HEADER TRANSFERASE 23-SEP-19 6KZC TITLE CRYSTAL STRUCTURE OF TRKC IN COMPLEX WITH 3-(IMIDAZO[1,2-A]PYRAZIN-3- TITLE 2 YLETHYNYL)-2-METHYL-N-(3-((4- METHYLPIPERAZIN-1-YL)METHYL)-5- TITLE 3 (TRIFLUOROMETHYL)PHENYL)BENZAMIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NT-3 GROWTH FACTOR RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GP145-TRKC,TRK-C,NEUROTROPHIC TYROSINE KINASE RECEPTOR TYPE COMPND 5 3,TRKC TYROSINE KINASE; COMPND 6 EC: 2.7.10.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NTRK3, TRKC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRKC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.M.ZHANG,Y.WANG REVDAT 2 27-MAR-24 6KZC 1 REMARK REVDAT 1 09-OCT-19 6KZC 0 JRNL AUTH S.CUI,Y.WANG,Y.WANG,X.TANG,X.REN,L.ZHANG,Y.XU,Z.ZHANG, JRNL AUTH 2 Z.M.ZHANG,X.LU,K.DING JRNL TITL DESIGN, SYNTHESIS AND BIOLOGICAL EVALUATION OF JRNL TITL 2 3-(IMIDAZO[1,2-A]PYRAZIN-3-YLETHYNYL)-2-METHYLBENZAMIDES AS JRNL TITL 3 POTENT AND SELECTIVE PAN-TROPOMYOSIN RECEPTOR KINASE (TRK) JRNL TITL 4 INHIBITORS. JRNL REF EUR.J.MED.CHEM. V. 179 470 2019 JRNL REFN ISSN 0223-5234 JRNL PMID 31271959 JRNL DOI 10.1016/J.EJMECH.2019.06.064 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 53.7 REMARK 3 NUMBER OF REFLECTIONS : 21574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1918 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 0.0000 - 4.8190 0.62 1637 161 0.2075 0.2246 REMARK 3 2 4.8190 - 3.8255 0.55 1451 142 0.1574 0.2015 REMARK 3 3 3.8255 - 3.3420 0.54 1410 141 0.1654 0.2042 REMARK 3 4 3.3420 - 3.0365 0.54 1398 130 0.1864 0.2083 REMARK 3 5 3.0365 - 2.8189 0.53 1408 138 0.1991 0.2583 REMARK 3 6 2.8189 - 2.6527 0.53 1386 134 0.0000 0.2186 REMARK 3 7 2.6527 - 2.5199 0.53 1389 135 0.1971 0.2464 REMARK 3 8 2.5199 - 2.4102 0.53 1363 128 0.1919 0.2567 REMARK 3 9 2.4102 - 2.3174 0.53 1381 140 0.1957 0.2630 REMARK 3 10 2.3174 - 2.2374 0.52 1367 139 0.1878 0.2118 REMARK 3 11 2.2374 - 2.1675 0.52 1357 126 0.1886 0.2276 REMARK 3 12 2.1675 - 2.1055 0.52 1399 132 0.1987 0.2366 REMARK 3 13 2.1055 - 2.0501 0.52 1339 148 0.1890 0.2534 REMARK 3 14 2.0501 - 2.0001 0.52 1371 124 0.0000 0.2476 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2343 REMARK 3 ANGLE : 0.719 3171 REMARK 3 CHIRALITY : 0.025 342 REMARK 3 PLANARITY : 0.003 397 REMARK 3 DIHEDRAL : 14.475 859 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 528 THROUGH 557 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4755 -27.0886 11.9359 REMARK 3 T TENSOR REMARK 3 T11: 0.1930 T22: 0.1677 REMARK 3 T33: 0.2036 T12: -0.0374 REMARK 3 T13: -0.0091 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 7.0891 L22: 2.3143 REMARK 3 L33: 3.6456 L12: -1.0812 REMARK 3 L13: 3.4225 L23: 0.0599 REMARK 3 S TENSOR REMARK 3 S11: -0.0703 S12: -0.0094 S13: 0.0327 REMARK 3 S21: 0.1197 S22: 0.0375 S23: -0.1712 REMARK 3 S31: 0.0127 S32: -0.0802 S33: 0.0028 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 558 THROUGH 578 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.3975 -27.6857 7.8552 REMARK 3 T TENSOR REMARK 3 T11: 0.2212 T22: 0.1360 REMARK 3 T33: 0.2554 T12: -0.0447 REMARK 3 T13: 0.0043 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 6.6368 L22: 3.0939 REMARK 3 L33: 4.7363 L12: 0.6908 REMARK 3 L13: -1.8972 L23: -0.0094 REMARK 3 S TENSOR REMARK 3 S11: -0.2843 S12: 0.5029 S13: -0.1891 REMARK 3 S21: -0.1471 S22: 0.3342 S23: -0.1116 REMARK 3 S31: 0.3494 S32: -0.0940 S33: 0.1187 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 579 THROUGH 594 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.7836 -18.7227 13.2732 REMARK 3 T TENSOR REMARK 3 T11: 0.2010 T22: 0.1658 REMARK 3 T33: 0.2418 T12: 0.0011 REMARK 3 T13: 0.0426 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 7.4763 L22: 7.9634 REMARK 3 L33: 4.1992 