HEADER HYDROLASE 26-AUG-19 6KSU TITLE CRYSTAL STRUCTURE OF SURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SURE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ALBIDOFLAVUS; SOURCE 3 ORGANISM_TAXID: 1886; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NRPS, CYCLASE, PBP-BINDING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHAI,T.MORI,I.ABE REVDAT 3 03-APR-24 6KSU 1 REMARK REVDAT 2 27-MAR-24 6KSU 1 REMARK REVDAT 1 24-JUN-20 6KSU 0 JRNL AUTH K.MATSUDA,R.ZHAI,T.MORI,M.KOBAYASHI,A.SANO,I.ABE,T.WAKIMOTO JRNL TITL HETEROCHIRAL COUPLING IN NON-RIBOSOMAL PEPTIDE JRNL TITL 2 MACROLACTAMIZATION JRNL REF NAT CATAL 2020 JRNL REFN ESSN 2520-1158 JRNL DOI 10.1038/S41929-020-0456-7 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 44606 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 2009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5250 - 5.2999 0.96 3006 136 0.1971 0.2315 REMARK 3 2 5.2999 - 4.2076 0.98 3022 150 0.1683 0.1858 REMARK 3 3 4.2076 - 3.6760 0.98 3027 142 0.1832 0.2168 REMARK 3 4 3.6760 - 3.3400 0.99 3022 143 0.1955 0.2452 REMARK 3 5 3.3400 - 3.1006 0.99 3029 147 0.2117 0.2803 REMARK 3 6 3.1006 - 2.9179 0.99 3064 143 0.2244 0.2965 REMARK 3 7 2.9179 - 2.7717 0.99 3030 142 0.2359 0.2910 REMARK 3 8 2.7717 - 2.6511 0.99 3045 140 0.2323 0.2868 REMARK 3 9 2.6511 - 2.5491 1.00 3066 149 0.2395 0.3359 REMARK 3 10 2.5491 - 2.4611 1.00 3058 147 0.2412 0.2985 REMARK 3 11 2.4611 - 2.3841 1.00 3040 139 0.2511 0.2931 REMARK 3 12 2.3841 - 2.3160 1.00 3079 139 0.2659 0.2944 REMARK 3 13 2.3160 - 2.2550 1.00 3026 153 0.2625 0.3359 REMARK 3 14 2.2550 - 2.2000 1.00 3083 139 0.2766 0.3357 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KSU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300013596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44668 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SELENOMETHIONINE-LABELED SURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, YTTERIUM, TCEP, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 75.18500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 94 REMARK 465 LEU A 95 REMARK 465 GLY A 96 REMARK 465 ARG A 97 REMARK 465 ALA A 98 REMARK 465 ALA A 99 REMARK 465 GLY A 100 REMARK 465 PRO A 101 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 LEU B 92 REMARK 465 PRO B 93 REMARK 465 ASP B 94 REMARK 465 LEU B 95 REMARK 465 GLY B 96 REMARK 465 ARG B 97 REMARK 465 ALA B 98 REMARK 465 ALA B 99 REMARK 465 GLY B 100 REMARK 465 PRO B 101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 722 O HOH B 724 2.05 REMARK 500 O HOH A 741 O HOH B 731 2.15 REMARK 500 O HOH B 619 O HOH B 752 2.15 REMARK 500 NH2 ARG A 33 O HOH A 601 2.16 REMARK 500 OH TYR A 403 O HOH A 602 2.16 REMARK 500 O HOH A 613 O HOH