HEADER GENE REGULATION 31-JUL-19 6KMB TITLE CRYSTAL STRUCTURE OF STH1 BROMODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR PROTEIN STH1/NPS1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ATP-DEPENDENT HELICASE STH1,CHROMATIN STRUCTURE-REMODELING COMPND 5 COMPLEX PROTEIN STH1,SNF2 HOMOLOG; COMPND 6 EC: 3.6.4.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: STH1, NPS1, YIL126W; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS CHROMATIN REMODELING, HISTONE ACETYLATION, RSC COMPLEX, STH1, KEYWDS 2 BROMODOMAIN, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR G.CHEN,W.LI,F.YAN,D.WANG,Y.CHEN REVDAT 4 22-NOV-23 6KMB 1 REMARK REVDAT 3 22-JAN-20 6KMB 1 JRNL REVDAT 2 27-NOV-19 6KMB 1 JRNL REVDAT 1 30-OCT-19 6KMB 0 JRNL AUTH G.CHEN,W.LI,F.YAN,D.WANG,Y.CHEN JRNL TITL THE STRUCTURAL BASIS FOR SPECIFIC RECOGNITION OF H3K14 JRNL TITL 2 ACETYLATION BY STH1 IN THE RSC CHROMATIN REMODELING COMPLEX. JRNL REF STRUCTURE V. 28 111 2020 JRNL REFN ISSN 0969-2126 JRNL PMID 31711754 JRNL DOI 10.1016/J.STR.2019.10.015 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29037 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6000 - 5.3328 0.99 2557 124 0.1641 0.1911 REMARK 3 2 5.3328 - 4.2350 1.00 2527 146 0.1569 0.1952 REMARK 3 3 4.2350 - 3.7003 1.00 2499 137 0.1679 0.1897 REMARK 3 4 3.7003 - 3.3623 1.00 2522 139 0.1932 0.2736 REMARK 3 5 3.3623 - 3.1214 1.00 2506 147 0.2176 0.2666 REMARK 3 6 3.1214 - 2.9375 1.00 2496 143 0.2502 0.2919 REMARK 3 7 2.9375 - 2.7904 1.00 2532 126 0.2340 0.2980 REMARK 3 8 2.7904 - 2.6690 1.00 2503 134 0.2421 0.2912 REMARK 3 9 2.6690 - 2.5663 1.00 2511 135 0.2464 0.3082 REMARK 3 10 2.5663 - 2.4778 1.00 2517 127 0.2520 0.3015 REMARK 3 11 2.4778 - 2.4003 0.95 2396 113 0.2601 0.3162 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3762 REMARK 3 ANGLE : 0.610 5076 REMARK 3 CHIRALITY : 0.042 532 REMARK 3 PLANARITY : 0.004 658 REMARK 3 DIHEDRAL : 21.426 2274 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 19 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1249 THROUGH 1275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.3929 69.9553 -4.6568 REMARK 3 T TENSOR REMARK 3 T11: 0.3599 T22: 0.3444 REMARK 3 T33: 0.3345 T12: 0.0523 REMARK 3 T13: 0.1327 T23: -0.0629 REMARK 3 L TENSOR REMARK 3 L11: 7.9544 L22: 6.3209 REMARK 3 L33: 3.9589 L12: -3.7634 REMARK 3 L13: 1.4967 L23: -2.0312 REMARK 3 S TENSOR REMARK 3 S11: 0.1357 S12: 0.5040 S13: -0.0993 REMARK 3 S21: -0.6954 S22: -0.1565 S23: -0.7797 REMARK 3 S31: 0.3466 S32: 0.5938 S33: 0.0868 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1276 THROUGH 1299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.9197 66.7719 12.