HEADER HORMONE 28-AUG-19 6KTH TITLE CRYSTAL STRUCTURE OF JUVENILE HORMONE DIOL KINASE JHDK-L2 FROM TITLE 2 SILKWORM, BOMBYX MORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: JUVENILE HORMONE DIOL KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 GENE: JHDK-L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS KINASE, CATABOLISM, EF-HAND MOTIF, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.ZHANG,H.Y.XU,Z.WANG,L.ZHANG,P.ZHAO,P.C.GUO REVDAT 3 22-NOV-23 6KTH 1 REMARK REVDAT 2 07-APR-21 6KTH 1 JRNL REVDAT 1 02-SEP-20 6KTH 0 JRNL AUTH H.XU,Y.ZHANG,L.ZHANG,Z.WANG,P.GUO,P.ZHAO JRNL TITL STRUCTURAL CHARACTERIZATION AND FUNCTIONAL ANALYSIS OF JRNL TITL 2 JUVENILE HORMONE DIOL KINASE FROM THE SILKWORM, BOMBYX MORI. JRNL REF INT.J.BIOL.MACROMOL. V. 167 570 2021 JRNL REFN ISSN 0141-8130 JRNL PMID 33249150 JRNL DOI 10.1016/J.IJBIOMAC.2020.11.138 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.T.ERSKINE,G.D.BEAVEN,R.HAGAN,I.S.FINDLOW,J.M.WERNER, REMARK 1 AUTH 2 S.P.WOOD,J.VERNON,K.P.GIESE,G.FOX,J.B.COOPER REMARK 1 TITL STRUCTURE OF THE NEURONAL PROTEIN CALEXCITIN SUGGESTS A MODE REMARK 1 TITL 2 OF INTERACTION IN SIGNALLING PATHWAYS OF LEARNING AND REMARK 1 TITL 3 MEMORY. REMARK 1 REF J. MOL. BIOL. V. 357 1536 2006 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 16497326 REMARK 1 DOI 10.1016/J.JMB.2006.01.083 REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 67398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.085 REMARK 3 FREE R VALUE TEST SET COUNT : 3427 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4647 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.4600 REMARK 3 BIN FREE R VALUE SET COUNT : 259 REMARK 3 BIN FREE R VALUE : 0.4930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1515 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45100 REMARK 3 B22 (A**2) : -0.03100 REMARK 3 B33 (A**2) : -0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.486 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1556 ; 0.024 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1353 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2093 ; 2.467 ; 1.630 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3161 ; 1.716 ; 1.593 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 189 ; 5.026 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 83 ;33.019 ;24.940 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 264 ;11.867 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;24.819 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 191 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1768 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 349 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 377 ; 0.249 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 35 ; 0.232 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 810 ; 0.203 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 104 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.100 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 759 ; 1.665 ; 1.414 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 758 ; 1.648 ; 1.409 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 947 ; 2.602 ; 2.117 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 948 ; 2.609 ; 2.123 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 797 ; 3.446 ; 1.711 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 798 ; 3.450 ; 1.713 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1146 ; 4.934 ; 2.454 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1147 ; 4.948 ; 2.456 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0533 -9.7086 -10.4073 REMARK 3 T TENSOR REMARK 3 T11: 