HEADER TRANSFERASE 05-AUG-19 6KNL TITLE URIDINE AND TRIPHOSPHATE-BOUND UGPASE FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UDP-GLUCOSE PYROPHOSPHORYLASE; COMPND 5 EC: 2.7.7.9; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII; SOURCE 3 ORGANISM_TAXID: 470; SOURCE 4 GENE: GALU, B9X91_19205, CBI29_00108, CSB70_3798, DVA79_14980; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS UGPASE, ROSSMAN FOLD, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.LEE,L.W.KANG REVDAT 2 22-NOV-23 6KNL 1 REMARK REVDAT 1 12-AUG-20 6KNL 0 JRNL AUTH L.W.KANG JRNL TITL URIDINE AND TRIPHOSPHATE-BOUND UGPASE FROM ACINETOBACTER JRNL TITL 2 BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32805 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1721 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2345 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.53 REMARK 3 BIN R VALUE (WORKING SET) : 0.3860 REMARK 3 BIN FREE R VALUE SET COUNT : 130 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4383 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 32 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.289 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.241 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.826 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4523 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4271 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6128 ; 1.512 ; 1.639 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9932 ; 1.248 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 578 ; 7.480 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 196 ;34.626 ;24.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 779 ;18.883 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;22.567 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 603 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4956 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 800 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6KNL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013347. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 5.8.0238 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34574 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.47900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5J49 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM CITRATE, 0.1M BIS-TRIS REMARK 280 PH 6.13 AND 0.1M NACL, PH 7.5, EVAPORATION, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.18700 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.73200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.73200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.09350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.73200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.73200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.28050 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.73200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.73200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.09350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.73200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.73200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.28050 