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.2075 T22: 0.2119 REMARK 3 T33: 0.2421 T12: -0.0405 REMARK 3 T13: -0.0473 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 6.7463 L22: 3.1827 REMARK 3 L33: 7.7508 L12: 2.2705 REMARK 3 L13: -3.7455 L23: -2.5981 REMARK 3 S TENSOR REMARK 3 S11: 0.1534 S12: -0.5110 S13: -0.3182 REMARK 3 S21: 0.1564 S22: -0.2758 S23: 0.0483 REMARK 3 S31: -0.2832 S32: 0.1603 S33: 0.0736 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1300 THROUGH 1332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3950 76.6904 3.7861 REMARK 3 T TENSOR REMARK 3 T11: 0.1595 T22: 0.1937 REMARK 3 T33: 0.2145 T12: 0.0460 REMARK 3 T13: -0.0060 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 4.3445 L22: 2.7850 REMARK 3 L33: 5.2477 L12: 1.3902 REMARK 3 L13: 2.0423 L23: -0.5157 REMARK 3 S TENSOR REMARK 3 S11: -0.1029 S12: -0.0693 S13: 0.1590 REMARK 3 S21: -0.0442 S22: 0.1981 S23: -0.2063 REMARK 3 S31: -0.0680 S32: -0.1377 S33: -0.0593 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1333 THROUGH 1358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.2312 75.6485 3.7666 REMARK 3 T TENSOR REMARK 3 T11: 0.1757 T22: 0.2929 REMARK 3 T33: 0.3420 T12: -0.0010 REMARK 3 T13: 0.0630 T23: -0.0546 REMARK 3 L TENSOR REMARK 3 L11: 5.2760 L22: 7.2948 REMARK 3 L33: 5.8974 L12: -0.8136 REMARK 3 L13: 1.5006 L23: -3.9561 REMARK 3 S TENSOR REMARK 3 S11: -0.2987 S12: 0.0123 S13: 0.2918 REMARK 3 S21: -0.3131 S22: 0.0185 S23: -0.9582 REMARK 3 S31: 0.0162 S32: 0.1192 S33: 0.4094 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1249 THROUGH 1275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.2900 66.5127 50.2647 REMARK 3 T TENSOR REMARK 3 T11: 0.4001 T22: 0.4688 REMARK 3 T33: 0.2805 T12: -0.0282 REMARK 3 T13: 0.0763 T23: 0.0998 REMARK 3 L TENSOR REMARK 3 L11: 5.3539 L22: 3.7199 REMARK 3 L33: 2.8354 L12: 3.0867 REMARK 3 L13: 2.0245 L23: 1.5847 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: -0.6656 S13: -0.2261 REMARK 3 S21: 0.4550 S22: -0.1253 S23: 0.6332 REMARK 3 S31: 0.3999 S32: -0.2480 S33: 0.1232 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1276 THROUGH 1293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.0835 65.0909 32.4028 REMARK 3 T TENSOR REMARK 3 T11: 0.1774 T22: 0.3669 REMARK 3 T33: 0.2731 T12: 0.0239 REMARK 3 T13: -0.0418 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 7.0644 L22: 2.8457 REMARK 3 L33: 3.8245 L12: 1.3800 REMARK 3 L13: -5.1015 L23: -0.6001 REMARK 3 S TENSOR REMARK 3 S11: -0.0906 S12: 0.4961 S13: -0.7911 REMARK 3 S21: -0.1123 S22: -0.3711 S23: -0.1842 REMARK 3 S31: 0.0156 S32: -0.3212 S33: 0.3703 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1294 THROUGH 1332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.1631 76.1242 40.7396 REMARK 3 T TENSOR REMARK 3 T11: 0.2264 T22: 0.2600 REMARK 3 T33: 0.2254 T12: -0.0281 REMARK 3 T13: 0.0098 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 5.2445 L22: 3.0668 REMARK 3 L33: 3.6356 L12: 0.9130 REMARK 3 L13: 3.1882 L23: 1.3526 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.1304 S13: 0.2835 REMARK 3 S21: -0.2258 S22: 0.0155 S23: 0.0920 REMARK 3 S31: -0.1931 S32: 0.1616 S33: -0.0771 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1333 THROUGH 