HEADER HYDROLASE 26-AUG-19 6KSV TITLE CRYSTAL STRUCTURE OF SURE WITH D-LEU COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SURE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES ALBIDOFLAVUS; SOURCE 3 ORGANISM_TAXID: 1886; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NRPS, CYCLASE, PBP-BINDING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHAI,T.MORI,I.ABE REVDAT 2 22-NOV-23 6KSV 1 LINK REVDAT 1 24-JUN-20 6KSV 0 JRNL AUTH K.MATSUDA,R.ZHAI,T.MORI,M.KOBAYASHI,A.SANO,I.ABE,T.WAKIMOTO JRNL TITL HETEROCHIRAL COUPLING IN NON-RIBOSOMAL PEPTIDE JRNL TITL 2 MACROLACTAMIZATION JRNL REF NAT CATAL 2020 JRNL REFN ESSN 2520-1158 JRNL DOI 10.1038/S41929-020-0456-7 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 32449 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1622 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0860 - 5.5366 1.00 2625 139 0.1922 0.2645 REMARK 3 2 5.5366 - 4.3958 1.00 2584 136 0.1763 0.2458 REMARK 3 3 4.3958 - 3.8405 1.00 2588 136 0.1690 0.2474 REMARK 3 4 3.8405 - 3.4895 0.99 2576 135 0.1790 0.2725 REMARK 3 5 3.4895 - 3.2394 1.00 2539 133 0.1985 0.2762 REMARK 3 6 3.2394 - 3.0485 1.00 2583 136 0.2230 0.2683 REMARK 3 7 3.0485 - 2.8959 1.00 2577 136 0.2217 0.3490 REMARK 3 8 2.8959 - 2.7698 1.00 2585 136 0.2299 0.3187 REMARK 3 9 2.7698 - 2.6632 1.00 2563 135 0.2351 0.3168 REMARK 3 10 2.6632 - 2.5713 1.00 2564 135 0.2578 0.3248 REMARK 3 11 2.5713 - 2.4909 0.99 2576 136 0.2653 0.3430 REMARK 3 12 2.4909 - 2.4200 0.96 2467 129 0.2813 0.3572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-19. REMARK 100 THE DEPOSITION ID IS D_1300013595. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 277 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.50700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6KSU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, YTTRIUM CHLORIDE, REMARK 280 TCEP, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 76.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 94 REMARK 465 LEU A 95 REMARK 465 GLY A 96 REMARK 465 ARG A 97 REMARK 465 ALA A 98 REMARK 465 ALA A 99 REMARK 465 GLY A 100 REMARK 465 PRO A 101 REMARK 465 ALA A 212 REMARK 465 LEU A 213 REMARK 465 ARG A 214 REMARK 465 ALA A 215 REMARK 465 GLY A 216 REMARK 465 GLY A 217 REMARK 465 GLU A 218 REMARK 465 ARG A 219 REMARK 465 ALA A 220 REMARK 465 GLU A 221 REMARK 465 HIS A 222 REMARK 465 VAL A 223 REMARK 465 ASP A 224 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 92 REMARK 465 PRO B 93 REMARK 465 ASP B 94 REMARK 465 LEU B 95 REMARK 465 GLY B 96 REMARK 465 ARG B 97 REMARK 465 ALA B 98 REMARK 465 ALA B 99 REMARK 465 GLY B 100 REMARK 465 PRO B 101 REMARK 465 ARG B 214 REMARK 465 ALA B 215 REMARK 465 GLY B 216 REMARK 465 GLY B 217 REMARK 465 GLU B 218 REMARK 465 ARG B 219 REMARK 465 ALA B 220 REMARK 465 GLU B 221 REMARK 465 HIS B 222 REMARK 465 VAL B 223 REMARK 465 ASP B 224 REMARK 465 HIS B 225 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ASP