A 728 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 50 C - N - CA ANGL. DEV. = -12.6 DEGREES REMARK 500 MET B 226 CG - SD - CE ANGL. DEV. = 11.5 DEGREES REMARK 500 LEU B 441 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 124 52.06 -141.89 REMARK 500 ASP A 125 0.02 -66.76 REMARK 500 ARG A 141 39.81 -80.89 REMARK 500 SER A 170 -174.10 -67.86 REMARK 500 LEU A 182 -54.69 -139.21 REMARK 500 GLN A 200 -163.66 -125.21 REMARK 500 HIS A 222 135.18 -39.79 REMARK 500 ALA A 279 76.24 -150.08 REMARK 500 LEU A 284 -47.87 -131.37 REMARK 500 THR B 49 -177.26 -69.13 REMARK 500 TYR B 124 71.22 -153.84 REMARK 500 ALA B 169 -70.44 -58.87 REMARK 500 LEU B 182 -55.52 -130.69 REMARK 500 LEU B 284 -41.63 -131.50 REMARK 500 THR B 297 -70.33 -122.08 REMARK 500 GLU B 348 11.98 -67.86 REMARK 500 ALA B 349 35.66 -151.67 REMARK 500 SER B 363 -158.06 -124.71 REMARK 500 PRO B 368 70.29 -69.49 REMARK 500 SER B 399 16.14 59.75 REMARK 500 ASP B 411 18.22 59.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 764 DISTANCE = 6.63 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 B 502 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 123 OE2 REMARK 620 2 GLU B 126 OE1 54.6 REMARK 620 3 GLU B 126 OE2 73.5 43.6 REMARK 620 4 ASP B 299 OD1 43.6 77.7 113.5 REMARK 620 5 ASP B 299 OD2 44.3 77.2 113.6 1.3 REMARK 620 6 HOH B 736 O 148.2 144.8 138.2 107.1 106.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YT3 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 504 DBREF1 6KSU A 1 451 UNP A0A4Q6RSJ1_9ACTN DBREF2 6KSU A A0A4Q6RSJ1 1 451 DBREF1 6KSU B 1 451 UNP A0A4Q6RSJ1_9ACTN DBREF2 6KSU B A0A4Q6RSJ1 1 451 SEQADV 6KSU MET A -19 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU GLY A -18 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER A -17 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER A -16 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS A -15 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS A -14 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS A -13 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS A -12 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS A -11 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS A -10 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER A -9 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER A -8 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU GLY A -7 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU LEU A -6 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU VAL A -5 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU PRO A -4 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU ARG A -3 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU GLY A -2 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER