HEADER HYDROLASE 23-AUG-19 6KS5 TITLE CRYSTAL STRUCTURE OF LEGIONELLA PNEUMOPHILA DEUBIQUITINASE CEG23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYPE IV SECRETION PROTEIN DOT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: C3927_07335; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.Z.QIU,S.Y.OUYANG REVDAT 3 27-MAR-24 6KS5 1 REMARK REVDAT 2 04-MAR-20 6KS5 1 JRNL REVDAT 1 15-JAN-20 6KS5 0 JRNL AUTH K.MA,X.ZHEN,B.ZHOU,N.GAN,Y.CAO,C.FAN,S.OUYANG,Z.Q.LUO,J.QIU JRNL TITL THE BACTERIAL DEUBIQUITINASE CEG23 REGULATES THE ASSOCIATION JRNL TITL 2 OF LYS-63-LINKED POLYUBIQUITIN MOLECULES ON JRNL TITL 3 THELEGIONELLAPHAGOSOME. JRNL REF J.BIOL.CHEM. V. 295 1646 2020 JRNL REFN ESSN 1083-351X JRNL PMID 31907282 JRNL DOI 10.1074/JBC.RA119.011758 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 17418 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.275 REMARK 3 R VALUE (WORKING SET) : 0.274 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.170 REMARK 3 FREE R VALUE TEST SET COUNT : 901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4410 - 5.0852 0.99 2905 158 0.2473 0.2363 REMARK 3 2 5.0852 - 4.0374 1.00 2793 150 0.2481 0.3263 REMARK 3 3 4.0374 - 3.5274 0.99 2755 137 0.2893 0.3217 REMARK 3 4 3.5274 - 3.2050 0.99 2713 160 0.3409 0.3756 REMARK 3 5 3.2050 - 2.9754 0.99 2685 152 0.3430 0.3350 REMARK 3 6 2.9754 - 2.8000 0.97 2666 144 0.3566 0.3487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6248 15.1913 -19.2563 REMARK 3 T TENSOR REMARK 3 T11: 0.8758 T22: 0.9769 REMARK 3 T33: 0.6264 T12: 0.1443 REMARK 3 T13: 0.1325 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 1.9284 L22: 2.2759 REMARK 3 L33: 2.3918 L12: 0.2789 REMARK 3 L13: 1.5734 L23: -1.5709 REMARK 3 S TENSOR REMARK 3 S11: -0.2727 S12: -0.7088 S13: -0.1350 REMARK 3 S21: -0.1489 S22: -0.3327 S23: 0.3982 REMARK 3 S31: -1.2026 S32: -0.9475 S33: 0.1465 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4116 -1.7086 -43.2829 REMARK 3 T TENSOR REMARK 3 T11: 0.3411 T22: 0.5026 REMARK 3 T33: 0.4355 T12: -0.0023 REMARK 3 T13: 0.0215 T23: -0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.4410 L22: 7.8474 REMARK 3 L33: 7.8401 L12: -4.3528 REMARK 3 L13: 1.4811 L23: 2.5547 REMARK 3 S TENSOR REMARK 3 S11: 0.2794 S12: 0.1036 S13: 0.0452 REMARK 3 S21: -0.2240 S22: -0.0949 S23: -0.2040 REMARK 3 S31: 0.5233 S32: 0.3122 S33: -0.1075 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8128 20.9455 -33.3393 REMARK 3 T TENSOR REMARK 3 T11: 0.9022 T22: 0.7346 REMARK 3 T33: 0.5241 T12: 0.1920 REMARK 3 T13: 0.0823 T23: -0.0780 REMARK 3 L TENSOR REMARK 3 L11: 2.9040 L22: 7.1201 REMARK 3 L33: 3.4936 L12: 3.3962 REMARK 3 L13: -0.0421 L23: -2.6037 REMARK 3 S TENSOR REMARK 3 S11: -0.3893 S12: -0.0977 S13: 0.6037 REMARK 3 S21: 0.0496 S22: 0.2258 S23: 0.3032 REMARK 3 S31: -1.2386 S32: -0.4144 S33: 0.3551 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 280 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3076 19.0962 -11.7162 REMARK 3 T TENSOR REMARK 3 T11: 0.9327 T22: 0.7894 REMARK 3 T33: 0.5078 T12: -0.1304 REMARK 3 T13: -0.0951 T23: -0.0181 REMARK 3 L TENSOR REMARK 3 L11: 4.7116 L22: 6.0109 REMARK 3 L33: 4.3593 L12: 0.7680 REMARK 3 L13: -3.6038 L23: 1.3804 REMARK 3 S TENSOR REMARK 3 S11: 0.3712 S12: -0.5742 S13: 0.0881 REMARK 3 S21: -1.4208 S22: -0.6762 S23: 0.1235 REMARK 3 S31: -1.5832 S32: 0.5737 S33: 0.4239 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.2330 19.7935 -75.