A 83 O HOH A 701 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 124 76.00 -152.78 REMARK 500 ARG A 141 9.89 -65.70 REMARK 500 SER A 170 -163.56 -71.39 REMARK 500 LEU A 182 -44.55 -137.96 REMARK 500 GLN A 200 -158.16 -123.47 REMARK 500 SER A 228 124.05 -179.89 REMARK 500 LEU A 264 88.74 -151.95 REMARK 500 ALA A 279 77.92 -154.64 REMARK 500 THR A 297 -71.38 -113.45 REMARK 500 GLU A 348 4.11 -60.78 REMARK 500 SER A 363 -158.01 -120.18 REMARK 500 PRO A 368 76.50 -46.41 REMARK 500 GLU A 398 116.15 -37.16 REMARK 500 ARG B 23 63.08 39.35 REMARK 500 LEU B 82 134.18 -170.39 REMARK 500 TYR B 124 59.03 -157.20 REMARK 500 ARG B 128 -79.76 -105.96 REMARK 500 LEU B 182 -56.75 -143.59 REMARK 500 ASP B 254 39.10 -83.99 REMARK 500 PRO B 365 101.09 -28.66 REMARK 500 PRO B 368 77.92 -55.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 A 606 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 123 OE1 REMARK 620 2 GLU A 123 OE2 47.8 REMARK 620 3 GLU A 126 OE1 123.9 76.3 REMARK 620 4 GLU A 126 OE2 113.6 78.9 47.7 REMARK 620 5 HOH A 702 O 110.1 77.1 40.1 87.6 REMARK 620 6 HOH A 740 O 99.5 147.2 136.5 120.4 126.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 B 504 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 123 OE1 REMARK 620 2 GLU B 123 OE2 44.2 REMARK 620 3 ASP B 125 OD1 54.3 92.0 REMARK 620 4 GLU B 126 OE1 114.6 90.6 97.0 REMARK 620 5 ASP B 299 OD1 38.7 32.5 65.1 76.9 REMARK 620 6 ASP B 299 OD2 37.5 34.5 62.6 77.6 2.6 REMARK 620 7 ASP B 321 OD2 40.9 36.0 63.3 74.2 3.8 3.5 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DLE A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YT3 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YT3 A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E7L B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YT3 B 504 DBREF1 6KSV A 1 451 UNP A0A4Q6RSJ1_9ACTN DBREF2 6KSV A A0A4Q6RSJ1 1 451 DBREF1 6KSV B 1 451 UNP A0A4Q6RSJ1_9ACTN DBREF2 6KSV B A0A4Q6RSJ1 1 451 SEQADV 6KSV MET A -19 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV GLY A -18 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER A -17 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER A -16 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS A -15 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS A -14 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS A -13 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS A -12 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS A -11 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS A -10 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER A -9 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER A -8 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV GLY A -7 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV LEU A -6 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV VAL A -5 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV PRO A -4 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV