRES 37 B 886 LYS GLU TRP ARG PRO MET ALA LEU HIS SER VAL ASP TRP SEQRES 38 B 886 SER PRO TYR LEU GLY HIS GLU TRP ASP THR PRO TRP SER SEQRES 39 B 886 ASN THR TYR ASP LYS GLN ARG LEU VAL GLU LEU GLY LYS SEQRES 40 B 886 ARG LEU CYS GLN TYR PRO GLU SER HIS THR LEU HIS SER SEQRES 41 B 886 ARG VAL SER LYS LEU TYR ASN ASP ARG THR ALA MET THR SEQRES 42 B 886 ASN GLY GLU LYS GLU LEU ASP TRP GLY MET ALA GLU THR SEQRES 43 B 886 LEU ALA TYR ALA THR LEU VAL ASP ASP GLY LYS ARG ILE SEQRES 44 B 886 ARG ILE SER GLY GLN ASP SER GLY ARG GLY THR PHE PHE SEQRES 45 B 886 HIS ARG HIS ALA VAL LEU HIS ASN GLN ASN ASP ALA SER SEQRES 46 B 886 THR TYR VAL PRO LEU ALA ASN ILE HIS ASP LYS GLN GLY SEQRES 47 B 886 PRO PHE GLU VAL PHE ASP SER VAL LEU SER GLU GLU ALA SEQRES 48 B 886 VAL LEU ALA PHE GLU TYR GLY TYR ALA THR ALA GLU PRO SEQRES 49 B 886 SER GLY LEU THR LEU TRP GLU ALA GLN PHE GLY ASP PHE SEQRES 50 B 886 ALA ASN GLY ALA GLN VAL VAL ILE ASP GLN PHE ILE SER SEQRES 51 B 886 SER GLY GLU GLN LYS TRP ALA ARG LEU CYS GLY LEU THR SEQRES 52 B 886 MET LEU LEU PRO HIS GLY TYR GLU GLY GLN GLY PRO GLU SEQRES 53 B 886 HIS SER SER ALA ARG LEU GLU ARG TYR LEU GLN LEU CYS SEQRES 54 B 886 ALA GLU GLN ASN MET GLN VAL VAL VAL PRO SER THR PRO SEQRES 55 B 886 ALA GLN VAL TYR HIS MET ILE ARG ARG GLN VAL VAL ARG SEQRES 56 B 886 PRO MET ARG ARG PRO LEU ILE VAL MET SER PRO LYS SER SEQRES 57 B 886 LEU LEU ARG HIS PRO LEU CYS THR SER SER LEU ASP ASP SEQRES 58 B 886 LEU ALA ASN GLY THR PHE MET PRO ALA ILE PRO GLU ILE SEQRES 59 B 886 ASP GLU LEU ASP PRO ALA LYS VAL LYS ARG VAL VAL PHE SEQRES 60 B 886 CYS SER GLY LYS VAL TYR PHE ASP LEU LEU GLU GLN ARG SEQRES 61 B 886 ARG ASN ASN GLU GLN ASP ASP VAL ALA ILE VAL ARG ILE SEQRES 62 B 886 GLU GLN LEU TYR PRO PHE PRO MET ASP ASP VAL LYS ALA SEQRES 63 B 886 ALA ILE ALA PRO TYR VAL ASN VAL GLU ASP PHE VAL TRP SEQRES 64 B 886 CYS GLN GLU GLU PRO GLN ASN GLN GLY ALA TRP TYR CYS SEQRES 65 B 886 SER GLN HIS ASN PHE ARG ALA ALA ILE PRO ALA GLY THR SEQRES 66 B 886 GLU LEU LYS TYR ALA GLY ARG PRO ALA SER ALA SER PRO SEQRES 67 B 886 ALA VAL GLY TYR MET SER VAL HIS LEU LYS GLN GLN LYS SEQRES 68 B 886 ALA LEU ILE ASP ASP ALA LEU ASN VAL ASN GLU LYS THR SEQRES 69 B 886 SER ASP HET P6G A1001 19 HET MG A1002 1 HET TPP A1003 26 HET CA A1004 1 HET P6G B1001 19 HET MG B1002 1 HET TPP B1003 26 HETNAM P6G HEXAETHYLENE GLYCOL HETNAM MG MAGNESIUM ION HETNAM TPP THIAMINE DIPHOSPHATE HETNAM CA CALCIUM ION HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 P6G 2(C12 H26 O7) FORMUL 4 