1357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.3733 70.0205 41.5889 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.3767 REMARK 3 T33: 0.3519 T12: -0.0411 REMARK 3 T13: 0.0206 T23: 0.0927 REMARK 3 L TENSOR REMARK 3 L11: 4.9645 L22: 7.7450 REMARK 3 L33: 4.2998 L12: -0.5733 REMARK 3 L13: 0.0586 L23: 1.3930 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: -0.4100 S13: -0.1189 REMARK 3 S21: -0.0696 S22: 0.1207 S23: 0.9002 REMARK 3 S31: -0.1218 S32: -0.6927 S33: 0.0899 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1250 THROUGH 1263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.4827 50.5733 -5.6089 REMARK 3 T TENSOR REMARK 3 T11: 0.9016 T22: 0.5261 REMARK 3 T33: 0.7999 T12: 0.1081 REMARK 3 T13: 0.3246 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 5.5220 L22: 2.5197 REMARK 3 L33: 4.9814 L12: 0.5863 REMARK 3 L13: 0.7849 L23: 2.2303 REMARK 3 S TENSOR REMARK 3 S11: 0.1943 S12: 1.0531 S13: -0.5979 REMARK 3 S21: -1.0025 S22: -0.1274 S23: -1.4349 REMARK 3 S31: 0.0382 S32: 0.4937 S33: 0.1276 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1264 THROUGH 1275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.2948 58.2971 -4.3611 REMARK 3 T TENSOR REMARK 3 T11: 0.7252 T22: 0.3524 REMARK 3 T33: 0.4928 T12: 0.0368 REMARK 3 T13: -0.0509 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 3.9903 L22: 8.1373 REMARK 3 L33: 2.2624 L12: -5.5677 REMARK 3 L13: 0.1705 L23: -0.7544 REMARK 3 S TENSOR REMARK 3 S11: 0.4515 S12: 0.1534 S13: -0.8566 REMARK 3 S21: -1.2017 S22: -0.0648 S23: 0.2701 REMARK 3 S31: -0.0436 S32: -0.2994 S33: -0.1658 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1276 THROUGH 1293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.9578 57.4673 15.4320 REMARK 3 T TENSOR REMARK 3 T11: 0.2769 T22: 0.3948 REMARK 3 T33: 0.4588 T12: 0.0546 REMARK 3 T13: 0.0291 T23: 0.0497 REMARK 3 L TENSOR REMARK 3 L11: 0.8132 L22: 4.1129 REMARK 3 L33: 2.7034 L12: -0.4481 REMARK 3 L13: 0.7636 L23: 2.3956 REMARK 3 S TENSOR REMARK 3 S11: -0.1126 S12: -0.2570 S13: -0.3846 REMARK 3 S21: -0.1498 S22: -0.3999 S23: -0.3079 REMARK 3 S31: 0.2896 S32: -0.5158 S33: 0.4159 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1294 THROUGH 1357 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.2218 47.0486 4.0418 REMARK 3 T TENSOR REMARK 3 T11: 0.5936 T22: 0.2830 REMARK 3 T33: 0.5366 T12: 0.1122 REMARK 3 T13: 0.0941 T23: -0.0523 REMARK 3 L TENSOR REMARK 3 L11: 4.1518 L22: 4.3816 REMARK 3 L33: 3.4974 L12: 1.2817 REMARK 3 L13: -0.3382 L23: 1.0707 REMARK 3 S TENSOR REMARK 3 S11: -0.1918 S12: 0.1350 S13: -0.8390 REMARK 3 S21: -0.6851 S22: 0.0900 S23: -0.4379 REMARK 3 S31: 0.5975 S32: 0.3645 S33: 0.0910 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1251 THROUGH 1264 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.3439 46.8381 51.1827 REMARK 3 T TENSOR REMARK 3 T11: 0.6469 T22: 0.5965 REMARK 3 T33: 0.3803 T12: -0.0498 REMARK 3 T13: 0.0560 T23: 0.1660 REMARK 3 L TENSOR REMARK 3 L11: 