ARG A -3 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV GLY A -2 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER A -1 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS A 0 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV MET B -19 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV GLY B -18 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER B -17 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER B -16 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS B -15 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS B -14 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS B -13 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS B -12 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS B -11 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS B -10 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER B -9 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER B -8 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV GLY B -7 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV LEU B -6 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV VAL B -5 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV PRO B -4 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV ARG B -3 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV GLY B -2 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV SER B -1 UNP A0A4Q6RSJ EXPRESSION TAG SEQADV 6KSV HIS B 0 UNP A0A4Q6RSJ EXPRESSION TAG SEQRES 1 A 471 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 471 LEU VAL PRO ARG GLY SER HIS MET GLY ALA GLU GLY ALA SEQRES 3 A 471 GLU ARG ASP ALA VAL GLY ALA LEU PHE GLU GLU LEU VAL SEQRES 4 A 471 ARG GLU HIS ARG VAL THR GLY ALA GLN LEU SER VAL TYR SEQRES 5 A 471 ARG ASP GLY ALA LEU SER GLU TYR ALA THR GLY LEU ALA SEQRES 6 A 471 SER VAL ARG THR GLY GLU PRO VAL THR PRO ARG THR GLY SEQRES 7 A 471 PHE PRO PHE GLY SER VAL THR LYS PHE LEU THR ALA GLU SEQRES 8 A 471 LEU VAL MET GLN PHE VAL CYS ASP GLY ASP LEU ASP LEU SEQRES 9 A 471 ASP ASP PRO LEU ALA GLY LEU LEU PRO ASP LEU GLY ARG SEQRES 10 A 471 ALA ALA GLY PRO PRO LEU GLY THR ALA THR VAL ARG GLN SEQRES 11 A 471 LEU LEU SER HIS THR ALA GLY VAL VAL ASP SER ILE GLU SEQRES 12 A 471 TYR ASP GLU MET ARG GLY PRO SER TYR ARG ARG PHE ALA SEQRES 13 A 471 ALA ALA CYS ALA ARG GLN PRO ALA LEU PHE PRO PRO GLY SEQRES 14 A 471 LEU ALA PHE SER TYR SER ASN THR GLY TYR CYS LEU LEU SEQRES 15 A 471 GLY ALA VAL ILE GLU ALA ALA SER GLY MET ASP TRP TRP SEQRES 16 A 471 THR ALA MET ASP SER CYS LEU LEU ARG PRO LEU GLY ILE SEQRES 17 A 471 GLU PRO ALA PHE LEU HIS ASP PRO ARG PRO GLY GLN GLY SEQRES 18 A 471 GLY ALA ALA ARG PRO VAL ALA GLU GLY HIS ALA LEU ARG SEQRES 19 A 471 ALA GLY GLY GLU ARG ALA GLU HIS VAL ASP HIS MET ALA SEQRES 20 A 471 SER LEU SER LEU ALA ALA ALA GLY GLY LEU VAL GLY SER SEQRES 21 A 471 ALA THR ASP LEU VAL THR ALA ALA ARG PRO HIS LEU ALA SEQRES 22 A 471 ASP ARG LYS THR PHE ALA GLN HIS ASP LEU