HEADER STRUCTURAL PROTEIN 20-SEP-19 6KYU TITLE COMPLEX ASSEMBLY, CRYSTALLIZATION AND PRELIMINARY X-RAY TITLE 2 CRYSTALLOGRAPHIC STUDIES OF DUCK MHC CLASS I MOLECULE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PEPTIDE; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANAS PLATYRHYNCHOS; SOURCE 3 ORGANISM_COMMON: MALLARD; SOURCE 4 ORGANISM_TAXID: 8839; SOURCE 5 GENE: APNL-UAA*B4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ANAS PLATYRHYNCHOS; SOURCE 10 ORGANISM_COMMON: MALLARD; SOURCE 11 ORGANISM_TAXID: 8839; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: DUCK TEMBUSU VIRUS; SOURCE 18 ORGANISM_TAXID: 1399582 KEYWDS MHC CLASS I STRUCTURE, PEPTIDE MOTIFS, RANDOM PEPTIDE LIBRARY, KEYWDS 2 STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.X.LIU,L.ZHANG,N.Z.ZHANG REVDAT 2 30-DEC-20 6KYU 1 SOURCE REVDAT 1 23-SEP-20 6KYU 0 JRNL AUTH Z.X.LIU,N.Z.ZHANG JRNL TITL COMPLEX ASSEMBLY, CRYSTALLIZATION AND PRELIMINARY X-RAY JRNL TITL 2 CRYSTALLOGRAPHIC ANALYSIS OF THE DUCK PANPL-UAA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69095 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.032 REMARK 3 FREE R VALUE TEST SET COUNT : 3477 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4764 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 246 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3095 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 576 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.068 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.271 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3182 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2804 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4315 ; 1.739 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6504 ; 1.479 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 376 ; 6.600 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 201 ;34.316 ;21.244 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 519 ;13.826 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3604 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 746 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 547 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 62 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1482 ; 0.176 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 361 ; 0.215 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.232 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1513 ; 1.745 ; 1.982 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1512 ; 1.739 ; 1.982 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1886 ; 2.540 ; 2.976 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1887 ; 2.541 ; 2.976 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1669 ; 3.321 ; 2.361 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1670 ; 3.320 ; 2.360 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2429 ; 5.033 ; 3.391 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2430 ; 5.032 ; 3.391 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6KYU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-SEP-19. REMARK 100 THE DEPOSITION ID IS D_1300013633. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 101015 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.260 REMARK 200 RESOLUTION RANGE LOW (A) : 19.