A -1 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS A 0 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU MET B -19 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU GLY B -18 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER B -17 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER B -16 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS B -15 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS B -14 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS B -13 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS B -12 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS B -11 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS B -10 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER B -9 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER B -8 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU GLY B -7 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU LEU B -6 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU VAL B -5 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU PRO B -4 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU ARG B -3 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU GLY B -2 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU SER B -1 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSU HIS B 0 UNP A0A4Q6RSJ EXPRESSION TAG SEQRES 1 A 471 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 471 LEU VAL PRO ARG GLY SER HIS MET GLY ALA GLU GLY ALA SEQRES 3 A 471 GLU ARG ASP ALA VAL GLY ALA LEU PHE GLU GLU LEU VAL SEQRES 4 A 471 ARG GLU HIS ARG VAL THR GLY ALA GLN LEU SER VAL TYR SEQRES 5 A 471 ARG ASP GLY ALA LEU SER GLU TYR ALA THR GLY LEU ALA SEQRES 6 A 471 SER VAL ARG THR GLY GLU PRO VAL THR PRO ARG THR GLY SEQRES 7 A 471 PHE PRO PHE GLY SER VAL THR LYS PHE LEU THR ALA GLU SEQRES 8 A 471 LEU VAL MET GLN PHE VAL CYS ASP GLY ASP LEU ASP LEU SEQRES 9 A 471 ASP ASP PRO LEU ALA GLY LEU LEU PRO ASP LEU GLY ARG SEQRES 10 A 471 ALA ALA GLY PRO PRO LEU GLY THR ALA THR VAL ARG GLN SEQRES 11 A 471 LEU LEU SER HIS THR ALA GLY VAL VAL ASP SER ILE GLU SEQRES 12 A 471 TYR ASP GLU MET ARG GLY PRO SER TYR ARG ARG PHE ALA SEQRES 13 A 471 ALA ALA CYS ALA ARG GLN PRO ALA LEU PHE PRO PRO GLY SEQRES 14 A 471 LEU ALA PHE SER TYR SER ASN THR GLY TYR CYS LEU LEU SEQRES 15 A 471 GLY ALA VAL ILE GLU ALA ALA SER GLY MET ASP TRP TRP SEQRES 16 A 471 THR ALA MET ASP SER CYS LEU LEU ARG PRO LEU GLY ILE SEQRES 17 A 471 GLU PRO ALA PHE LEU HIS ASP PRO ARG PRO GLY GLN GLY SEQRES 18 A 471 GLY ALA ALA ARG PRO VAL ALA GLU GLY HIS ALA LEU ARG SEQRES 19 A 471 ALA GLY GLY GLU ARG ALA GLU HIS VAL ASP HIS MET ALA SEQRES 20 A 471 SER LEU SER LEU ALA ALA ALA GLY GLY LEU VAL GLY SER SEQRES 21 A 471 