LEU PRO GLU SEQRES 23 A 471 ASP ALA VAL LEU ALA MET ARG THR CYS VAL PRO ASP ALA SEQRES 24 A 471 GLU PRO PHE GLY LEU ALA ASP GLY TRP GLY LEU GLY LEU SEQRES 25 A 471 MET ARG HIS GLY THR GLY ASP GLY ALA TRP TYR GLY HIS SEQRES 26 A 471 ASP GLY ALA VAL GLY GLY ALA SER CYS ASN LEU ARG ILE SEQRES 27 A 471 HIS PRO ASP ARG SER LEU ALA LEU ALA LEU THR ALA ASN SEQRES 28 A 471 SER THR ALA GLY PRO LYS LEU TRP GLU ALA LEU VAL ALA SEQRES 29 A 471 ARG LEU PRO GLU ALA GLY LEU ASP VAL GLY HIS TYR ALA SEQRES 30 A 471 LEU PRO VAL PRO ASP SER ALA PRO LEU ALA PRO ASP ALA SEQRES 31 A 471 GLY HIS LEU GLY THR TYR ALA ASN GLY ASP LEU GLU LEU SEQRES 32 A 471 MET VAL THR HIS ASP ALA ALA GLY ASP LEU PHE LEU THR SEQRES 33 A 471 ARG GLU SER TYR SER ASP TYR ARG LEU SER LEU HIS GLU SEQRES 34 A 471 ASP ASP LEU PHE VAL ALA ARG SER GLY GLU PRO GLY ALA SEQRES 35 A 471 LEU PRO ILE THR GLY ARG PHE VAL ARG GLU HIS PRO ALA SEQRES 36 A 471 GLY PRO VAL ALA LEU LEU GLN TYR GLY GLY ARG ALA MET SEQRES 37 A 471 HIS ARG LEU SEQRES 1 B 471 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 471 LEU VAL PRO ARG GLY SER HIS MET GLY ALA GLU GLY ALA SEQRES 3 B 471 GLU ARG ASP ALA VAL GLY ALA LEU PHE GLU GLU LEU VAL SEQRES 4 B 471 ARG GLU HIS ARG VAL THR GLY ALA GLN LEU SER VAL TYR SEQRES 5 B 471 ARG ASP GLY ALA LEU SER GLU TYR ALA THR GLY LEU ALA SEQRES 6 B 471 SER VAL ARG THR GLY GLU PRO VAL THR PRO ARG THR GLY SEQRES 7 B 471 PHE PRO PHE GLY SER VAL THR LYS PHE LEU THR ALA GLU SEQRES 8 B 471 LEU VAL MET GLN PHE VAL CYS ASP GLY ASP LEU ASP LEU SEQRES 9 B 471 ASP ASP PRO LEU ALA GLY LEU LEU PRO ASP LEU GLY ARG SEQRES 10 B 471 ALA ALA GLY PRO PRO LEU GLY THR ALA THR VAL ARG GLN SEQRES 11 B 471 LEU LEU SER HIS THR ALA GLY VAL VAL ASP SER ILE GLU SEQRES 12 B 471 TYR ASP GLU MET ARG GLY PRO SER TYR ARG ARG PHE ALA SEQRES 13 B 471 ALA ALA CYS ALA ARG GLN PRO ALA LEU PHE PRO PRO GLY SEQRES 14 B 471 LEU ALA PHE SER TYR SER ASN THR GLY TYR CYS LEU LEU SEQRES 15 B 471 GLY ALA VAL ILE GLU ALA ALA SER GLY MET ASP TRP TRP SEQRES 16 B 471 THR ALA MET ASP SER CYS LEU LEU ARG PRO LEU GLY ILE SEQRES 17 B 471 GLU PRO ALA PHE LEU HIS ASP PRO ARG PRO GLY GLN GLY SEQRES 18 B 471 GLY ALA ALA ARG PRO VAL ALA GLU GLY HIS ALA LEU ARG SEQRES 19 B 471 ALA GLY GLY GLU ARG ALA GLU HIS VAL ASP HIS MET ALA SEQRES 20 B 471 SER LEU SER LEU ALA ALA ALA GLY GLY LEU VAL GLY SER SEQRES 21 B 471 ALA THR ASP LEU VAL THR ALA ALA ARG PRO HIS LEU ALA SEQRES 22 B 471 ASP ARG LYS THR PHE ALA GLN HIS ASP LEU LEU PRO GLU SEQRES 23 B 471 ASP ALA VAL LEU ALA MET ARG THR CYS VAL PRO ASP ALA SEQRES 24 B 471 GLU PRO PHE GLY LEU ALA ASP GLY TRP GLY LEU GLY LEU SEQRES 25 B 471 MET ARG HIS GLY THR GLY ASP GLY ALA TRP TYR GLY HIS SEQRES 26 B 471 ASP GLY ALA VAL GLY GLY ALA SER CYS ASN LEU ARG ILE SEQRES 27 B 471 HIS PRO ASP ARG SER LEU ALA LEU ALA LEU THR ALA ASN SEQRES 28 B 471 SER THR ALA GLY PRO LYS LEU TRP GLU ALA LEU VAL ALA SEQRES 29 B 471 ARG LEU PRO GLU ALA GLY LEU ASP VAL GLY HIS TYR