0.0164 T22: 0.0044 REMARK 3 T33: 0.0278 T12: -0.0032 REMARK 3 T13: -0.0028 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.0615 L22: 0.2677 REMARK 3 L33: 0.2520 L12: 0.1274 REMARK 3 L13: -0.0086 L23: -0.0282 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0050 S13: 0.0026 REMARK 3 S21: -0.0075 S22: 0.0088 S23: 0.0003 REMARK 3 S31: 0.0052 S32: -0.0158 S33: -0.0019 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 478 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5816 -10.5962 -8.6063 REMARK 3 T TENSOR REMARK 3 T11: 0.0119 T22: 0.0033 REMARK 3 T33: 0.0121 T12: -0.0001 REMARK 3 T13: -0.0068 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 0.2040 L22: 0.3382 REMARK 3 L33: 0.3824 L12: 0.1927 REMARK 3 L13: -0.0074 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: -0.0047 S12: 0.0156 S13: -0.0073 REMARK 3 S21: 0.0135 S22: 0.0109 S23: -0.0133 REMARK 3 S31: 0.0134 S32: -0.0187 S33: -0.0061 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 201 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): -17.9200 -8.2050 -25.2920 REMARK 3 T TENSOR REMARK 3 T11: 0.0447 T22: 0.0262 REMARK 3 T33: 0.0337 T12: -0.0250 REMARK 3 T13: -0.0110 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.0000 L22: 0.0000 REMARK 3 L33: 0.0000 L12: 0.0000 REMARK 3 L13: 0.0000 L23: 0.0000 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0000 S13: 0.0000 REMARK 3 S21: 0.0000 S22: 0.0000 S23: 0.0000 REMARK 3 S31: 0.0000 S32: 0.0000 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): -26.7318 -8.4017 -15.2982 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.0250 REMARK 3 T33: 0.0294 T12: -0.0031 REMARK 3 T13: -0.0247 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 93.6404 L22: 123.8346 REMARK 3 L33: 72.9950 L12: -16.9519 REMARK 3 L13: -25.3662 L23: -84.7693 REMARK 3 S TENSOR REMARK 3 S11: -0.2021 S12: 1.0819 S13: 0.5173 REMARK 3 S21: -1.3823 S22: 0.6367 S23: 0.2899 REMARK 3 S31: 1.1017 S32: -0.9156 S33: -0.4346 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6KTH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-19. REMARK 100 THE DEPOSITION ID IS D_1300013609. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67534 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 48.484 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 12.48 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 1.30400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2CCM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M POTASSIUM SODIUM TARTRATE REMARK 280 TETRAHYDRATE, 0.1M SODIUM CITRATE TRIBASIC DIHYRATE PH 5.6, 2 M REMARK 280 AMMONIUM SULFATE., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.98000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.73500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.73500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.98000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 36 CD GLU A 36 OE1 0.070 REMARK 500 GLU A 53 CD GLU A 53 OE1 0.068 REMARK 500 GLU A 86 CD GLU A 86 OE1 0.070 REMARK 500 SER A 121 CB SER A 121 OG -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP A 116 CB - CG - OD1 ANGL. DEV. = 8.2 DEGREES REMARK 500 PHE A 174 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 19 OD1 REMARK 620 2 ASN A 21 OD1 85.3 REMARK 620 3 SER A 23 OG 93.1 77.3 REMARK 620 4 THR A 25 O 85.7 152.3 77.1 REMARK 620 5 ASP A 30 OD1 87.9 74.0 151.0 131.8 REMARK 620 6 ASP A 30 OD2 99.2 125.2 155.0 82.2 51.8 REMARK 620 7 HOH A 347 O 173.5 88.2 85.3 100.1 90.4 84.