HEADER HYDROLASE 17-SEP-19 6KY9 TITLE CRYSTAL STRUCTURE OF ASFV DUTPASE AND UMP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: E165R; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: E165R CDS PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS; SOURCE 3 ORGANISM_COMMON: ASFV; SOURCE 4 ORGANISM_TAXID: 10497; SOURCE 5 GENE: E165R CDS, E165R, ASFV-GEORGIA_4-154; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS INHIBITOR, COMPLEX. DUTPASE, ASFV, E165R, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.LI,Y.CHAI,H.SONG,J.QI,Y.SUN,G.F.GAO REVDAT 2 22-NOV-23 6KY9 1 REMARK REVDAT 1 13-NOV-19 6KY9 0 JRNL AUTH C.LI,Y.CHAI,H.SONG,C.WENG,J.QI,Y.SUN,G.F.GAO JRNL TITL CRYSTAL STRUCTURE OF AFRICAN SWINE FEVER VIRUS DUTPASE JRNL TITL 2 REVEALS A POTENTIAL DRUG TARGET. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 31662460 JRNL DOI 10.1128/MBIO.02483-19 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6400 - 4.5237 1.00 2720 131 0.1607 0.1997 REMARK 3 2 4.5237 - 3.5915 1.00 2689 121 0.1484 0.1677 REMARK 3 3 3.5915 - 3.1378 1.00 2652 160 0.1672 0.1803 REMARK 3 4 3.1378 - 2.8510 1.00 2672 146 0.1838 0.1911 REMARK 3 5 2.8510 - 2.6467 1.00 2672 153 0.1941 0.2312 REMARK 3 6 2.6467 - 2.4907 1.00 2625 165 0.2000 0.2333 REMARK 3 7 2.4907 - 2.3660 1.00 2675 134 0.2049 0.2154 REMARK 3 8 2.3660 - 2.2630 1.00 2663 140 0.2107 0.2444 REMARK 3 9 2.2630 - 2.1759 1.00 2657 160 0.1996 0.2384 REMARK 3 10 2.1759 - 2.1008 1.00 2669 131 0.1933 0.2440 REMARK 3 11 2.1008 - 2.0351 1.00 2674 113 0.1990 0.2299 REMARK 3 12 2.0351 - 1.9770 1.00 2623 140 0.1978 0.2326 REMARK 3 13 1.9770 - 1.9249 1.00 2706 135 0.1955 0.2321 REMARK 3 14 1.9249 - 1.8780 1.00 2715 96 0.2102 0.2239 REMARK 3 15 1.8780 - 1.8353 1.00 2658 134 0.2137 0.2453 REMARK 3 16 1.8353 - 1.7962 1.00 2624 143 0.2193 0.2241 REMARK 3 17 1.7962 - 1.7603 1.00 2691 125 0.2226 0.2260 REMARK 3 18 1.7603 - 1.7271 1.00 2630 165 0.2393 0.2933 REMARK 3 19 1.7271 - 1.7000 0.97 2573 151 0.2443 0.2732 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.560 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 8.7993 -15.3993 8.6045 REMARK 3 T TENSOR REMARK 3 T11: 0.0580 T22: 0.0419 REMARK 3 T33: 0.0507 T12: 0.0098 REMARK 3 T13: 0.0227 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.0612 L22: 0.0115 REMARK 3 L33: 0.0207 L12: 0.0237 REMARK 3 L13: 0.0031 L23: -0.0058 REMARK 3 S TENSOR REMARK 3 S11: 0.0194 S12: -0.0220 S13: 0.0321 REMARK 3 S21: -0.0270 S22: -0.0428 S23: -0.0231 REMARK 3 S31: -0.0119 S32: 0.0195 S33: -0.0181 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 3.1280 -40.8559 2.9452 REMARK 3 T TENSOR REMARK 3 T11: 0.0889 T22: 0.0472 REMARK 3 T33: 0.0587 T12: 0.0208 REMARK 3 T13: -0.0000 T23: -0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.0151 