ALA SEQRES 30 B 471 LEU PRO VAL PRO ASP SER ALA PRO LEU ALA PRO ASP ALA SEQRES 31 B 471 GLY HIS LEU GLY THR TYR ALA ASN GLY ASP LEU GLU LEU SEQRES 32 B 471 MET VAL THR HIS ASP ALA ALA GLY ASP LEU PHE LEU THR SEQRES 33 B 471 ARG GLU SER TYR SER ASP TYR ARG LEU SER LEU HIS GLU SEQRES 34 B 471 ASP ASP LEU PHE VAL ALA ARG SER GLY GLU PRO GLY ALA SEQRES 35 B 471 LEU PRO ILE THR GLY ARG PHE VAL ARG GLU HIS PRO ALA SEQRES 36 B 471 GLY PRO VAL ALA LEU LEU GLN TYR GLY GLY ARG ALA MET SEQRES 37 B 471 HIS ARG LEU HET DLE A 601 8 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET YT3 A 605 1 HET YT3 A 606 1 HET E7L B 501 15 HET SO4 B 502 5 HET SO4 B 503 5 HET YT3 B 504 1 HETNAM DLE D-LEUCINE HETNAM SO4 SULFATE ION HETNAM YT3 YTTRIUM (III) ION HETNAM E7L S-(2-ACETAMIDOETHYL) (2R)-2-AZANYL-4-METHYL- HETNAM 2 E7L PENTANETHIOATE FORMUL 3 DLE C6 H13 N O2 FORMUL 4 SO4 5(O4 S 2-) FORMUL 7 YT3 3(Y 3+) FORMUL 9 E7L C10 H20 N2 O2 S FORMUL 13 HOH *108(H2 O) HELIX 1 AA1 GLU A 4 HIS A 22 1 19 HELIX 2 AA2 VAL A 64 ASP A 79 1 16 HELIX 3 AA3 PRO A 87 LEU A 91 5 5 HELIX 4 AA4 PRO A 102 ALA A 106 5 5 HELIX 5 AA5 THR A 107 SER A 113 1 7 HELIX 6 AA6 TYR A 132 ARG A 141 1 10 HELIX 7 AA7 SER A 155 SER A 170 1 16 HELIX 8 AA8 ASP A 173 LEU A 182 1 10 HELIX 9 AA9 LEU A 183 GLY A 187 5 5 HELIX 10 AB1 SER A 228 SER A 230 5 3 HELIX 11 AB2 LEU A 231 GLY A 236 1 6 HELIX 12 AB3 SER A 240 ARG A 249 1 10 HELIX 13 AB4 PRO A 250 LEU A 252 5 3 HELIX 14 AB5 ASP A 254 PHE A 258 5 5 HELIX 15 AB6 GLN A 260 LEU A 264 5 5 HELIX 16 AB7 PRO A 265 ARG A 273 1 9 HELIX 17 AB8 ALA A 334 LEU A 346 1 13 HELIX 18 AB9 PRO A 347 GLY A 350 5 4 HELIX 19 AC1 ASP A 369 LEU A 373 5 5 HELIX 20 AC2 GLY B 5 HIS B 22 1 18 HELIX 21 AC3 VAL B 64 ASP B 79 1 16 HELIX 22 AC4 PRO B 87 LEU B 91 5 5 HELIX 23 AC5 PRO B 102 ALA B 106 5 5 HELIX 24 AC6 THR B 107 SER B 113 1 7 HELIX 25 AC7 TYR B 132 ARG B 141 1 10 HELIX 26 AC8 SER B 155 SER B 170 1 16 HELIX 27 AC9 ASP B 173 LEU B 182 1 10 HELIX 28 AD1 LEU B 182 GLY B 187 1 6 HELIX 29 AD2 SER B 228 SER B 230 5 3 HELIX 30 AD3 LEU B 231 GLY B 236 1 6 HELIX 31 AD4 SER B 240 ARG B 249 1 10 HELIX 32 AD5 PRO B 250 LEU B 252 5 3 HELIX 33 AD6 ASP B 254 PHE B 258 5 5 HELIX 34 AD7 GLN B 260 LEU B 264 5 5 HELIX 35 AD8 PRO B 265 THR B 274 1 10 HELIX 36 AD9 ALA B 334 LEU B 346 1 13 HELIX 37 AE1 PRO B 347 GLY B 350 5 4 HELIX 38 AE2 ASP B 369 LEU B 373 5 5 SHEET 1 AA1 7 ALA A 36 GLY A 43 0 SHEET 2 AA1 7 GLY A 26 ARG A 33 -1 N LEU A 29 O TYR A 40 SHEET 3 AA1 7 LEU A 324 ALA A 330 -1 O ALA A 325 N TYR A 32 SHEET 4 AA1 7 ALA A 312 HIS A 319 -1 N ARG A 317 O LEU A 326 SHEET 5 AA1 7 TRP A 302 VAL A 309 -1 N VAL A 309 O ALA A 312 SHEET 6 AA1 7 MET A 293 HIS A 295 -1 N MET A 293 O GLY A 304 SHEET 7 AA1 7 GLY A 287 TRP A 288 -1 N GLY A 287 O ARG A 294 SHEET 1 AA2 2 PHE A 59 PRO A 60 0 SHEET 2 AA2 2 VAL A 238 GLY A 239 -1 O GLY A 239 N PHE A 59 SHEET 1 AA3 9 GLY A 374 ASN A 378 0 SHEET 2 AA3 9 LEU A 381 HIS A 387 -1 O LEU A 383 N TYR A 376 