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.4425 T22: 0.6731 REMARK 3 T33: 0.7604 T12: -0.0025 REMARK 3 T13: -0.1390 T23: 0.0854 REMARK 3 L TENSOR REMARK 3 L11: 0.5805 L22: 8.0649 REMARK 3 L33: 4.7909 L12: -0.0160 REMARK 3 L13: 0.5018 L23: -2.0365 REMARK 3 S TENSOR REMARK 3 S11: -0.1347 S12: 0.3315 S13: 0.6063 REMARK 3 S21: 0.1990 S22: 0.0592 S23: 0.6359 REMARK 3 S31: -0.4770 S32: 0.1094 S33: 0.1452 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8595 34.7050 -54.5757 REMARK 3 T TENSOR REMARK 3 T11: 0.8700 T22: 0.5952 REMARK 3 T33: 0.7628 T12: 0.1217 REMARK 3 T13: -0.0599 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 3.0910 L22: 3.8967 REMARK 3 L33: 2.6207 L12: 3.7627 REMARK 3 L13: 2.4625 L23: 2.3403 REMARK 3 S TENSOR REMARK 3 S11: -0.4442 S12: -0.0666 S13: 0.0485 REMARK 3 S21: 0.6311 S22: 0.2727 S23: 0.2904 REMARK 3 S31: -0.4899 S32: 0.2639 S33: 0.2430 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 279 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.0670 9.7247 -60.6853 REMARK 3 T TENSOR REMARK 3 T11: 0.5700 T22: 0.5881 REMARK 3 T33: 0.5081 T12: 0.1405 REMARK 3 T13: 0.0592 T23: 0.0663 REMARK 3 L TENSOR REMARK 3 L11: 8.8666 L22: 6.0152 REMARK 3 L33: 9.2406 L12: -0.0940 REMARK 3 L13: 0.9290 L23: -1.8928 REMARK 3 S TENSOR REMARK 3 S11: -0.0353 S12: -0.4701 S13: -0.0667 REMARK 3 S21: 0.4667 S22: 0.4347 S23: 0.2825 REMARK 3 S31: -0.0450 S32: 0.0400 S33: -0.4080 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 280 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8908 14.8211 -84.7218 REMARK 3 T TENSOR REMARK 3 T11: 0.7096 T22: 0.8853 REMARK 3 T33: 0.5545 T12: -0.0309 REMARK 3 T13: 0.0021 T23: 0.0975 REMARK 3 L TENSOR REMARK 3 L11: 5.7790 L22: 5.9073 REMARK 3 L33: 6.6600 L12: -0.4851 REMARK 3 L13: 4.5477 L23: -1.0586 REMARK 3 S TENSOR REMARK 3 S11: -0.1957 S12: 1.2367 S13: 0.4382 REMARK 3 S21: -0.1439 S22: -0.3263 S23: -0.9074 REMARK 3 S31: 0.3137 S32: 0.8885 S33: 0.4695 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KS5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979191 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17475 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 64.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : 0.12800 REMARK 200 FOR THE DATA SET : 2.