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 54.18700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 27 CG2 REMARK 470 THR A 28 CG2 REMARK 470 ILE A 87 CD1 REMARK 470 THR A 88 CG2 REMARK 470 GLU A 93 CG CD OE1 OE2 REMARK 470 ASP A 122 OD2 REMARK 470 LEU A 127 CD2 REMARK 470 SER A 143 OG REMARK 470 TYR A 149 OH REMARK 470 ILE A 172 CD1 REMARK 470 PRO A 179 CD REMARK 470 ILE A 185 CD1 REMARK 470 GLN A 188 CD OE1 NE2 REMARK 470 ILE A 190 CD1 REMARK 470 LEU A 264 CD2 REMARK 470 LEU A 272 CD2 REMARK 470 ILE A 285 CG2 REMARK 470 LEU A 286 CD2 REMARK 470 LEU A 288 CD2 REMARK 470 ILE B 1 CD1 REMARK 470 THR B 74 CG2 REMARK 470 GLN B 89 CG CD OE1 NE2 REMARK 470 VAL B 91 CG2 REMARK 470 LEU B 106 CD1 REMARK 470 GLU B 121 OE1 OE2 REMARK 470 LEU B 127 CD1 REMARK 470 TYR B 149 OH REMARK 470 ILE B 157 CG2 REMARK 470 VAL B 175 CG2 REMARK 470 PRO B 179 CD REMARK 470 GLU B 181 OE1 OE2 REMARK 470 ILE B 185 CD1 REMARK 470 PRO B 195 CD REMARK 470 SER B 204 OG REMARK 470 GLU B 229 CG CD OE1 OE2 REMARK 470 LEU B 264 CD2 REMARK 470 VAL B 267 CG1 REMARK 470 LEU B 272 CD2 REMARK 470 LYS B 276 CD CE NZ REMARK 470 LEU B 288 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR B 13 O2B 3PO B 302 1.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 15 59.31 -117.91 REMARK 500 VAL A 30 -73.57 73.42 REMARK 500 LYS A 80 40.35 -81.18 REMARK 500 ASP A 135 -160.39 -104.10 REMARK 500 GLN A 139 109.58 66.86 REMARK 500 LYS A 214 -39.65 -36.19 REMARK 500 CYS A 257 36.59 -79.49 REMARK 500 VAL B 30 -74.22 75.76 REMARK 500 ASP B 31 10.99 -147.45 REMARK 500 LEU B 106 36.64 -90.48 REMARK 500 SER B 147 -39.89 -37.42 REMARK 500 GLU B 181 109.71 -41.37 REMARK 500 ALA B 226 47.71 -92.88 REMARK 500 GLU B 229 -95.96 0.35 REMARK 500 THR B 242 -48.05 -140.87 REMARK 500 PRO B 275 -71.32 -41.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 230 GLN A 231 -146.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URI B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3PO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 305 DBREF 6KNL A 0 289 UNP X2KZJ9 X2KZJ9_ACIBA 1 290 DBREF 6KNL B 0 289 UNP X2KZJ9 X2KZJ9_ACIBA 1 290 SEQADV 6KNL LEU A 286 UNP X2KZJ9 GLN 287 ENGINEERED MUTATION SEQADV 6KNL LEU B 286 UNP X2KZJ9 GLN 287 ENGINEERED MUTATION SEQRES 1 A 290 MET ILE LYS LYS ALA VAL LEU PRO VAL ALA GLY LEU GLY SEQRES 2 A 290 THR ARG PHE LEU PRO ALA SER LYS SER ILE PRO LYS GLU SEQRES 3 A 290 MET VAL THR VAL VAL ASP ARG PRO ALA ILE GLU TYR VAL SEQRES 4 A 290 VAL ARG GLU ALA VAL GLU ALA GLY ILE GLU GLN ILE ILE SEQRES 5 A 290 LEU VAL THR HIS SER SER LYS ALA SER ILE GLU ASN TYR SEQRES 6 A 290 PHE ASP ARG ASN PHE GLU LEU GLU THR THR LEU GLU GLN SEQRES 7 A 290 LYS LYS LYS PHE ASP LEU LEU ALA GLU ILE THR GLN ILE SEQRES 8 A 290 VAL PRO GLU HIS VAL SER VAL ILE SER VAL ARG GLN PRO SEQRES 9 A 290 GLN PRO LEU GLY LEU GLY HIS ALA VAL LEU CYS ALA LYS SEQRES 10 