4.9989 L22: 6.0634 REMARK 3 L33: 1.5504 L12: 3.4164 REMARK 3 L13: -2.1962 L23: -2.9156 REMARK 3 S TENSOR REMARK 3 S11: 0.3860 S12: -1.3920 S13: -0.3915 REMARK 3 S21: 1.3126 S22: -0.1748 S23: 0.3311 REMARK 3 S31: 0.3211 S32: -0.4943 S33: -0.2077 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1265 THROUGH 1275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.0219 59.1004 49.1661 REMARK 3 T TENSOR REMARK 3 T11: 0.4411 T22: 0.4856 REMARK 3 T33: 0.3731 T12: -0.0145 REMARK 3 T13: -0.0960 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 4.1246 L22: 8.1536 REMARK 3 L33: 8.4668 L12: 3.6796 REMARK 3 L13: -5.8746 L23: -4.6960 REMARK 3 S TENSOR REMARK 3 S11: 0.5152 S12: -0.4339 S13: -0.0968 REMARK 3 S21: 0.4993 S22: -0.4011 S23: -0.7432 REMARK 3 S31: 0.0613 S32: 1.1599 S33: -0.2886 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1276 THROUGH 1293 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.9266 54.5569 30.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.2557 REMARK 3 T33: 0.3000 T12: -0.0223 REMARK 3 T13: -0.0151 T23: 0.0879 REMARK 3 L TENSOR REMARK 3 L11: 1.6736 L22: 2.6507 REMARK 3 L33: 6.4654 L12: 0.2838 REMARK 3 L13: 1.0961 L23: -0.6079 REMARK 3 S TENSOR REMARK 3 S11: -0.0678 S12: -0.1131 S13: -0.0074 REMARK 3 S21: -0.1348 S22: -0.1570 S23: -0.0568 REMARK 3 S31: -0.0519 S32: 0.4593 S33: 0.1770 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1294 THROUGH 1314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.6923 42.8100 38.4815 REMARK 3 T TENSOR REMARK 3 T11: 0.5497 T22: 0.3237 REMARK 3 T33: 0.5163 T12: -0.0715 REMARK 3 T13: 0.0221 T23: 0.1492 REMARK 3 L TENSOR REMARK 3 L11: 2.3537 L22: 4.7191 REMARK 3 L33: 3.7759 L12: -0.2742 REMARK 3 L13: 1.5955 L23: -1.4073 REMARK 3 S TENSOR REMARK 3 S11: -0.1264 S12: -0.5482 S13: -1.0326 REMARK 3 S21: 0.1318 S22: -0.1258 S23: 0.6440 REMARK 3 S31: 0.8128 S32: -0.4276 S33: 0.2761 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1315 THROUGH 1332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 61.4052 43.3112 38.3498 REMARK 3 T TENSOR REMARK 3 T11: 0.4996 T22: 0.3548 REMARK 3 T33: 0.5343 T12: -0.0557 REMARK 3 T13: -0.0200 T23: 0.1493 REMARK 3 L TENSOR REMARK 3 L11: 7.7814 L22: 6.3404 REMARK 3 L33: 5.0602 L12: 3.4555 REMARK 3 L13: -5.2785 L23: -2.1383 REMARK 3 S TENSOR REMARK 3 S11: -0.3201 S12: 0.0557 S13: -0.3621 REMARK 3 S21: -0.2682 S22: 0.3816 S23: -0.1861 REMARK 3 S31: 1.1324 S32: -0.0930 S33: 0.0140 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1333 THROUGH 1337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.6499 55.6405 34.8538 REMARK 3 T TENSOR REMARK 3 T11: 0.3718 T22: 0.4210 REMARK 3 T33: 0.4870 T12: 0.0060 REMARK 3 T13: -0.0338 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 3.8011 L22: 1.6918 REMARK 3 L33: 3.8022 L12: 1.0915 REMARK 3 L13: 3.6682 L23: 1.6622 REMARK 3 S TENSOR REMARK 3 S11: -0.1893 S12: -0.6252 S13: -0.4622 REMARK 3 S21: -0.5495 S22: 0.1012 S23: -0.7414 REMARK 3 S31: -0.0471 S32: 