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% POLYETHYLENE GLYCOL 4000, 0.2 M REMARK 280 SODIUM CACODYLATE (PH 6.0) AND 0.2 M NACL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.67500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.43500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.80500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.43500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.67500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.80500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 LYS A 5 REMARK 465 ASP A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 VAL A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 LEU A 12 REMARK 465 GLN A 13 REMARK 465 GLU A 14 REMARK 465 GLU A 73 REMARK 465 ILE A 80 REMARK 465 LEU A 81 REMARK 465 ASP A 82 REMARK 465 LYS A 83 REMARK 465 GLU A 84 REMARK 465 ASN A 85 REMARK 465 ASP A 86 REMARK 465 VAL A 87 REMARK 465 SER A 88 REMARK 465 GLU A 89 REMARK 465 PRO A 90 REMARK 465 SER A 91 REMARK 465 GLY A 92 REMARK 465 ASP A 180 REMARK 465 ASP A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 302 REMARK 465 HIS A 303 REMARK 465 SER A 304 REMARK 465 ASP A 305 REMARK 465 LYS A 306 REMARK 465 ASN A 338 REMARK 465 SER A 339 REMARK 465 LEU A 340 REMARK 465 SER A 341 REMARK 465 GLN A 342 REMARK 465 ILE A 343 REMARK 465 ASP A 344 REMARK 465 THR A 345 REMARK 465 ASN A 346 REMARK 465 LEU A 347 REMARK 465 LYS A 348 REMARK 465 ASN A 349 REMARK 465 GLU A 350 REMARK 465 ASN A 351 REMARK 465 THR A 352 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 THR B 3 REMARK 465 LYS B 4 REMARK 465 LYS B 5 REMARK 465 ASP B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 VAL B 9 REMARK 465 ILE B 10 REMARK 465 ASN B 59 REMARK 465 LEU B 81 REMARK 465 ASP B 82 REMARK 465 LYS B 83 REMARK 465 GLU B 84 REMARK 465 ASN B 85 REMARK 465 ASP B 86 REMARK 465 VAL B 87 REMARK 465 SER B 88 REMARK 465 GLU B 89 REMARK 465 PRO B 90 REMARK 465 SER B 91 REMARK 465 GLU B 336 REMARK 465 ILE B 337 REMARK 465 ASN B 338 REMARK 465 SER B 339 REMARK 465 LEU B 340 REMARK 465 SER B 341 REMARK 465 GLN B 342 REMARK 465 ILE B 343 REMARK 465 ASP B 344 REMARK 465 THR B 345 REMARK 465 ASN B 346 REMARK 465 LEU B 347 REMARK 465 LYS B 348 REMARK 465 ASN B 349 REMARK 465 GLU B 350 REMARK 465 ASN B 351 REMARK 465 THR B 352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 19 CB REMARK 470 LEU A 45 CG CD1 CD2 REMARK 470 ASP A 47 CG OD1 OD2 REMARK 470 HIS A 51 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 ASN A 57 CG OD1 ND2 REMARK 470 ARG A 58 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 HIS A 70 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 71 CG OD1 ND2 REMARK 470 ASN A 76 CG OD1 ND2 REMARK 470 LEU A 77 CG CD1 CD2 REMARK 470 PHE A 78 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 79 OG REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 GLN A 112 CG CD OE1 NE2 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 LYS A 128 CG CD CE NZ REMARK 470 ILE A 177 CG1 CG2 CD1 REMARK 470 ASN A 178 CG OD1 ND2 REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 SER A 181 OG REMARK 470 ASP A 193 CG OD1 OD2 REMARK 470 GLU A 194 CG CD OE1 OE2 REMARK 470 GLU A 195 CG CD OE1 OE2 REMARK 470 GLN A 217 CG CD OE1 NE2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 