ALA THR ASP LEU VAL THR ALA ALA ARG PRO HIS LEU ALA SEQRES 22 A 471 ASP ARG LYS THR PHE ALA GLN HIS ASP LEU LEU PRO GLU SEQRES 23 A 471 ASP ALA VAL LEU ALA MET ARG THR CYS VAL PRO ASP ALA SEQRES 24 A 471 GLU PRO PHE GLY LEU ALA ASP GLY TRP GLY LEU GLY LEU SEQRES 25 A 471 MET ARG HIS GLY THR GLY ASP GLY ALA TRP TYR GLY HIS SEQRES 26 A 471 ASP GLY ALA VAL GLY GLY ALA SER CYS ASN LEU ARG ILE SEQRES 27 A 471 HIS PRO ASP ARG SER LEU ALA LEU ALA LEU THR ALA ASN SEQRES 28 A 471 SER THR ALA GLY PRO LYS LEU TRP GLU ALA LEU VAL ALA SEQRES 29 A 471 ARG LEU PRO GLU ALA GLY LEU ASP VAL GLY HIS TYR ALA SEQRES 30 A 471 LEU PRO VAL PRO ASP SER ALA PRO LEU ALA PRO ASP ALA SEQRES 31 A 471 GLY HIS LEU GLY THR TYR ALA ASN GLY ASP LEU GLU LEU SEQRES 32 A 471 MET VAL THR HIS ASP ALA ALA GLY ASP LEU PHE LEU THR SEQRES 33 A 471 ARG GLU SER TYR SER ASP TYR ARG LEU SER LEU HIS GLU SEQRES 34 A 471 ASP ASP LEU PHE VAL ALA ARG SER GLY GLU PRO GLY ALA SEQRES 35 A 471 LEU PRO ILE THR GLY ARG PHE VAL ARG GLU HIS PRO ALA SEQRES 36 A 471 GLY PRO VAL ALA LEU LEU GLN TYR GLY GLY ARG ALA MET SEQRES 37 A 471 HIS ARG LEU SEQRES 1 B 471 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 471 LEU VAL PRO ARG GLY SER HIS MET GLY ALA GLU GLY ALA SEQRES 3 B 471 GLU ARG ASP ALA VAL GLY ALA LEU PHE GLU GLU LEU VAL SEQRES 4 B 471 ARG GLU HIS ARG VAL THR GLY ALA GLN LEU SER VAL TYR SEQRES 5 B 471 ARG ASP GLY ALA LEU SER GLU TYR ALA THR GLY LEU ALA SEQRES 6 B 471 SER VAL ARG THR GLY GLU PRO VAL THR PRO ARG THR GLY SEQRES 7 B 471 PHE PRO PHE GLY SER VAL THR LYS PHE LEU THR ALA GLU SEQRES 8 B 471 LEU VAL MET GLN PHE VAL CYS ASP GLY ASP LEU ASP LEU SEQRES 9 B 471 ASP ASP PRO LEU ALA GLY LEU LEU PRO ASP LEU GLY ARG SEQRES 10 B 471 ALA ALA GLY PRO PRO LEU GLY THR ALA THR VAL ARG GLN SEQRES 11 B 471 LEU LEU SER HIS THR ALA GLY VAL VAL ASP SER ILE GLU SEQRES 12 B 471 TYR ASP GLU MET ARG GLY PRO SER TYR ARG ARG PHE ALA SEQRES 13 B 471 ALA ALA CYS ALA ARG GLN PRO ALA LEU PHE PRO PRO GLY SEQRES 14 B 471 LEU ALA PHE SER TYR SER ASN THR GLY TYR CYS LEU LEU SEQRES 15 B 471 GLY ALA VAL ILE GLU ALA ALA SER GLY MET ASP TRP TRP SEQRES 16 B 471 THR ALA MET ASP SER CYS LEU LEU ARG PRO LEU GLY ILE SEQRES 17 B 471 GLU PRO ALA PHE LEU HIS ASP PRO ARG PRO GLY GLN GLY SEQRES 18 B 471 GLY ALA ALA ARG PRO VAL ALA GLU GLY HIS ALA LEU ARG SEQRES 19 B 471 ALA GLY GLY GLU ARG ALA GLU HIS VAL ASP HIS MET ALA SEQRES 20 B 471 SER LEU SER LEU ALA ALA ALA GLY GLY LEU VAL GLY SER SEQRES 21 B 471 ALA THR ASP LEU VAL THR ALA ALA ARG PRO HIS LEU ALA SEQRES 22 B 471 ASP ARG LYS THR PHE ALA GLN HIS ASP LEU LEU PRO GLU SEQRES 23 B 471 ASP ALA VAL LEU ALA MET ARG THR CYS VAL PRO ASP ALA SEQRES 24 B 471 GLU PRO PHE GLY LEU ALA ASP GLY TRP GLY LEU GLY LEU SEQRES 25 B 471 