MG 2(MG 2+) FORMUL 5 TPP 2(C12 H19 N4 O7 P2 S 1+) FORMUL 6 CA CA 2+ FORMUL 10 HOH *139(H2 O) HELIX 1 AA1 ASP A 87 ALA A 108 1 22 HELIX 2 AA2 VAL A 121 ASN A 130 5 10 HELIX 3 AA3 THR A 132 GLU A 137 1 6 HELIX 4 AA4 LEU A 154 CYS A 166 1 13 HELIX 5 AA5 ASP A 178 VAL A 193 1 16 HELIX 6 AA6 ASP A 199 PHE A 224 1 26 HELIX 7 AA7 ALA A 237 SER A 252 1 16 HELIX 8 AA8 GLY A 265 VAL A 273 1 9 HELIX 9 AA9 LYS A 277 ALA A 286 1 10 HELIX 10 AB1 VAL A 298 GLN A 302 5 5 HELIX 11 AB2 ILE A 328 GLY A 345 1 18 HELIX 12 AB3 ASP A 360 GLN A 366 1 7 HELIX 13 AB4 GLY A 367 SER A 376 1 10 HELIX 14 AB5 ASN A 401 ARG A 406 1 6 HELIX 15 AB6 TYR A 410 GLN A 419 5 10 HELIX 16 AB7 ASP A 429 LYS A 448 1 20 HELIX 17 AB8 GLU A 468 THR A 472 5 5 HELIX 18 AB9 GLN A 473 LYS A 482 1 10 HELIX 19 AC1 THR A 485 ARG A 497 1 13 HELIX 20 AC2 ASP A 501 GLY A 519 1 19 HELIX 21 AC3 ASP A 553 GLN A 566 1 14 HELIX 22 AC4 HIS A 574 ASN A 589 1 16 HELIX 23 AC5 ASP A 595 ASP A 610 1 16 HELIX 24 AC6 VAL A 643 ILE A 648 5 6 HELIX 25 AC7 GLU A 664 GLU A 678 1 15 HELIX 26 AC8 PHE A 689 GLY A 695 5 7 HELIX 27 AC9 ALA A 696 PHE A 703 1 8 HELIX 28 AD1 SER A 706 ALA A 712 1 7 HELIX 29 AD2 ARG A 736 LEU A 743 1 8 HELIX 30 AD3 THR A 756 ARG A 770 1 15 HELIX 31 AD4 LYS A 782 ARG A 786 5 5 HELIX 32 AD5 SER A 793 GLY A 800 1 8 HELIX 33 AD6 ASP A 813 VAL A 817 5 5 HELIX 34 AD7 LYS A 826 ASN A 838 1 13 HELIX 35 AD8 PRO A 855 ALA A 864 1 10 HELIX 36 AD9 ALA A 884 ILE A 896 1 13 HELIX 37 AE1 TYR A 917 ASN A 934 1 18 HELIX 38 AE2 ALA B 88 GLY B 104 1 17 HELIX 39 AE3 HIS B 105 ALA B 107 5 3 HELIX 40 AE4 VAL B 121 ASN B 130 5 10 HELIX 41 AE5 THR B 132 GLU B 137 1 6 HELIX 42 AE6 LEU B 154 CYS B 166 1 13 HELIX 43 AE7 ASP B 178 VAL B 192 1 15 HELIX 44 AE8 ASP B 199 PHE B 224 1 26 HELIX 45 AE9 ALA B 237 SER B 252 1 16 HELIX 46 AF1 GLY B 265 VAL B 273 1 9 HELIX 47 AF2 LYS B 277 ALA B 286 1 10 HELIX 48 AF3 VAL B 298 GLN B 302 5 5 HELIX 49 AF4 ILE B 328 GLY B 345 1 18 HELIX 50 AF5 ASP B 360 GLN B 366 1 7 HELIX 51 AF6 GLN B 366 SER B 376 1 11 HELIX 52 AF7 ASN B 401 ARG B 406 1 6 HELIX 53 AF8 THR B 412 GLN B 419 5 8 HELIX 54 AF9 ASP B 429 LYS B 448 1 20 HELIX 55 AG1 GLU B 468 THR B 472 5 5 HELIX 56 AG2 GLN B 473 LYS B 481 1 9 HELIX 57 AG3 THR B 485 ARG B 497 1 13 HELIX 58 AG4 ASP B 501 GLY B 519 1 19 HELIX 59 AG5 ASP B 553 GLN B 566 1 14 HELIX 60 AG6 HIS B 574 ASN B 589 1 16 HELIX 61 AG7 ASP B 595 ASP B 610 1 16 HELIX 62 AG8 VAL B 643 ILE B 648 5 6 HELIX 63 AG9 GLU B 664 GLU B 678 1 15 HELIX 64 AH1 PHE B 689 GLY B 695 5 7 HELIX 65 AH2 