ARG A 241 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 257 CG CD1 CD2 REMARK 470 ASP A 259 CG OD1 OD2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 GLU A 277 CG CD OE1 OE2 REMARK 470 GLU A 278 CG CD OE1 OE2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 LEU A 283 CG CD1 CD2 REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 470 GLU A 285 CG CD OE1 OE2 REMARK 470 TYR A 286 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 ARG A 288 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 292 CG CD OE1 NE2 REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 GLU A 299 CG CD OE1 OE2 REMARK 470 LEU A 301 CG CD1 CD2 REMARK 470 VAL A 308 CG1 CG2 REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 336 CG CD OE1 OE2 REMARK 470 ILE A 337 CG1 CG2 CD1 REMARK 470 SER B 11 OG REMARK 470 LEU B 12 CG CD1 CD2 REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 GLU B 14 CG CD OE1 OE2 REMARK 470 ARG B 15 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 16 CG1 CG2 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 ASN B 18 CG OD1 ND2 REMARK 470 ASP B 47 CG OD1 OD2 REMARK 470 ARG B 58 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 ILE B 80 CG1 CG2 CD1 REMARK 470 LEU B 99 CG CD1 CD2 REMARK 470 ASN B 115 CG OD1 ND2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 GLU B 122 CG CD OE1 OE2 REMARK 470 LEU B 124 CG CD1 CD2 REMARK 470 GLU B 125 CG CD OE1 OE2 REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 SER B 151 OG REMARK 470 GLU B 153 CG CD OE1 OE2 REMARK 470 GLU B 162 CG CD OE1 OE2 REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 ASP B 180 CG OD1 OD2 REMARK 470 GLU B 184 CG CD OE1 OE2 REMARK 470 LYS B 185 CG CD CE NZ REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 VAL B 255 CG1 CG2 REMARK 470 ASN B 256 CG OD1 ND2 REMARK 470 LEU B 257 CG CD1 CD2 REMARK 470 ASP B 265 CG OD1 OD2 REMARK 470 LEU B 267 CG CD1 CD2 REMARK 470 HIS B 303 CG ND1 CD2 CE1 NE2 REMARK 470 SER B 304 OG REMARK 470 ASP B 305 CG OD1 OD2 REMARK 470 LYS B 306 CG CD CE NZ REMARK 470 ARG B 314 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 332 CG CD OE1 OE2 REMARK 470 LEU B 334 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 325 N PHE B 327 1.24 REMARK 500 OH TYR A 167 OE1 GLU A 184 2.15 REMARK 500 OG1 THR A 243 OG SER A 245 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG1 THR A 175 O SER A 298 3544 2.13 REMARK 500 O ASN A 57 OG SER B 309 2455 2.17 REMARK 500 O SER A 174 NZ LYS B 179 1545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 326 C - N - CD ANGL. DEV. = -26.