MET ARG HIS GLY THR GLY ASP GLY ALA TRP TYR GLY HIS SEQRES 26 B 471 ASP GLY ALA VAL GLY GLY ALA SER CYS ASN LEU ARG ILE SEQRES 27 B 471 HIS PRO ASP ARG SER LEU ALA LEU ALA LEU THR ALA ASN SEQRES 28 B 471 SER THR ALA GLY PRO LYS LEU TRP GLU ALA LEU VAL ALA SEQRES 29 B 471 ARG LEU PRO GLU ALA GLY LEU ASP VAL GLY HIS TYR ALA SEQRES 30 B 471 LEU PRO VAL PRO ASP SER ALA PRO LEU ALA PRO ASP ALA SEQRES 31 B 471 GLY HIS LEU GLY THR TYR ALA ASN GLY ASP LEU GLU LEU SEQRES 32 B 471 MET VAL THR HIS ASP ALA ALA GLY ASP LEU PHE LEU THR SEQRES 33 B 471 ARG GLU SER TYR SER ASP TYR ARG LEU SER LEU HIS GLU SEQRES 34 B 471 ASP ASP LEU PHE VAL ALA ARG SER GLY GLU PRO GLY ALA SEQRES 35 B 471 LEU PRO ILE THR GLY ARG PHE VAL ARG GLU HIS PRO ALA SEQRES 36 B 471 GLY PRO VAL ALA LEU LEU GLN TYR GLY GLY ARG ALA MET SEQRES 37 B 471 HIS ARG LEU HET SO4 A 501 5 HET MLI A 502 7 HET SO4 B 501 5 HET YT3 B 502 1 HET SO4 B 503 5 HET SO4 B 504 5 HETNAM SO4 SULFATE ION HETNAM MLI MALONATE ION HETNAM YT3 YTTRIUM (III) ION FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 MLI C3 H2 O4 2- FORMUL 6 YT3 Y 3+ FORMUL 9 HOH *319(H2 O) HELIX 1 AA1 GLY A 2 HIS A 22 1 21 HELIX 2 AA2 VAL A 64 ASP A 79 1 16 HELIX 3 AA3 PRO A 87 LEU A 92 1 6 HELIX 4 AA4 PRO A 102 ALA A 106 5 5 HELIX 5 AA5 THR A 107 SER A 113 1 7 HELIX 6 AA6 TYR A 132 ARG A 141 1 10 HELIX 7 AA7 SER A 155 SER A 170 1 16 HELIX 8 AA8 ASP A 173 LEU A 182 1 10 HELIX 9 AA9 LEU A 182 GLY A 187 1 6 HELIX 10 AB1 SER A 228 SER A 230 5 3 HELIX 11 AB2 LEU A 231 GLY A 236 1 6 HELIX 12 AB3 SER A 240 ARG A 249 1 10 HELIX 13 AB4 PRO A 250 LEU A 252 5 3 HELIX 14 AB5 ASP A 254 PHE A 258 5 5 HELIX 15 AB6 GLN A 260 LEU A 264 5 5 HELIX 16 AB7 PRO A 265 THR A 274 1 10 HELIX 17 AB8 ALA A 334 LEU A 346 1 13 HELIX 18 AB9 PRO A 347 GLY A 350 5 4 HELIX 19 AC1 GLU B 4 HIS B 22 1 19 HELIX 20 AC2 VAL B 64 ASP B 79 1 16 HELIX 21 AC3 PRO B 87 LEU B 91 5 5 HELIX 22 AC4 PRO B 102 ALA B 106 5 5 HELIX 23 AC5 THR B 107 SER B 113 1 7 HELIX 24 AC6 TYR B 132 ARG B 141 1 10 HELIX 25 AC7 SER B 155 SER B 170 1 16 HELIX 26 AC8 ASP B 173 LEU B 182 1 10 HELIX 27 AC9 LEU B 182 GLY B 187 1 6 HELIX 28 AD1 SER B 228 SER B 230 5 3 HELIX 29 AD2 LEU B 231 GLY B 236 1 6 HELIX 30 AD3 SER B 240 ARG B 249 1 10 HELIX 31 AD4 PRO B 250 LEU B 252 5 3 HELIX 32 AD5 ASP B 254 PHE B 258 5 5 HELIX 33 AD6 GLN B 260 LEU B 264 5 5 HELIX 34 AD7 PRO B 265 THR B 274 1 10 HELIX 35 AD8 ALA B 334 LEU B 346 1 13 HELIX 36 AD9 PRO B 347 GLY B 350 5 4 HELIX 37 AE1 ASP B 369 LEU B 373 5 5 SHEET 1 AA1 7 ALA A 36 GLY A 43 0 SHEET 2 AA1 7 GLY A 26 ARG A 33 -1 N LEU A 29 O TYR A 40 SHEET 3 AA1 7 LEU A 324 ALA A 330 -1 O ALA A 325 N TYR A 32 SHEET 4 AA1 7 ALA A 312 HIS A 319 -1 N HIS A 319 O LEU A 324 SHEET 5 AA1 7 TRP A 302 VAL A 309 -1 N TYR A 