A 290 SER VAL VAL GLY GLU ASP ASP PHE ALA VAL LEU LEU PRO SEQRES 11 A 290 ASP VAL LEU VAL LYS ASP GLY SER GLY GLN ASN ASP LEU SEQRES 12 A 290 SER ARG MET ILE SER ARG TYR ASN SER SER GLN ALA ALA SEQRES 13 A 290 GLN ILE MET VAL GLU ALA VAL PRO ASP HIS LEU VAL ASP SEQRES 14 A 290 GLN TYR GLY ILE VAL ASP VAL ALA GLN SER PRO ASN GLU SEQRES 15 A 290 GLY GLU SER ILE ALA MET GLN GLY ILE VAL GLU LYS PRO SEQRES 16 A 290 PRO VAL GLY ALA ALA PRO SER ASN LEU SER VAL VAL GLY SEQRES 17 A 290 ARG TYR VAL LEU PRO ALA LYS ILE MET GLN LEU LEU GLU SEQRES 18 A 290 ASN THR PRO LYS GLY ALA GLY ASN GLU ILE GLN LEU THR SEQRES 19 A 290 ASP ALA ILE ALA MET LEU GLN ASP THR ASP THR VAL GLU SEQRES 20 A 290 ALA TYR ARG MET GLN GLY GLN THR PHE ASP CYS GLY SER SEQRES 21 A 290 LYS LEU GLY TYR LEU LYS ALA VAL LEU HIS TYR GLY LEU SEQRES 22 A 290 GLU HIS PRO LYS LEU GLY MET GLU PHE LYS GLN LEU ILE SEQRES 23 A 290 LEU GLU LEU LYS SEQRES 1 B 290 MET ILE LYS LYS ALA VAL LEU PRO VAL ALA GLY LEU GLY SEQRES 2 B 290 THR ARG PHE LEU PRO ALA SER LYS SER ILE PRO LYS GLU SEQRES 3 B 290 MET VAL THR VAL VAL ASP ARG PRO ALA ILE GLU TYR VAL SEQRES 4 B 290 VAL ARG GLU ALA VAL GLU ALA GLY ILE GLU GLN ILE ILE SEQRES 5 B 290 LEU VAL THR HIS SER SER LYS ALA SER ILE GLU ASN TYR SEQRES 6 B 290 PHE ASP ARG ASN PHE GLU LEU GLU THR THR LEU GLU GLN SEQRES 7 B 290 LYS LYS LYS PHE ASP LEU LEU ALA GLU ILE THR GLN ILE SEQRES 8 B 290 VAL PRO GLU HIS VAL SER VAL ILE SER VAL ARG GLN PRO SEQRES 9 B 290 GLN PRO LEU GLY LEU GLY HIS ALA VAL LEU CYS ALA LYS SEQRES 10 B 290 SER VAL VAL GLY GLU ASP ASP PHE ALA VAL LEU LEU PRO SEQRES 11 B 290 ASP VAL LEU VAL LYS ASP GLY SER GLY GLN ASN ASP LEU SEQRES 12 B 290 SER ARG MET ILE SER ARG TYR ASN SER SER GLN ALA ALA SEQRES 13 B 290 GLN ILE MET VAL GLU ALA VAL PRO ASP HIS LEU VAL ASP SEQRES 14 B 290 GLN TYR GLY ILE VAL ASP VAL ALA GLN SER PRO ASN GLU SEQRES 15 B 290 GLY GLU SER ILE ALA MET GLN GLY ILE VAL GLU LYS PRO SEQRES 16 B 290 PRO VAL GLY ALA ALA PRO SER ASN LEU SER VAL VAL GLY SEQRES 17 B 290 ARG TYR VAL LEU PRO ALA LYS ILE MET GLN LEU LEU GLU SEQRES 18 B 290 ASN THR PRO LYS GLY ALA GLY ASN GLU ILE GLN LEU THR SEQRES 19 B 290 ASP ALA ILE ALA MET LEU GLN ASP THR ASP THR VAL GLU SEQRES 20 B 290 ALA TYR ARG MET GLN GLY GLN THR PHE ASP CYS GLY SER SEQRES 21 B 290 LYS LEU GLY TYR LEU LYS ALA VAL LEU HIS TYR GLY LEU SEQRES 22 B 290 GLU HIS PRO LYS LEU GLY MET GLU PHE LYS GLN LEU ILE SEQRES 23 B 290 LEU GLU LEU LYS HET URI A 301 17 HET 3PO A 302 13 HET URI B 301 17 HET 3PO B 302 13 HET SO4 B 303 5 HET SO4 B 304 5 HET EDO B 305 4 HETNAM URI URIDINE HETNAM 3PO TRIPHOSPHATE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 URI 2(C9 H12 N2 O6) FORMUL 4 3PO 2(H5 O10 P3) FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 EDO C2 H6 O2 FORMUL 10 HOH *32(H2 O) HELIX 1 AA1 GLY A 12 LEU A 16 5 5 HELIX 2 AA2 PRO A 23 MET A 26 5 4 HELIX 3 AA3 ALA A 34 ALA A 45 1 12 HELIX 4 AA4 LYS A 58 PHE A 65 1 8 HELIX 5 AA5 ASN A 68 GLN A 77 1 10 HELIX 6 AA6 LYS A 80 GLN A 89 1 10 HELIX 7 AA7 GLY A 107 ALA A 115 1 9 HELIX 8 AA8 