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 25.95 49.33 REMARK 500 LEU A 94 -32.61 -130.84 REMARK 500 SER A 244 15.78 58.62 REMARK 500 LEU A 312 34.26 -98.22 REMARK 500 PRO A 326 -35.82 -26.13 REMARK 500 LEU B 12 -78.09 -96.83 REMARK 500 GLN B 13 -30.24 -149.05 REMARK 500 ARG B 15 47.93 -79.78 REMARK 500 ASN B 28 32.19 -92.24 REMARK 500 HIS B 51 17.59 -141.85 REMARK 500 LYS B 61 -4.22 64.21 REMARK 500 ALA B 62 -39.25 -130.10 REMARK 500 ARG B 141 3.27 -63.48 REMARK 500 GLU B 148 -3.06 62.31 REMARK 500 PHE B 154 31.42 -95.99 REMARK 500 ASP B 180 53.37 -91.50 REMARK 500 GLU B 204 -14.52 -142.20 REMARK 500 HIS B 303 96.52 -69.27 REMARK 500 ASP B 305 41.35 37.18 REMARK 500 PRO B 326 -29.85 11.59 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6KS5 A 1 352 UNP A0A2S6F7D4_LEGPN DBREF2 6KS5 A A0A2S6F7D4 1 352 DBREF1 6KS5 B 1 352 UNP A0A2S6F7D4_LEGPN DBREF2 6KS5 B A0A2S6F7D4 1 352 SEQRES 1 A 352 MET HIS THR LYS LYS ASP LYS LYS VAL ILE SER LEU GLN SEQRES 2 A 352 GLU ARG VAL GLU ASN ALA VAL ASP VAL SER GLY ALA PHE SEQRES 3 A 352 ASP ASN CYS PHE PHE HIS ASN PHE ALA LEU TYR LEU LEU SEQRES 4 A 352 THR ASN ASN LEU PRO LEU PRO ASP ASP LEU PHE HIS PHE SEQRES 5 A 352 LYS SER ILE ILE ASN ARG ASN SER LYS ALA GLU GLN LEU SEQRES 6 A 352 PHE GLU PHE PHE HIS ASN PRO GLU SER LEU ASN LEU PHE SEQRES 7 A 352 SER ILE LEU ASP LYS GLU ASN ASP VAL SER GLU PRO SER SEQRES 8 A 352 GLY TYR LEU PHE GLU LYS SER LEU ILE LEU GLY PHE LEU SEQRES 9 A 352 LEU ARG GLU TRP PHE PRO THR GLN LEU VAL ASN ASN SER SEQRES 10 A 352 ALA VAL LYS ALA GLU MET LEU GLU GLY GLU LYS GLY VAL SEQRES 11 A 352 PHE SER ALA PHE LYS ASN TYR LYS GLU TYR ARG SER PHE SEQRES 12 A 352 MET SER LYS GLU GLU LEU LYS SER THR GLU PHE GLY ALA SEQRES 13 A 352 LEU TYR GLU ALA ASN GLU ALA PHE LEU GLU TYR PHE TYR SEQRES 14 A 352 ASN ARG SER GLU SER THR LEU ILE ASN LYS ASP SER PRO SEQRES 15 A 352 PHE GLU LYS TYR PHE VAL GLY SER SER SER ASP GLU GLU SEQRES 16 A 352 ALA ILE LYS ASN TYR TRP ASP ALA GLU GLY TYR THR LEU SEQRES 17 A 352 TYR CYS GLN HIS LEU ALA LYS PRO GLN VAL LYS LEU SER SEQRES 18 A 352 TYR ILE GLU ILE MET THR MET MET LYS VAL ILE ASN GLN SEQRES 19 A 352 PRO LEU THR ILE TYR ASP ARG SER THR SER SER ILE VAL SEQRES 20 A 352 ALA GLU TYR VAL ASN PRO LYS VAL ASN LEU PRO ASP PHE SEQRES 21 A 352 GLU VAL ALA ILE ASP ALA LEU GLN GLY HIS TYR PHE LEU SEQRES 22 A 352 LEU LYS THR GLU GLU THR GLU LYS GLU LEU GLU GLU TYR SEQRES 23 A 352 GLU ARG SER TYR ALA GLN TYR LYS ARG ASP ARG SER GLU SEQRES 24 A 352 ILE LEU ALA HIS SER ASP LYS PRO VAL SER SER LEU LEU SEQRES 25 A 352 VAL ARG ALA THR CYS PRO LYS GLY HIS LEU ASP GLU ASP SEQRES 26 A 352 PRO PHE ILE ALA LEU ILE GLU SER LEU SER GLU ILE ASN SEQRES 27 A 352 SER LEU SER GLN ILE ASP THR ASN LEU LYS ASN GLU ASN SEQRES 28 A 352 THR SEQRES 1 B 352 MET HIS THR LYS LYS ASP LYS LYS VAL ILE SER LEU GLN SEQRES 2 B 352 GLU ARG VAL GLU ASN ALA VAL ASP VAL SER GLY ALA PHE SEQRES 3 B 352 ASP ASN CYS PHE PHE HIS ASN PHE ALA LEU TYR LEU LEU SEQRES 4 B 352 THR ASN ASN LEU PRO LEU PRO ASP ASP LEU PHE HIS PHE SEQRES 5 B 352 LYS SER ILE ILE ASN ARG ASN SER LYS ALA GLU GLN LEU SEQRES 6 B 352 PHE GLU PHE PHE HIS ASN PRO GLU SER LEU ASN LEU PHE SEQRES 7 B 352 SER ILE LEU ASP LYS GLU ASN ASP VAL SER GLU PRO SER SEQRES 8 B 352 GLY TYR LEU PHE GLU LYS SER LEU ILE LEU GLY PHE LEU SEQRES 9 B 352 LEU ARG GLU TRP PHE PRO THR GLN LEU VAL ASN ASN SER SEQRES 10 B 352 ALA VAL LYS ALA GLU MET LEU GLU GLY GLU LYS GLY VAL SEQRES 