0.6861 S33: 0.0235 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1338 THROUGH 1358 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.9259 46.3519 47.5613 REMARK 3 T TENSOR REMARK 3 T11: 0.6037 T22: 0.4749 REMARK 3 T33: 0.4615 T12: 0.0575 REMARK 3 T13: -0.1449 T23: 0.1138 REMARK 3 L TENSOR REMARK 3 L11: 4.1849 L22: 5.9354 REMARK 3 L33: 5.5334 L12: -0.2866 REMARK 3 L13: -0.1987 L23: -4.0980 REMARK 3 S TENSOR REMARK 3 S11: -0.0296 S12: -0.7866 S13: -0.5505 REMARK 3 S21: 1.1314 S22: 0.0791 S23: -0.3830 REMARK 3 S31: 0.3434 S32: 0.2191 S33: 0.0567 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29241 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.20 REMARK 200 R MERGE FOR SHELL (I) : 0.71300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GRC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE, PH 7.0, 20% W/V REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.97600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.95200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.46400 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 92.44000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.48800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1248 REMARK 465 SER A 1359 REMARK 465 SER B 1248 REMARK 465 SER B 1358 REMARK 465 SER B 1359 REMARK 465 SER C 1248 REMARK 465 LEU C 1249 REMARK 465 SER C 1358 REMARK 465 SER C 1359 REMARK 465 SER D 1248 REMARK 465 LEU D 1249 REMARK 465 GLY D 1250 REMARK 465 SER D 1359 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A1285 CG CD NE CZ NH1 NH2 REMARK 470 ARG B1285 NH1 NH2 REMARK 470 LYS C1308 CD CE NZ REMARK 470 LYS C1313 CG CD CE NZ REMARK 470 ARG D1285 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A1357 -30.13 -130.83 REMARK 500 LYS B1308 18.65 -140.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 1401 DBREF 6KMB A 1248 1359 UNP P32597 STH1_YEAST 1248 1359 DBREF 6KMB B 1248 1359 UNP P32597 STH1_YEAST 1248 1359 DBREF 6KMB C 1248 1359 UNP P32597 STH1_YEAST 1248 1359 DBREF 6KMB D 1248 1359 UNP P32597 STH1_YEAST 1248 1359 SEQRES 1 A 112 SER LEU GLY ILE PHE PRO THR VAL GLU LYS LEU VAL GLU SEQRES 2 A 112 GLU MET ARG GLU GLN LEU ASP GLU VAL ASP SER HIS PRO SEQRES 3 A 112 ARG THR SER ILE PHE GLU LYS LEU PRO SER LYS ARG ASP SEQRES 4 A 112 TYR PRO ASP TYR PHE LYS VAL ILE GLU LYS PRO MET ALA SEQRES 5 A 112 ILE ASP ILE ILE LEU LYS ASN CYS LYS ASN GLY THR TYR SEQRES 6 A 112 LYS THR LEU GLU GLU VAL ARG GLN ALA LEU GLN THR MET SEQRES 7 A 112 PHE GLU ASN ALA ARG PHE TYR ASN GLU GLU GLY SER TRP SEQRES 8 A 112 VAL TYR VAL ASP ALA ASP LYS LEU ASN GLU PHE THR ASP SEQRES 9 A 112 GLU TRP PHE LYS GLU HIS SER SER SEQRES 1 B 112 SER LEU GLY ILE PHE PRO THR VAL GLU LYS LEU VAL GLU SEQRES 2 B 112 GLU MET ARG GLU GLN LEU ASP GLU VAL ASP SER HIS PRO SEQRES 3 B 112 ARG THR SER ILE PHE GLU LYS LEU PRO SER LYS ARG ASP SEQRES 4 B 112 TYR PRO ASP TYR PHE LYS VAL ILE GLU LYS PRO MET ALA SEQRES 5 B 112 ILE ASP ILE ILE LEU LYS ASN CYS LYS ASN