ALA B 696 PHE B 703 1 8 HELIX 66 AH3 SER B 706 ALA B 712 1 7 HELIX 67 AH4 ARG B 736 CYS B 744 1 9 HELIX 68 AH5 THR B 756 ARG B 770 1 15 HELIX 69 AH6 LYS B 782 ARG B 786 5 5 HELIX 70 AH7 SER B 793 GLY B 800 1 8 HELIX 71 AH8 ASP B 813 VAL B 817 5 5 HELIX 72 AH9 LYS B 826 ASN B 838 1 13 HELIX 73 AI1 PRO B 855 ALA B 864 1 10 HELIX 74 AI2 ALA B 884 ILE B 896 1 13 HELIX 75 AI3 TYR B 917 ASN B 934 1 18 SHEET 1 AA1 2 THR A 139 ASN A 141 0 SHEET 2 AA1 2 THR A 151 PRO A 153 -1 O MET A 152 N PHE A 140 SHEET 1 AA2 9 ILE A 169 GLU A 172 0 SHEET 2 AA2 9 ILE A 422 ASN A 426 -1 O HIS A 424 N GLY A 170 SHEET 3 AA2 9 VAL A 451 VAL A 456 1 O ASP A 454 N VAL A 425 SHEET 4 AA2 9 VAL A 387 ASN A 392 1 N ARG A 388 O ILE A 453 SHEET 5 AA2 9 VAL A 352 GLY A 359 1 N HIS A 358 O VAL A 391 SHEET 6 AA2 9 GLU A 256 GLY A 260 1 N GLU A 256 O LEU A 353 SHEET 7 AA2 9 GLY A 313 LEU A 319 1 O ALA A 318 N ILE A 259 SHEET 8 AA2 9 PHE A 304 THR A 310 -1 N PHE A 304 O LEU A 319 SHEET 9 AA2 9 TRP A 526 ARG A 527 -1 O ARG A 527 N ASP A 307 SHEET 1 AA3 7 PHE A 655 ASP A 659 0 SHEET 2 AA3 7 ILE A 614 GLY A 618 1 N ILE A 616 O PHE A 658 SHEET 3 AA3 7 LEU A 682 GLU A 686 1 O GLU A 686 N SER A 617 SHEET 4 AA3 7 THR A 718 PRO A 722 1 O LEU A 720 N TRP A 685 SHEET 5 AA3 7 LEU A 776 SER A 780 1 O VAL A 778 N MET A 719 SHEET 6 AA3 7 GLN A 750 VAL A 752 1 N GLN A 750 O ILE A 777 SHEET 7 AA3 7 GLN A 850 TYR A 852 -1 O TYR A 852 N VAL A 751 SHEET 1 AA4 2 LEU A 633 HIS A 634 0 SHEET 2 AA4 2 THR A 641 TYR A 642 -1 O TYR A 642 N LEU A 633 SHEET 1 AA5 4 VAL A 843 ARG A 847 0 SHEET 2 AA5 4 ARG A 819 CYS A 823 1 N VAL A 821 O VAL A 846 SHEET 3 AA5 4 ASP A 871 PRO A 879 1 O VAL A 873 N PHE A 822 SHEET 4 AA5 4 GLU A 901 ARG A 907 1 O LYS A 903 N TRP A 874 SHEET 1 AA6 2 THR B 139 ASN B 141 0 SHEET 2 AA6 2 THR B 151 PRO B 153 -1 O MET B 152 N PHE B 140 SHEET 1 AA7 9 ILE B 169 GLU B 172 0 SHEET 2 AA7 9 ILE B 422 ASN B 426 -1 O HIS B 424 N GLY B 170 SHEET 3 AA7 9 VAL B 451 VAL B 456 1 O ASP B 454 N VAL B 425 SHEET 4 AA7 9 VAL B 387 ASN B 392 1 N ARG B 388 O ILE B 453 SHEET 5 AA7 9 VAL B 352 GLY B 359 1 N HIS B 358 O VAL B 391 SHEET 6 AA7 9 GLU B 256 GLY B 260 1 N GLU B 256 O LEU B 353 SHEET 7 AA7 9 GLY B 313 LEU B 319 1 O ALA B 318 N ILE B 259 SHEET 8 AA7 9 PHE B 304 THR B 310 -1 N PHE B 304 O LEU B 319 SHEET 9 AA7 9 TRP B 526 ARG B 527 -1 O ARG B 527 N ASP B 307 SHEET 1 AA8 7 PHE B 655 ASP B 659 0 SHEET 2 AA8 7 ILE B 614 GLY B 618 1 N ILE B 616 O GLU B 656 SHEET 3 AA8 7 LEU B 682 GLU B 686 1 O LEU B 684 N ARG B 615 SHEET 