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 DBREF 6KTH A 1 179 UNP H9JH18 H9JH18_BOMMO 1 179 SEQADV 6KTH MET A -21 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH HIS A -20 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH HIS A -19 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH HIS A -18 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH HIS A -17 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH HIS A -16 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH HIS A -15 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH SER A -14 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH SER A -13 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH GLY A -12 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH VAL A -11 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH ASP A -10 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH LEU A -9 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH GLY A -8 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH THR A -7 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH GLU A -6 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH ASN A -5 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH LEU A -4 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH TYR A -3 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH PHE A -2 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH GLN A -1 UNP H9JH18 EXPRESSION TAG SEQADV 6KTH SER A 0 UNP H9JH18 EXPRESSION TAG SEQRES 1 A 201 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 201 GLY THR GLU ASN LEU TYR PHE GLN SER MET VAL SER ASP SEQRES 3 A 201 PHE ARG LYS LYS LYS LEU LEU HIS VAL PHE THR ALA PHE SEQRES 4 A 201 PHE ASP THR ASN GLY SER GLY THR ILE ASP LYS LYS ASP SEQRES 5 A 201 PHE GLU LEU ALA ILE GLU ARG ILE SER LYS SER ARG GLY SEQRES 6 A 201 TRP SER ALA GLY ASP ALA GLN TYR LYS GLU VAL GLN ASP SEQRES 7 A 201 THR LEU LEU LYS VAL TRP ASP GLY LEU SER SER ALA ASP SEQRES 8 A 201 THR ASP ASN ASP GLY GLN VAL SER LYS GLU GLU TRP ILE SEQRES 9 A 201 SER LEU TRP GLU LYS PHE SER SER SER PRO SER ASP TRP SEQRES 10 A 201 GLN ASN LEU TYR CYS LYS PHE ILE PHE GLN LEU GLU ASP SEQRES 11 A 201 ALA SER ASN ASP GLY SER ILE ASP SER GLU GLU PHE SER SEQRES 12 A 201 SER VAL TYR ALA SER PHE GLY LEU ASP LYS ALA GLU ALA SEQRES 13 A 201 ALA SER ALA PHE GLN LYS LEU SER LYS GLY LYS SER SER SEQRES 14 A 201 VAL SER PHE ALA GLU PHE GLN GLU LEU PHE LYS GLU TYR SEQRES 15 A 201 PHE ALA SER GLU ASP VAL ASN ALA PRO GLY ASN PHE VAL SEQRES 16 A 201 PHE GLY LYS THR SER PHE HET CA A 201 1 HET GOL A 202 12 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *178(H2 O) HELIX 1 AA1 LEU A -9 GLU A -6 5 4 HELIX 2 AA2 ASN A -5 VAL A 2 1 8 HELIX 3 AA3 SER A 3 PHE A 18 1 16 HELIX 4 AA4 LYS A 28 ARG A 42 1 15 HELIX 5 AA5 ASP A 48 ALA A 68 1 21 HELIX 6 AA6 LYS A 78 LYS A 87 1 10 HELIX 7 AA7 SER A 93 ASP A 108 1 16 HELIX 8 AA8 ASP A 116 PHE A 127 1 12 HELIX 9 AA9 ASP A 130 SER A 142 1 13 HELIX 10 AB1 PHE A 150 SER A 163 1 14 HELIX 11 AB2 ALA A 168 VAL A 173 5 6 SHEET 1 AA1 2 THR A 25 ASP A 27 0 SHEET 2 AA1 2 GLN A 75 SER A 77 -1 O VAL A 76 N ILE A 26 SHEET 1 AA2 2 SER A 114 ILE A 115 0 SHEET 2 AA2 2 VAL A 148 SER A 149 -1 O VAL A 148 N ILE A 115 LINK OD1 ASP A 19 CA CA A 201 1555 1555 2.27 LINK OD1 ASN A 21 CA CA A 201 1555 1555 2.33 LINK OG SER A 23 CA CA A 201 1555 1555 2.50 LINK O THR A 25 CA CA A 201 1555 1555 2.31 LINK OD1 ASP A 30 CA CA A 201 1555 1555 2.59 LINK OD2 ASP A 30 CA CA A 201 1555 1555 2.41 LINK CA CA A 201 O HOH A 347 1555 1555 2.35 SITE 1 AC1 6 ASP A 19 ASN A 21 SER A 23 THR A 25 SITE 2 AC1 6 ASP A 30 HOH A 347 SITE 1 AC2 6 HIS A 12 THR A 15 ALA A 16 HOH A 306 SITE 2 AC2 6 HOH A 315 HOH A 377 CRYST1 47.960 67.570 69.470 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020851 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014395 0.00000