GLY THR TYR SEQRES 6 B 112 LYS THR LEU GLU GLU VAL ARG GLN ALA LEU GLN THR MET SEQRES 7 B 112 PHE GLU ASN ALA ARG PHE TYR ASN GLU GLU GLY SER TRP SEQRES 8 B 112 VAL TYR VAL ASP ALA ASP LYS LEU ASN GLU PHE THR ASP SEQRES 9 B 112 GLU TRP PHE LYS GLU HIS SER SER SEQRES 1 C 112 SER LEU GLY ILE PHE PRO THR VAL GLU LYS LEU VAL GLU SEQRES 2 C 112 GLU MET ARG GLU GLN LEU ASP GLU VAL ASP SER HIS PRO SEQRES 3 C 112 ARG THR SER ILE PHE GLU LYS LEU PRO SER LYS ARG ASP SEQRES 4 C 112 TYR PRO ASP TYR PHE LYS VAL ILE GLU LYS PRO MET ALA SEQRES 5 C 112 ILE ASP ILE ILE LEU LYS ASN CYS LYS ASN GLY THR TYR SEQRES 6 C 112 LYS THR LEU GLU GLU VAL ARG GLN ALA LEU GLN THR MET SEQRES 7 C 112 PHE GLU ASN ALA ARG PHE TYR ASN GLU GLU GLY SER TRP SEQRES 8 C 112 VAL TYR VAL ASP ALA ASP LYS LEU ASN GLU PHE THR ASP SEQRES 9 C 112 GLU TRP PHE LYS GLU HIS SER SER SEQRES 1 D 112 SER LEU GLY ILE PHE PRO THR VAL GLU LYS LEU VAL GLU SEQRES 2 D 112 GLU MET ARG GLU GLN LEU ASP GLU VAL ASP SER HIS PRO SEQRES 3 D 112 ARG THR SER ILE PHE GLU LYS LEU PRO SER LYS ARG ASP SEQRES 4 D 112 TYR PRO ASP TYR PHE LYS VAL ILE GLU LYS PRO MET ALA SEQRES 5 D 112 ILE ASP ILE ILE LEU LYS ASN CYS LYS ASN GLY THR TYR SEQRES 6 D 112 LYS THR LEU GLU GLU VAL ARG GLN ALA LEU GLN THR MET SEQRES 7 D 112 PHE GLU ASN ALA ARG PHE TYR ASN GLU GLU GLY SER TRP SEQRES 8 D 112 VAL TYR VAL ASP ALA ASP LYS LEU ASN GLU PHE THR ASP SEQRES 9 D 112 GLU TRP PHE LYS GLU HIS SER SER HET GOL B1401 6 HET GOL C1401 6 HET GOL D1401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 HOH *81(H2 O) HELIX 1 AA1 GLY A 1250 GLU A 1264 1 15 HELIX 2 AA2 THR A 1275 GLU A 1279 5 5 HELIX 3 AA3 ASP A 1289 ILE A 1294 1 6 HELIX 4 AA4 ALA A 1299 CYS A 1307 1 9 HELIX 5 AA5 THR A 1314 ASN A 1333 1 20 HELIX 6 AA6 SER A 1337 GLU A 1356 1 20 HELIX 7 AA7 GLY B 1250 GLU B 1264 1 15 HELIX 8 AA8 THR B 1275 GLU B 1279 5 5 HELIX 9 AA9 TYR B 1287 ILE B 1294 1 8 HELIX 10 AB1 ALA B 1299 CYS B 1307 1 9 HELIX 11 AB2 THR B 1314 ASN B 1333 1 20 HELIX 12 AB3 SER B 1337 GLU B 1356 1 20 HELIX 13 AB4 ILE C 1251 GLU C 1264 1 14 HELIX 14 AB5 THR C 1275 GLU C 1279 5 5 HELIX 15 AB6 TYR C 1287 ILE C 1294 1 8 HELIX 16 AB7 ALA C 1299 ASN C 1309 1 11 HELIX 17 AB8 THR C 1314 ASN C 1333 1 20 HELIX 18 AB9 SER C 1337 GLU C 1356 1 20 HELIX 19 AC1 PHE D 1252 ARG D 1263 1 12 HELIX 20 AC2 THR D 1275 GLU D 1279 5 5 HELIX 21 AC3 TYR D 1287 ILE D 1294 1 8 HELIX 22 AC4 ALA D 1299 ASN D 1309 1 11 HELIX 23 AC5 THR D 1314 ASN D 1333 1 20 HELIX 24 AC6 SER D 1337 HIS D 1357 1 21 SITE 1 AC1 5 TYR B1290 ASN B1328 ALA B1329 ASN B1333 SITE 2 AC1 5 HOH B1503 SITE 1 AC2 5 ILE C1277 LYS C1280 PRO C1282 TYR C1290 SITE 2 AC2 5 ASN C1333 SITE 1 AC3 6 PRO D1282 TYR D1290 ASN D1328 ALA D1329 SITE 2 AC3 6 ASN D1333 HOH D1508 CRYST1 108.855 108.855 110.928 90.00 90.00 120.00 P 61 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009187 0.005304 0.000000 0.00000 SCALE2 0.000000 0.010608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009015 0.00000