303 O ILE A 318 SHEET 6 AA1 7 MET A 293 HIS A 295 -1 N HIS A 295 O TRP A 302 SHEET 7 AA1 7 GLY A 287 TRP A 288 -1 N GLY A 287 O ARG A 294 SHEET 1 AA2 2 PHE A 59 PRO A 60 0 SHEET 2 AA2 2 VAL A 238 GLY A 239 -1 O GLY A 239 N PHE A 59 SHEET 1 AA3 2 HIS A 211 ALA A 212 0 SHEET 2 AA3 2 GLU A 221 HIS A 222 -1 O GLU A 221 N ALA A 212 SHEET 1 AA4 9 GLY A 374 ASN A 378 0 SHEET 2 AA4 9 LEU A 381 HIS A 387 -1 O LEU A 383 N TYR A 376 SHEET 3 AA4 9 LEU A 393 ARG A 397 -1 O THR A 396 N MET A 384 SHEET 4 AA4 9 TYR A 400 LEU A 407 -1 O TYR A 403 N LEU A 395 SHEET 5 AA4 9 LEU A 412 SER A 417 -1 O ARG A 416 N ARG A 404 SHEET 6 AA4 9 ILE A 425 ARG A 431 -1 O ILE A 425 N ALA A 415 SHEET 7 AA4 9 VAL A 438 TYR A 443 -1 O GLN A 442 N ARG A 428 SHEET 8 AA4 9 ARG A 446 ARG A 450 -1 O ARG A 446 N TYR A 443 SHEET 9 AA4 9 GLY A 374 ASN A 378 -1 N ALA A 377 O HIS A 449 SHEET 1 AA5 7 ALA B 36 GLY B 43 0 SHEET 2 AA5 7 GLY B 26 ARG B 33 -1 N LEU B 29 O TYR B 40 SHEET 3 AA5 7 LEU B 324 ALA B 330 -1 O ALA B 325 N TYR B 32 SHEET 4 AA5 7 ALA B 312 HIS B 319 -1 N HIS B 319 O LEU B 324 SHEET 5 AA5 7 TRP B 302 VAL B 309 -1 N TYR B 303 O ILE B 318 SHEET 6 AA5 7 MET B 293 HIS B 295 -1 N HIS B 295 O TRP B 302 SHEET 7 AA5 7 GLY B 287 TRP B 288 -1 N GLY B 287 O ARG B 294 SHEET 1 AA6 2 PHE B 59 PRO B 60 0 SHEET 2 AA6 2 VAL B 238 GLY B 239 -1 O GLY B 239 N PHE B 59 SHEET 1 AA7 2 GLY B 210 ALA B 212 0 SHEET 2 AA7 2 GLU B 221 VAL B 223 -1 O GLU B 221 N ALA B 212 SHEET 1 AA8 9 GLY B 374 ASN B 378 0 SHEET 2 AA8 9 LEU B 381 HIS B 387 -1 O LEU B 383 N TYR B 376 SHEET 3 AA8 9 LEU B 393 THR B 396 -1 O PHE B 394 N THR B 386 SHEET 4 AA8 9 TYR B 403 LEU B 407 -1 O TYR B 403 N LEU B 395 SHEET 5 AA8 9 LEU B 412 SER B 417 -1 O ARG B 416 N ARG B 404 SHEET 6 AA8 9 ILE B 425 ARG B 431 -1 O ILE B 425 N ALA B 415 SHEET 7 AA8 9 VAL B 438 TYR B 443 -1 O GLN B 442 N ARG B 428 SHEET 8 AA8 9 ARG B 446 ARG B 450 -1 O MET B 448 N LEU B 441 SHEET 9 AA8 9 GLY B 374 ASN B 378 -1 N ALA B 377 O HIS B 449 LINK OE2 GLU B 123 Y YT3 B 502 1555 1555 2.54 LINK OE1 GLU B 126 Y YT3 B 502 1555 1555 3.11 LINK OE2 GLU B 126 Y YT3 B 502 1555 1555 2.75 LINK OD1 ASP B 299 Y YT3 B 502 1555 1655 2.45 LINK OD2 ASP B 299 Y YT3 B 502 1555 1655 2.68 LINK Y YT3 B 502 O HOH B 736 1555 1455 2.40 SITE 1 AC1 2 ARG A 48 GLU A 221 SITE 1 AC2 3 ARG A 33 ASP A 34 ARG A 322 SITE 1 AC3 5 ARG B 33 ASP B 34 ARG B 322 LEU B 324 SITE 2 AC3 5 HOH B 603 SITE 1 AC4 4 GLU B 123 GLU B 126 ASP B 299 HOH B 736 SITE 1 AC5 2 ARG A 20 ARG B 416 SITE 1 AC6 3 ARG B 48 ARG B 214 HOH B 696 CRYST1 49.738 150.370 64.771 90.00 110.71 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020105 0.000000 0.007600 0.00000 SCALE2 0.000000 0.006650 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016505 0.00000