4 AA8 7 THR B 718 PRO B 722 1 O THR B 718 N TRP B 685 SHEET 5 AA8 7 LEU B 776 SER B 780 1 O LEU B 776 N MET B 719 SHEET 6 AA8 7 GLN B 750 VAL B 752 1 N GLN B 750 O ILE B 777 SHEET 7 AA8 7 GLN B 850 TYR B 852 -1 O TYR B 852 N VAL B 751 SHEET 1 AA9 2 LEU B 633 HIS B 634 0 SHEET 2 AA9 2 THR B 641 TYR B 642 -1 O TYR B 642 N LEU B 633 SHEET 1 AB1 5 ALA B 805 ILE B 806 0 SHEET 2 AB1 5 VAL B 843 ILE B 848 -1 O ARG B 847 N ILE B 806 SHEET 3 AB1 5 ARG B 819 CYS B 823 1 N VAL B 821 O ALA B 844 SHEET 4 AB1 5 ASP B 871 PRO B 879 1 O VAL B 873 N PHE B 822 SHEET 5 AB1 5 GLU B 901 ARG B 907 1 O LYS B 903 N TRP B 874 LINK OD1 ASP A 360 MG MG A1002 1555 1555 2.20 LINK OD1 ASN A 393 MG MG A1002 1555 1555 2.03 LINK O VAL A 395 MG MG A1002 1555 1555 2.32 LINK OE1 GLU A 665 CA CA A1004 1555 1555 2.77 LINK MG MG A1002 O1A TPP A1003 1555 1555 2.13 LINK MG MG A1002 O1B TPP A1003 1555 1555 2.10 LINK MG MG A1002 O HOH A1121 1555 1555 2.22 LINK CA CA A1004 OE1 GLU B 665 1555 1555 2.88 LINK OD1 ASP B 360 MG MG B1002 1555 1555 2.25 LINK OD1 ASN B 393 MG MG B1002 1555 1555 2.16 LINK O VAL B 395 MG MG B1002 1555 1555 2.17 LINK MG MG B1002 O1A TPP B1003 1555 1555 2.05 LINK MG MG B1002 O3B TPP B1003 1555 1555 2.14 CISPEP 1 SER A 537 PRO A 538 0 -11.61 CISPEP 2 TYR A 852 PRO A 853 0 -9.42 CISPEP 3 TYR B 852 PRO B 853 0 -10.13 SITE 1 AC1 6 SER A 305 ALA A 318 LEU A 319 SER A 336 SITE 2 AC1 6 MET A 529 ARG A 713 SITE 1 AC2 5 ASP A 360 ASN A 393 VAL A 395 TPP A1003 SITE 2 AC2 5 HOH A1121 SITE 1 AC3 24 HIS A 263 ARG A 264 SER A 324 HIS A 325 SITE 2 AC3 24 LEU A 326 GLY A 359 ASP A 360 SER A 361 SITE 3 AC3 24 ALA A 362 GLN A 366 ASN A 393 VAL A 395 SITE 4 AC3 24 GLY A 396 HIS A 463 MG A1002 HOH A1116 SITE 5 AC3 24 HOH A1121 HOH A1144 HOH A1154 GLN B 619 SITE 6 AC3 24 LEU B 662 GLU B 664 GLN B 688 PHE B 692 SITE 1 AC4 2 GLU A 665 GLU B 665 SITE 1 AC5 8 PHE B 304 SER B 305 ALA B 318 LEU B 319 SITE 2 AC5 8 ALA B 320 SER B 336 MET B 529 ARG B 713 SITE 1 AC6 4 ASP B 360 ASN B 393 VAL B 395 TPP B1003 SITE 1 AC7 21 GLN A 619 LEU A 662 GLU A 664 GLN A 688 SITE 2 AC7 21 PHE A 692 HIS B 263 ARG B 264 SER B 324 SITE 3 AC7 21 HIS B 325 LEU B 326 GLY B 359 ASP B 360 SITE 4 AC7 21 SER B 361 ALA B 362 GLN B 366 ASN B 393 SITE 5 AC7 21 VAL B 395 GLY B 396 HIS B 463 MG B1002 SITE 6 AC7 21 HOH B1109 CRYST1 84.271 76.708 144.579 90.00 100.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011866 0.000000 0.002211 0.00000 SCALE2 0.000000 0.013036 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007036 0.00000