ALA A 115 GLY A 120 1 6 HELIX 9 AA9 ASN A 140 GLN A 153 1 14 HELIX 10 AB1 PRO A 163 GLN A 169 5 7 HELIX 11 AB2 LYS A 214 GLU A 220 1 7 HELIX 12 AB3 GLY A 225 GLU A 229 5 5 HELIX 13 AB4 GLN A 231 GLN A 240 1 10 HELIX 14 AB5 SER A 259 HIS A 274 1 16 HELIX 15 AB6 LEU A 277 GLU A 287 1 11 HELIX 16 AB7 GLY B 12 LEU B 16 5 5 HELIX 17 AB8 PRO B 23 MET B 26 5 4 HELIX 18 AB9 ALA B 34 GLU B 44 1 11 HELIX 19 AC1 LYS B 58 PHE B 65 1 8 HELIX 20 AC2 ASN B 68 LYS B 78 1 11 HELIX 21 AC3 LYS B 80 GLN B 89 1 10 HELIX 22 AC4 GLY B 107 ALA B 115 1 9 HELIX 23 AC5 ALA B 115 GLY B 120 1 6 HELIX 24 AC6 ASN B 140 GLN B 153 1 14 HELIX 25 AC7 PRO B 163 GLN B 169 5 7 HELIX 26 AC8 LYS B 214 ASN B 221 1 8 HELIX 27 AC9 GLN B 231 ASP B 241 1 11 HELIX 28 AD1 SER B 259 GLU B 273 1 15 HELIX 29 AD2 LEU B 277 GLU B 287 1 11 SHEET 1 AA1 8 SER A 96 ARG A 101 0 SHEET 2 AA1 8 GLN A 49 THR A 54 1 N THR A 54 O VAL A 100 SHEET 3 AA1 8 LYS A 3 PRO A 7 1 N LEU A 6 O ILE A 51 SHEET 4 AA1 8 PHE A 124 LEU A 127 1 O ALA A 125 N VAL A 5 SHEET 5 AA1 8 LEU A 203 LEU A 211 -1 O LEU A 211 N PHE A 124 SHEET 6 AA1 8 ALA A 155 ALA A 161 -1 N GLU A 160 O SER A 204 SHEET 7 AA1 8 VAL A 245 ARG A 249 1 O GLU A 246 N ALA A 155 SHEET 8 AA1 8 SER A 184 ALA A 186 -1 N ILE A 185 O ALA A 247 SHEET 1 AA2 2 THR A 28 VAL A 29 0 SHEET 2 AA2 2 ARG A 32 PRO A 33 -1 O ARG A 32 N VAL A 29 SHEET 1 AA3 2 VAL A 131 LYS A 134 0 SHEET 2 AA3 2 GLN A 253 ASP A 256 -1 O PHE A 255 N LEU A 132 SHEET 1 AA4 2 GLY A 171 VAL A 173 0 SHEET 2 AA4 2 ILE A 190 GLU A 192 -1 O VAL A 191 N ILE A 172 SHEET 1 AA5 8 SER B 96 ARG B 101 0 SHEET 2 AA5 8 GLN B 49 THR B 54 1 N THR B 54 O VAL B 100 SHEET 3 AA5 8 LYS B 3 PRO B 7 1 N ALA B 4 O ILE B 51 SHEET 4 AA5 8 PHE B 124 LEU B 127 1 O ALA B 125 N LYS B 3 SHEET 5 AA5 8 LEU B 203 LEU B 211 -1 O LEU B 211 N PHE B 124 SHEET 6 AA5 8 ALA B 155 ALA B 161 -1 N GLU B 160 O SER B 204 SHEET 7 AA5 8 VAL B 245 ARG B 249 1 O GLU B 246 N ALA B 155 SHEET 8 AA5 8 SER B 184 ALA B 186 -1 N ILE B 185 O ALA B 247 SHEET 1 AA6 2 THR B 28 VAL B 29 0 SHEET 2 AA6 2 ARG B 32 PRO B 33 -1 O ARG B 32 N VAL B 29 SHEET 1 AA7 2 VAL B 131 LYS B 134 0 SHEET 2 AA7 2 GLN B 253 ASP B 256 -1 O PHE B 255 N LEU B 132 SHEET 1 AA8 2 GLY B 171 ASP B 174 0 SHEET 2 AA8 2 GLY B 189 GLU B 192 -1 O GLY B 189 N ASP B 174 CISPEP 1 LEU A 16 PRO A 17 0 -1.05 CISPEP 2 LEU B 16 PRO B 17 0 2.09 SITE 1 AC1 10 PRO A 7 GLY A 10 LYS A 24 GLN A 102 SITE 2 AC1 10 PRO A 105 LEU A 106 GLY A 107 LEU A 108 SITE 3 AC1 10 PRO A 129 ASP A 130 SITE 1 AC2 6 LEU A 11 GLY A 12 THR A 13 ARG A 14 SITE 2 AC2 6 LYS B 78 LYS B 80 SITE 1 AC3 9 PRO B 7 ALA B 9 GLY B 10 LYS B 24 SITE 2 AC3 9 GLN B 102 PRO B 105 LEU B 106 GLY B 107 SITE 3 AC3 9 LEU B 108 SITE 1 AC4 5 LYS A 78 LYS A 80 GLY B 12 THR B 13 SITE 2 AC4 5 ARG B 14 SITE 1 AC5 5 SER B 56 SER B 57 LYS B 58 ALA B 59 SITE 2 AC5 5 HOH B 410 SITE 1 AC6 1 PHE B 81 SITE 1 AC7 3 LYS A 20 ASN B 68 GLU B 70 CRYST1 119.464 119.464 108.374 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008371 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009227 0.00000