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.3 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : 0.08600 REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.08600 REMARK 200 R SYM FOR SHELL (I) : 0.08600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% V/V TACSIMATE TM PH 7.0 0.1 M HEPES REMARK 280 PH 7.5 20% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.00467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.50233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.00467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.50233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 575 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 609 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 100 REMARK 465 PHE B 101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 194 O HOH A 301 1.58 REMARK 500 O HOH B 332 O HOH B 335 1.63 REMARK 500 O HOH A 558 O HOH A 597 1.90 REMARK 500 O HOH B 291 O HOH B 367 1.98 REMARK 500 N GLY B 1 O HOH B 201 2.03 REMARK 500 O HOH A 545 O HOH B 321 2.04 REMARK 500 O HOH B 251 O HOH B 324 2.06 REMARK 500 O HOH A 617 O HOH A 653 2.08 REMARK 500 OD2 ASP B 55 O HOH B 202 2.11 REMARK 500 O HOH A 572 O HOH A 615 2.12 REMARK 500 O HOH B 206 O HOH B 211 2.12 REMARK 500 NH2 ARG C 4 O HOH C 101 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 666 O HOH B 338 6555 1.75 REMARK 500 O HOH A 516 O HOH B 253 6555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 87 CD GLU B 87 OE2 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 160 -72.87 -120.40 REMARK 500 ALA A 192 -51.92 -124.06 REMARK 500 ASP A 193 64.42 -158.79 REMARK 500 LYS A 194 26.68 49.22 REMARK 500 GLN A 221 68.11 -108.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 687 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 688 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 689 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 690 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A 691 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH C 113 DISTANCE = 6.04 ANGSTROMS DBREF1 6KYU A 1 271 UNP A0A2Z4U0R6_ANAPL DBREF2 6KYU A A0A2Z4U0R6 22 292 DBREF 6KYU B 1 101 UNP Q14U75 Q14U75_ANAPL 19 119 DBREF 6KYU C 1 9 PDB 6KYU 6KYU 1 9 SEQADV 6KYU PHE A 123 UNP A0A2Z4U0R LEU 144 CONFLICT SEQRES 1 A 271 GLU PRO HIS SER LEU ARG TYR PHE ASP THR GLY VAL SER SEQRES 2 A 271 ASP PRO SER PRO GLY VAL PRO ARG PHE VAL SER VAL GLY SEQRES 3 A 271 TYR VAL ASP GLY HIS LEU ILE ASP HIS TYR ASP SER GLU SEQRES 4 A 271 THR GLN ARG THR GLU PRO ARG ALA ASP TRP PHE ALA ALA SEQRES 5 A 271 ASN THR ASP GLN GLN TYR TRP ASP ARG GLN THR GLU ILE SEQRES 6 A 271 SER ARG GLY ALA GLU GLN ILE PHE ARG LEU ASP LEU GLU SEQRES 7 A 271 THR LEU ARG GLU ARG TYR ASN GLN SER ARG GLY SER HIS SEQRES 8 A 271 THR TRP GLN LEU MET TYR GLY CYS ASP LEU LEU GLU ASP SEQRES 9 A 271 GLY SER THR ARG GLY PHE ARG GLN TYR GLY TYR GLU GLY SEQRES 10 A 271 ARG ASP PHE VAL ALA PHE ASP LYS ASP THR LEU THR PHE SEQRES 11 A 271 THR ALA ALA ASP ALA GLY ALA GLN ILE THR LYS ARG LYS SEQRES 12 A 271 TRP GLU GLN GLU GLY THR ASP ALA GLU ARG TRP LYS PHE SEQRES 13 A 271 TYR LEU GLU ASN THR CYS ILE GLU GLY LEU ARG LYS TYR SEQRES 14 A 271 VAL SER TYR GLY LYS ASP VAL LEU GLU ARG ARG GLU ARG SEQRES 15 A 271 PRO GLU VAL GLN VAL SER GLY MET GLU ALA ASP LYS ILE SEQRES 16 A 271 LEU THR LEU SER CYS ARG ALA HIS GLY PHE TYR