L22: 0.0045 REMARK 3 L33: 0.0331 L12: -0.0070 REMARK 3 L13: 0.0036 L23: -0.0078 REMARK 3 S TENSOR REMARK 3 S11: -0.0045 S12: 0.0220 S13: -0.0229 REMARK 3 S21: -0.0729 S22: -0.0364 S23: 0.0250 REMARK 3 S31: 0.0385 S32: -0.0222 S33: -0.0601 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): 17.9728 -35.1892 23.7595 REMARK 3 T TENSOR REMARK 3 T11: 0.0445 T22: 0.1031 REMARK 3 T33: 0.0799 T12: 0.0126 REMARK 3 T13: -0.0141 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.0227 L22: 0.0251 REMARK 3 L33: 0.0023 L12: -0.0009 REMARK 3 L13: 0.0065 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: 0.0079 S12: -0.0113 S13: 0.0030 REMARK 3 S21: -0.0006 S22: -0.0301 S23: -0.0528 REMARK 3 S31: 0.0087 S32: 0.0407 S33: -0.0180 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013838. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03923 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53337 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.696 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1VYQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 3.5, 14% W/V REMARK 280 POLYETHYLENE GLYCOL 1,000., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.76450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 112.14675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 37.38225 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 145 REMARK 465 PRO A 146 REMARK 465 THR A 147 REMARK 465 PRO A 148 REMARK 465 ARG A 149 REMARK 465 GLY A 150 REMARK 465 GLU A 151 REMARK 465 GLY A 152 REMARK 465 ARG A 153 REMARK 465 PHE A 154 REMARK 465 GLY A 155 REMARK 465 SER A 156 REMARK 465 THR A 157 REMARK 465 GLY A 158 REMARK 465 GLU A 159 REMARK 465 ALA A 160 REMARK 465 GLY A 161 REMARK 465 ILE A 162 REMARK 465 MET A 163 REMARK 465 ARG A 164 REMARK 465 THR A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 MET B 1 REMARK 465 GLY B 150 REMARK 465 GLU B 151 REMARK 465 GLY B 152 REMARK 465 ARG B 153 REMARK 465 PHE B 154 REMARK 465 GLY B 155 REMARK 465 SER B 156 REMARK 465 THR B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 ALA B 160 REMARK 465 GLY B 161 REMARK 465 ILE B 162 REMARK 465 MET B 163 REMARK 465 ARG B 164 REMARK 465 THR B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 HIS B 170 REMARK 465 HIS B 171 REMARK 465 MET C 1 REMARK 465 LEU C 143 REMARK 465 PHE C 144 REMARK 465 ALA C 145 REMARK 465 PRO C 146 REMARK 465 THR C 147 REMARK 465 PRO C 148 REMARK 465 ARG C 149 REMARK 465 GLY C 150 REMARK 465 GLU C 151 REMARK 465 GLY C 152 REMARK 465 ARG C 153 REMARK 465 PHE C 154 REMARK 465 GLY C 155 REMARK 465 SER C 156 REMARK 465 THR C 157 REMARK 465 GLY C 158 REMARK 465 GLU C 159 REMARK 465 ALA C 160 REMARK 465 GLY C 161 REMARK 465 ILE C 162 