SHEET 3 AA3 9 LEU A 393 THR A 396 -1 O PHE A 394 N THR A 386 SHEET 4 AA3 9 TYR A 403 LEU A 407 -1 O LEU A 405 N LEU A 393 SHEET 5 AA3 9 LEU A 412 ARG A 416 -1 O ARG A 416 N ARG A 404 SHEET 6 AA3 9 ILE A 425 ARG A 431 -1 O GLY A 427 N PHE A 413 SHEET 7 AA3 9 VAL A 438 TYR A 443 -1 O ALA A 439 N VAL A 430 SHEET 8 AA3 9 ARG A 446 ARG A 450 -1 O ARG A 450 N ALA A 439 SHEET 9 AA3 9 GLY A 374 ASN A 378 -1 N ALA A 377 O HIS A 449 SHEET 1 AA4 7 ALA B 36 GLY B 43 0 SHEET 2 AA4 7 GLY B 26 ARG B 33 -1 N LEU B 29 O TYR B 40 SHEET 3 AA4 7 LEU B 324 ALA B 330 -1 O ALA B 325 N TYR B 32 SHEET 4 AA4 7 ALA B 312 HIS B 319 -1 N SER B 313 O ALA B 330 SHEET 5 AA4 7 TRP B 302 VAL B 309 -1 N TYR B 303 O ILE B 318 SHEET 6 AA4 7 MET B 293 HIS B 295 -1 N HIS B 295 O TRP B 302 SHEET 7 AA4 7 GLY B 287 TRP B 288 -1 N GLY B 287 O ARG B 294 SHEET 1 AA5 2 PHE B 59 PRO B 60 0 SHEET 2 AA5 2 VAL B 238 GLY B 239 -1 O GLY B 239 N PHE B 59 SHEET 1 AA6 9 GLY B 374 ASN B 378 0 SHEET 2 AA6 9 LEU B 381 HIS B 387 -1 O LEU B 383 N TYR B 376 SHEET 3 AA6 9 LEU B 393 THR B 396 -1 O PHE B 394 N THR B 386 SHEET 4 AA6 9 TYR B 403 LEU B 407 -1 O LEU B 405 N LEU B 393 SHEET 5 AA6 9 LEU B 412 SER B 417 -1 O ARG B 416 N ARG B 404 SHEET 6 AA6 9 ILE B 425 ARG B 431 -1 O ILE B 425 N ALA B 415 SHEET 7 AA6 9 VAL B 438 TYR B 443 -1 O GLN B 442 N ARG B 428 SHEET 8 AA6 9 ARG B 446 LEU B 451 -1 O ARG B 450 N ALA B 439 SHEET 9 AA6 9 GLY B 374 ASN B 378 -1 N THR B 375 O LEU B 451 LINK OG SER A 63 C DLE A 601 1555 1555 1.39 LINK OE1 GLU A 123 Y YT3 A 606 1555 1555 2.75 LINK OE2 GLU A 123 Y YT3 A 606 1555 1555 2.67 LINK OE1 GLU A 126 Y YT3 A 606 1555 1555 2.59 LINK OE2 GLU A 126 Y YT3 A 606 1555 1555 2.84 LINK Y YT3 A 605 OD2 ASP B 410 2646 1555 3.10 LINK Y YT3 A 606 O HOH A 702 1555 1555 3.43 LINK Y YT3 A 606 O HOH A 740 1555 1655 2.71 LINK OE1 GLU B 123 Y YT3 B 504 1555 1555 2.87 LINK OE2 GLU B 123 Y YT3 B 504 1555 1555 2.99 LINK OD1 ASP B 125 Y YT3 B 504 1555 1555 3.28 LINK OE1 GLU B 126 Y YT3 B 504 1555 1555 2.39 LINK OD1 ASP B 299 Y YT3 B 504 1555 1455 2.49 LINK OD2 ASP B 299 Y YT3 B 504 1555 1455 3.01 LINK OD2 ASP B 321 Y YT3 B 504 1555 1455 2.64 SITE 1 AC1 5 SER A 63 TYR A 154 MET A 226 ALA A 308 SITE 2 AC1 5 ARG A 446 SITE 1 AC2 4 ARG A 33 ASP A 34 ARG A 322 LEU A 324 SITE 1 AC3 5 TYR A 124 MET A 127 ARG A 128 GLY A 129 SITE 2 AC3 5 ARG A 134 SITE 1 AC4 4 ARG A 416 SER A 417 GLY A 418 ARG B 20 SITE 1 AC5 1 ASP A 86 SITE 1 AC6 4 GLU A 123 GLU A 126 ASP A 362 HOH A 740 SITE 1 AC7 8 SER B 63 TYR B 154 MET B 226 LEU B 284 SITE 2 AC7 8 ASP B 306 GLY B 307 ALA B 308 ARG B 446 SITE 1 AC8 3 ARG B 33 ARG B 322 LEU B 324 SITE 1 AC9 4 ARG A 20 ARG B 416 SER B 417 HOH B 616 SITE 1 AD1 5 GLU B 123 ASP B 125 GLU B 126 ASP B 299 SITE 2 AD1 5 ASP B 321 CRYST1 48.370 152.060 64.540 90.00 113.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020674 0.000000 0.008810 0.00000 SCALE2 0.000000 0.006576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016842 0.00000