PRO ARG SEQRES 17 A 271 PRO ILE SER ILE SER TRP LEU LYS ASP GLY MET VAL GLN SEQRES 18 A 271 GLU GLN GLU THR LYS ARG GLY SER THR VAL PRO ASN SER SEQRES 19 A 271 ASP GLY THR TYR HIS ILE TRP ALA THR ILE ASP VAL LEU SEQRES 20 A 271 PRO GLY GLU ARG ASP LYS TYR GLN CYS ARG VAL GLU HIS SEQRES 21 A 271 ALA SER LEU PRO GLN PRO GLY LEU PHE SER TRP SEQRES 1 B 101 GLY GLN ALA LYS ALA ALA PRO LYS VAL GLN VAL TYR SER SEQRES 2 B 101 ARG HIS PRO ALA THR ALA GLY THR GLU ASN ILE LEU ASN SEQRES 3 B 101 CYS TYR VAL GLU GLY PHE HIS PRO PRO LYS ILE ASP ILE SEQRES 4 B 101 ALA LEU LEU LYS ASN GLY GLU PRO MET LYS ASP VAL LYS SEQRES 5 B 101 TYR ASN ASP MET SER PHE GLY ASP ASP TRP THR PHE GLN SEQRES 6 B 101 ARG LEU VAL TYR ALA PRO PHE THR PRO THR LYS SER ASP SEQRES 7 B 101 VAL TYR THR CYS ARG VAL ASP HIS GLU ALA PHE THR GLU SEQRES 8 B 101 PRO GLN SER PHE ARG TRP GLU PRO ASP PHE SEQRES 1 C 9 LEU ARG LYS ARG GLN LEU THR VAL LEU FORMUL 4 HOH *576(H2 O) HELIX 1 AA1 ALA A 47 ALA A 52 1 6 HELIX 2 AA2 ASP A 55 TYR A 84 1 30 HELIX 3 AA3 ASP A 134 GLY A 136 5 3 HELIX 4 AA4 ALA A 137 GLN A 146 1 10 HELIX 5 AA5 GLU A 147 ASN A 160 1 14 HELIX 6 AA6 ASN A 160 GLY A 173 1 14 HELIX 7 AA7 GLY A 173 GLU A 178 1 6 HELIX 8 AA8 LEU A 247 ASP A 252 5 6 SHEET 1 AA1 8 GLU A 44 PRO A 45 0 SHEET 2 AA1 8 HIS A 31 ASP A 37 -1 N HIS A 35 O GLU A 44 SHEET 3 AA1 8 PHE A 22 VAL A 28 -1 N GLY A 26 O ILE A 33 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 92 LEU A 101 -1 O TRP A 93 N GLY A 11 SHEET 6 AA1 8 THR A 107 TYR A 115 -1 O PHE A 110 N GLY A 98 SHEET 7 AA1 8 ARG A 118 ASP A 124 -1 O PHE A 123 N ARG A 111 SHEET 8 AA1 8 THR A 129 ALA A 132 -1 O THR A 129 N ASP A 124 SHEET 1 AA2 4 GLU A 184 GLU A 191 0 SHEET 2 AA2 4 LEU A 196 PHE A 205 -1 O THR A 197 N MET A 190 SHEET 3 AA2 4 TYR A 238 VAL A 246 -1 O ILE A 244 N LEU A 198 SHEET 4 AA2 4 LYS A 226 ARG A 227 -1 N LYS A 226 O THR A 243 SHEET 1 AA3 4 GLU A 184 GLU A 191 0 SHEET 2 AA3 4 LEU A 196 PHE A 205 -1 O THR A 197 N MET A 190 SHEET 3 AA3 4 TYR A 238 VAL A 246 -1 O ILE A 244 N LEU A 198 SHEET 4 AA3 4 VAL A 231 PRO A 232 -1 N VAL A 231 O HIS A 239 SHEET 1 AA4 4 MET A 219 VAL A 220 0 SHEET 2 AA4 4 SER A 211 LYS A 216 -1 N LYS A 216 O MET A 219 SHEET 3 AA4 4 TYR A 254 GLU A 259 -1 O ARG A 257 N SER A 213 SHEET 4 AA4 4 GLY A 267 PHE A 269 -1 O GLY A 267 N VAL A 258 SHEET 1 AA5 4 LYS B 8 SER B 13 0 SHEET 2 AA5 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA5 4 PHE B 64 PHE B 72 -1 O ALA B 70 N LEU B 25 SHEET 4 AA5 4 LYS B 52 TYR B 53 -1 N LYS B 52 O TYR B 69 SHEET 1 AA6 4 LYS B 8 SER B 13 0 SHEET 2 AA6 4 ASN B 23 PHE B 32 -1 O ASN B 26 N TYR B 12 SHEET 3 AA6 4 PHE B 64 PHE B 72 -1 O ALA B 70 N LEU B 25 SHEET 4 AA6 4 SER B 57 PHE B 58 -1 N SER B 57 O GLN B 65 SHEET 1 AA7 4 GLU B 46 PRO B 47 0 SHEET 2 AA7 4 ASP B 38 LYS B 43 -1 N LYS B 43 O GLU B 46 SHEET 3 AA7 4 TYR B 80 ASP B 85 -1 O THR B 81 N LEU B 42 SHEET 4 AA7 4 GLN B 93 ARG B 96 -1 O GLN B 93 N VAL B 84 SSBOND 1 CYS A 99 CYS A 162 1555 1555 2.26 SSBOND 2 CYS A 200 CYS A 256 1555 1555 2.06 SSBOND 3 CYS B 27 CYS B 82 1555 1555 2.00 CISPEP 1 TYR A 206 PRO A 207 0 4.02 CISPEP 2 HIS B 33 PRO B 34 0 2.23 CRYST1 82.468 82.468 112.507 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012126 0.007001 0.000000 0.00000 SCALE2 0.000000 0.014002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008888 0.00000