REMARK 465 MET C 163 REMARK 465 ARG C 164 REMARK 465 THR C 165 REMARK 465 HIS C 166 REMARK 465 HIS C 167 REMARK 465 HIS C 168 REMARK 465 HIS C 169 REMARK 465 HIS C 170 REMARK 465 HIS C 171 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 62 O HOH B 301 1.99 REMARK 500 O HOH A 215 O HOH C 352 2.13 REMARK 500 O HOH C 341 O HOH C 417 2.14 REMARK 500 O HOH B 358 O HOH B 418 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 321 O HOH C 401 3544 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 25 69.23 -100.15 REMARK 500 CYS A 37 -9.33 73.87 REMARK 500 ASN A 138 -3.26 75.16 REMARK 500 VAL B 95 -9.96 -27.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR B 94 VAL B 95 -137.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 354 DISTANCE = 6.20 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP C 201 DBREF1 6KY9 A 1 165 UNP A0A2X0SE53_ASF DBREF2 6KY9 A A0A2X0SE53 1 165 DBREF1 6KY9 B 1 165 UNP A0A2X0SE53_ASF DBREF2 6KY9 B A0A2X0SE53 1 165 DBREF1 6KY9 C 1 165 UNP A0A2X0SE53_ASF DBREF2 6KY9 C A0A2X0SE53 1 165 SEQADV 6KY9 HIS A 166 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS A 167 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS A 168 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS A 169 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS A 170 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS A 171 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS B 166 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS B 167 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS B 168 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS B 169 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS B 170 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS B 171 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS C 166 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS C 167 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS C 168 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS C 169 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS C 170 UNP A0A2X0SE5 EXPRESSION TAG SEQADV 6KY9 HIS C 171 UNP A0A2X0SE5 EXPRESSION TAG SEQRES 1 A 171 MET ALA THR ASN PHE PHE ILE GLN PRO ILE THR GLU GLU SEQRES 2 A 171 ALA GLU ALA TYR TYR PRO PRO SER VAL ILE THR ASN LYS SEQRES 3 A 171 ARG LYS ASP LEU GLY VAL ASP VAL TYR CYS CYS SER ASP SEQRES 4 A 171 LEU VAL LEU GLN PRO GLY LEU ASN ILE VAL ARG LEU HIS SEQRES 5 A 171 ILE LYS VAL ALA CYS GLU HIS MET GLY LYS LYS CYS GLY SEQRES 6 A 171 PHE LYS ILE MET ALA ARG SER SER MET CYS THR HIS GLU SEQRES 7 A 171 ARG LEU LEU ILE LEU ALA ASN GLY ILE GLY LEU ILE ASP SEQRES 8 A 171 PRO GLY TYR VAL GLY GLU LEU MET LEU LYS ILE ILE ASN SEQRES 9 A 171 LEU GLY ASP THR PRO VAL GLN ILE TRP ALA LYS GLU CYS SEQRES 10 