11 B 352 PHE SER ALA PHE LYS ASN TYR LYS GLU TYR ARG SER PHE SEQRES 12 B 352 MET SER LYS GLU GLU LEU LYS SER THR GLU PHE GLY ALA SEQRES 13 B 352 LEU TYR GLU ALA ASN GLU ALA PHE LEU GLU TYR PHE TYR SEQRES 14 B 352 ASN ARG SER GLU SER THR LEU ILE ASN LYS ASP SER PRO SEQRES 15 B 352 PHE GLU LYS TYR PHE VAL GLY SER SER SER ASP GLU GLU SEQRES 16 B 352 ALA ILE LYS ASN TYR TRP ASP ALA GLU GLY TYR THR LEU SEQRES 17 B 352 TYR CYS GLN HIS LEU ALA LYS PRO GLN VAL LYS LEU SER SEQRES 18 B 352 TYR ILE GLU ILE MET THR MET MET LYS VAL ILE ASN GLN SEQRES 19 B 352 PRO LEU THR ILE TYR ASP ARG SER THR SER SER ILE VAL SEQRES 20 B 352 ALA GLU TYR VAL ASN PRO LYS VAL ASN LEU PRO ASP PHE SEQRES 21 B 352 GLU VAL ALA ILE ASP ALA LEU GLN GLY HIS TYR PHE LEU SEQRES 22 B 352 LEU LYS THR GLU GLU THR GLU LYS GLU LEU GLU GLU TYR SEQRES 23 B 352 GLU ARG SER TYR ALA GLN TYR LYS ARG ASP ARG SER GLU SEQRES 24 B 352 ILE LEU ALA HIS SER ASP LYS PRO VAL SER SER LEU LEU SEQRES 25 B 352 VAL ARG ALA THR CYS PRO LYS GLY HIS LEU ASP GLU ASP SEQRES 26 B 352 PRO PHE ILE ALA LEU ILE GLU SER LEU SER GLU ILE ASN SEQRES 27 B 352 SER LEU SER GLN ILE ASP THR ASN LEU LYS ASN GLU ASN SEQRES 28 B 352 THR HELIX 1 AA1 GLY A 24 ASP A 27 5 4 HELIX 2 AA2 ASN A 28 ASN A 41 1 14 HELIX 3 AA3 SER A 60 PHE A 66 1 7 HELIX 4 AA4 LEU A 94 LEU A 113 1 20 HELIX 5 AA5 ASN A 116 MET A 123 1 8 HELIX 6 AA6 GLY A 129 ARG A 141 1 13 HELIX 7 AA7 SER A 145 SER A 151 1 7 HELIX 8 AA8 PHE A 154 ASN A 161 1 8 HELIX 9 AA9 ASN A 161 SER A 174 1 14 HELIX 10 AB1 PHE A 183 PHE A 187 5 5 HELIX 11 AB2 SER A 192 GLU A 204 1 13 HELIX 12 AB3 GLU A 204 LYS A 215 1 12 HELIX 13 AB4 SER A 221 ILE A 232 1 12 HELIX 14 AB5 THR A 279 ARG A 297 1 19 HELIX 15 AB6 VAL A 313 CYS A 317 5 5 HELIX 16 AB7 ASP A 325 SER A 335 1 11 HELIX 17 AB8 GLY B 24 ASP B 27 5 4 HELIX 18 AB9 ASN B 28 THR B 40 1 13 HELIX 19 AC1 GLN B 64 PHE B 68 5 5 HELIX 20 AC2 ASN B 71 LEU B 75 5 5 HELIX 21 AC3 TYR B 93 GLN B 112 1 20 HELIX 22 AC4 ASN B 116 MET B 123 1 8 HELIX 23 AC5 GLY B 129 ARG B 141 1 13 HELIX 24 AC6 PHE B 154 ASN B 161 1 8 HELIX 25 AC7 ASN B 161 SER B 174 1 14 HELIX 26 AC8 PHE B 183 PHE B 187 5 5 HELIX 27 AC9 SER B 192 ASP B 202 1 11 HELIX 28 AD1 GLU B 204 ALA B 214 1 11 HELIX 29 AD2 SER B 221 ILE B 232 1 12 HELIX 30 AD3 THR B 276 LEU B 301 1 26 HELIX 31 AD4 LEU B 312 CYS B 317 1 6 HELIX 32 AD5 PRO B 326 LEU B 334 1 9 SHEET 1 AA1 5 VAL A 20 ASP A 21 0 SHEET 2 AA1 5 PHE A 272 LEU A 273 -1 O LEU A 273 N VAL A 20 SHEET 3 AA1 5 GLU A 261 ILE A 264 -1 N ALA A 263 O PHE A 272 SHEET 4 AA1 5 LEU A 236 ASP A 240 1 N THR A 237 O VAL A 262 SHEET 5 AA1 5 ILE A 246 TYR A 250 -1 O TYR A 250 N LEU A 236 SHEET 1 AA2 5 VAL B 20 ASP B 21 0 SHEET 2 AA2 5 TYR B 271 LEU B 273 -1 O LEU B 273 N VAL B 20 SHEET 3 AA2 5 GLU B 261 ILE B 264 -1 N ALA B 263 O PHE B 272 SHEET 4 AA2 5 LEU B 236 ASP B 240 1 N THR B 237 O VAL B 262 SHEET 5 AA2 5 ILE B 246 TYR B 250 -1 O ALA B 248 N ILE B 238 CRYST1 67.350 71.610 142.870 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006999 0.00000