A 171 LEU VAL GLN LEU VAL ALA GLN GLY ASP HIS VAL PRO ASP SEQRES 11 A 171 HIS ILE ASN ILE LEU LYS ARG ASN GLN ILE PHE PRO LEU SEQRES 12 A 171 PHE ALA PRO THR PRO ARG GLY GLU GLY ARG PHE GLY SER SEQRES 13 A 171 THR GLY GLU ALA GLY ILE MET ARG THR HIS HIS HIS HIS SEQRES 14 A 171 HIS HIS SEQRES 1 B 171 MET ALA THR ASN PHE PHE ILE GLN PRO ILE THR GLU GLU SEQRES 2 B 171 ALA GLU ALA TYR TYR PRO PRO SER VAL ILE THR ASN LYS SEQRES 3 B 171 ARG LYS ASP LEU GLY VAL ASP VAL TYR CYS CYS SER ASP SEQRES 4 B 171 LEU VAL LEU GLN PRO GLY LEU ASN ILE VAL ARG LEU HIS SEQRES 5 B 171 ILE LYS VAL ALA CYS GLU HIS MET GLY LYS LYS CYS GLY SEQRES 6 B 171 PHE LYS ILE MET ALA ARG SER SER MET CYS THR HIS GLU SEQRES 7 B 171 ARG LEU LEU ILE LEU ALA ASN GLY ILE GLY LEU ILE ASP SEQRES 8 B 171 PRO GLY TYR VAL GLY GLU LEU MET LEU LYS ILE ILE ASN SEQRES 9 B 171 LEU GLY ASP THR PRO VAL GLN ILE TRP ALA LYS GLU CYS SEQRES 10 B 171 LEU VAL GLN LEU VAL ALA GLN GLY ASP HIS VAL PRO ASP SEQRES 11 B 171 HIS ILE ASN ILE LEU LYS ARG ASN GLN ILE PHE PRO LEU SEQRES 12 B 171 PHE ALA PRO THR PRO ARG GLY GLU GLY ARG PHE GLY SER SEQRES 13 B 171 THR GLY GLU ALA GLY ILE MET ARG THR HIS HIS HIS HIS SEQRES 14 B 171 HIS HIS SEQRES 1 C 171 MET ALA THR ASN PHE PHE ILE GLN PRO ILE THR GLU GLU SEQRES 2 C 171 ALA GLU ALA TYR TYR PRO PRO SER VAL ILE THR ASN LYS SEQRES 3 C 171 ARG LYS ASP LEU GLY VAL ASP VAL TYR CYS CYS SER ASP SEQRES 4 C 171 LEU VAL LEU GLN PRO GLY LEU ASN ILE VAL ARG LEU HIS SEQRES 5 C 171 ILE LYS VAL ALA CYS GLU HIS MET GLY LYS LYS CYS GLY SEQRES 6 C 171 PHE LYS ILE MET ALA ARG SER SER MET CYS THR HIS GLU SEQRES 7 C 171 ARG LEU LEU ILE LEU ALA ASN GLY ILE GLY LEU ILE ASP SEQRES 8 C 171 PRO GLY TYR VAL GLY GLU LEU MET LEU LYS ILE ILE ASN SEQRES 9 C 171 LEU GLY ASP THR PRO VAL GLN ILE TRP ALA LYS GLU CYS SEQRES 10 C 171 LEU VAL GLN LEU VAL ALA GLN GLY ASP HIS VAL PRO ASP SEQRES 11 C 171 HIS ILE ASN ILE LEU LYS ARG ASN GLN ILE PHE PRO LEU SEQRES 12 C 171 PHE ALA PRO THR PRO ARG GLY GLU GLY ARG PHE GLY SER SEQRES 13 C 171 THR GLY GLU ALA GLY ILE MET ARG THR HIS HIS HIS HIS SEQRES 14 C 171 HIS HIS HET UMP B 201 20 HET UMP B 202 20 HET UMP C 201 20 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETSYN UMP DUMP FORMUL 4 UMP 3(C9 H13 N2 O8 P) FORMUL 7 HOH *448(H2 O) HELIX 1 AA1 THR A 11 TYR A 18 1 8 HELIX 2 AA2 GLY A 125 HIS A 127 5 3 HELIX 3 AA3 THR B 11 TYR B 18 1 8 HELIX 4 AA4 SER B 72 CYS B 75 5 4 HELIX 5 AA5 GLY B 125 HIS B 127 5 3 HELIX 6 AA6 THR C 11 TYR C 18 1 8 HELIX 7 AA7 SER C 72 CYS C 75 5 4 HELIX 8 AA8 GLY C 125 HIS C 127 5 3 SHEET 1 AA1 5 SER A 21 THR A 24 0 SHEET 2 AA1 5 HIS A 131 ILE A 134 -1 O ILE A 132 N ILE A 23 SHEET 3 AA1 5 THR A 3 PRO A 9 1 N PHE A 5 O ASN A 133 SHEET 4 AA1 5 ILE A 53 HIS A 59 -1 O ALA A 56 N PHE A 6 SHEET 5 AA1 5 LYS A 62 CYS A 64 -1 O LYS A 62 N HIS A 59 SHEET 1 AA2 4 GLY A 31 VAL A 34 0 SHEET 2 AA2 4 VAL A 119 ALA A 123 -1 O LEU A 121 N VAL A 32 SHEET 3 AA2 4 PHE A 66 ALA A 70 -1 N LYS A 67 O VAL A 122 SHEET 4 AA2 4 GLY A 88 ILE A 90 -1 O GLY A 88 N ILE A 68 SHEET 1 AA3 2 LEU A 40 LEU A 42 0 SHEET 2 AA3 2 VAL A 110 ILE A 112 -1 O ILE A 112 N LEU A 40 SHEET 1 AA4 3 GLY A 45 ARG A 50 0 SHEET 2 AA4 3 MET A 99 ASN A 104 -1 O LEU A 100 N VAL A 49 SHEET 3 AA4 3 LEU A 81 LEU A 83 -1 N ILE A 82 O ILE A 103 SHEET 1 AA5 5 SER B 21 THR B 24 0 SHEET 2 AA5 5 HIS B 131 ILE B 134 -1 O ILE B 134 N SER B 21 SHEET 3 AA5 5 THR B 3 PRO B 9 1 N ILE B 7 O ASN B 133 SHEET 4 AA5 5 ILE B 53 HIS B 59 -1 O ALA B 56 N PHE B 6 SHEET 5 AA5 5 LYS B 62 CYS B 64 -1 O LYS B 62 N HIS B 59 SHEET 1 AA6 4 VAL B 32 VAL B 34 0 SHEET 2 AA6 4 VAL B 119 ALA B 123 -1 O LEU B 121 N VAL B 32 SHEET 3 AA6 4 PHE B 66 ALA B 70 -1 N LYS B 67 O VAL B 122 SHEET 4 AA6 4 GLY B 88 ILE B 90 -1 O ILE B 90 N PHE B 66 SHEET 1 AA7 2 LEU B 40 LEU B 42 0 SHEET 2 AA7 2 VAL B 110 ILE B 112 -1 O VAL B 110 N LEU B 42 SHEET 1 AA8 3 GLY B 45 ARG B 50 0 SHEET 2 AA8 3 MET B 99 ASN B 104 -1 O LEU B 100 N VAL B 49 SHEET 3 AA8 3 LEU B 81 LEU B 83 -1 N ILE B 82 O ILE B 103 SHEET 1 AA9 5 SER C 21 THR C 24 0 SHEET 2 AA9 5 HIS C 131 ILE C 134 -1 O ILE C 132 N ILE C 23 SHEET 3 AA9 5 THR C 3 PRO C 9 1 N PHE C 5 O ASN C 133 SHEET 4 AA9 5 ILE C 53 HIS C 59 -1 O ALA C 56 N PHE C 6 SHEET 5 AA9 5 LYS C 62 CYS C 64 -1 O CYS C 64 N CYS C 57 SHEET 1 AB1 4 GLY C 31 VAL C 34 0 SHEET 2 AB1 4 VAL C 119 ALA C 123 -1 O LEU C 121 N VAL C 32 SHEET 3 AB1 4 PHE C 66 ALA C 70 -1 N MET C 69 O GLN C 120 SHEET 4 AB1 4 GLY C 88 ILE C 90 -1 O ILE C 90 N PHE C 66 SHEET 1 AB2 2 LEU C 40 LEU C 42 0 SHEET 2 AB2 2 VAL C 110 ILE C 112 -1 O VAL C 110 N LEU C 42 SHEET 1 AB3 3 GLY C 45 ARG C 50 0 SHEET 2 AB3 3 MET C 99 ASN C 104 -1 O LEU C 100 N VAL C 49 SHEET 3 AB3 3 LEU C 81 LEU C 83 -1 N ILE C 82 O ILE C 103 SITE 1 AC1 16 ASN A 85 GLY A 88 LEU A 89 ILE A 90 SITE 2 AC1 16 ASP A 91 TYR A 94 MET A 99 ARG B 71 SITE 3 AC1 16 SER B 72 GLN B 120 HOH B 305 HOH B 310 SITE 4 AC1 16 HOH B 342 HOH B 369 HOH B 378 HOH B 384 SITE 1 AC2 16 ASN B 85 GLY B 88 LEU B 89 ILE B 90 SITE 2 AC2 16 ASP B 91 TYR B 94 MET B 99 HOH B 307 SITE 3 AC2 16 HOH B 315 HOH B 329 HOH B 359 HOH B 390 SITE 4 AC2 16 ARG C 71 SER C 72 GLN C 120 HOH C 346 SITE 1 AC3 14 SER A 72 GLN A 120 ASN C 85 GLY C 88 SITE 2 AC3 14 LEU C 89 ILE C 90 ASP C 91 TYR C 94 SITE 3 AC3 14 MET C 99 HOH C 303 HOH C 305 HOH C 323 SITE 4 AC3 14 HOH C 328 HOH C 348 CRYST1 57.418 57.418 149.529 90.00 90.00 90.00 P 43 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017416 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006688 0.00000