L12: 4.5354 REMARK 3 L13: -4.8820 L23: -5.1931 REMARK 3 S TENSOR REMARK 3 S11: -0.4033 S12: 0.2151 S13: -0.1360 REMARK 3 S21: -0.0701 S22: 0.1926 S23: 0.4591 REMARK 3 S31: 0.2597 S32: -0.3644 S33: 0.0663 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 595 THROUGH 738 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9240 -8.7628 14.6327 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1610 REMARK 3 T33: 0.1525 T12: 0.0135 REMARK 3 T13: 0.0052 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 0.7673 L22: 2.3949 REMARK 3 L33: 1.1458 L12: 0.4083 REMARK 3 L13: 0.2109 L23: 0.2642 REMARK 3 S TENSOR REMARK 3 S11: -0.0189 S12: -0.0604 S13: -0.0625 REMARK 3 S21: 0.1140 S22: 0.0626 S23: -0.1002 REMARK 3 S31: 0.0090 S32: -0.0210 S33: -0.0216 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 739 THROUGH 816 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2599 7.5307 21.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1441 REMARK 3 T33: 0.1641 T12: 0.0128 REMARK 3 T13: -0.0082 T23: -0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.6900 L22: 2.2252 REMARK 3 L33: 2.5395 L12: -0.1212 REMARK 3 L13: -0.4616 L23: -0.3202 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.1904 S13: 0.1290 REMARK 3 S21: 0.1741 S22: 0.0409 S23: 0.0314 REMARK 3 S31: -0.1324 S32: 0.0168 S33: -0.0262 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 817 THROUGH 837 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.6353 3.9623 0.3608 REMARK 3 T TENSOR REMARK 3 T11: 0.2534 T22: 0.2363 REMARK 3 T33: 0.2003 T12: 0.0340 REMARK 3 T13: -0.0259 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 6.1451 L22: 5.7761 REMARK 3 L33: 6.4590 L12: -3.2499 REMARK 3 L13: -4.9515 L23: 2.0685 REMARK 3 S TENSOR REMARK 3 S11: 0.1716 S12: 0.3681 S13: -0.1762 REMARK 3 S21: -0.3392 S22: -0.2057 S23: 0.0045 REMARK 3 S31: 0.0070 S32: 0.1224 S33: -0.0147 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6KZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ. REMARK 100 THE DEPOSITION ID IS D_1300013894. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22452 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1MMES, PH 6.0, 0.15M (NH4)2SO4, 15% REMARK 280 PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.90550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.44250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.20250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.44250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.90550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.20250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 637 REMARK 465 ILE A 638 REMARK 465 LEU A 639 REMARK 465 VAL A 640 REMARK 465 ASP A 641 REMARK 465 GLY A 642 REMARK 465 GLN A 643 REMARK 465 PRO A 644 REMARK 465 ARG A 645 REMARK 465 GLN A 646 REMARK 465 ALA A 647 REMARK 465 LYS A 648 REMARK 465 ASP A 703 REMARK 465 PHE A 713 REMARK 465 ASN A 714 REMARK 465 PRO A 715 REMARK 465 SER A 716 REMARK 465 GLY A 717 REMARK 465 ASN A 718 REMARK 465 ASP A 719 REMARK 465 PHE A 720 REMARK 465 CYS A 721 REMARK 465 ILE A 722 REMARK 465 TRP A 723 REMARK 465 CYS A 724 REMARK 465 GLU A 725 REMARK 465 VAL A 726 REMARK 465 GLY A 727 REMARK 465 GLY A 728 REMARK 465 LEU A 838 REMARK 465 GLY A 839 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 549 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 575 CG CD CE NZ REMARK 470 ARG A 587 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 712 CG CD1 CD2 REMARK 470 HIS A 729 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 768 CG CD CE NZ REMARK 470 ILE A 837 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1116 O HOH A 1134 2.06 REMARK 500 OE2 GLU A 546 O HOH A 1001 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 564 -5.75 65.40 REMARK 500 ARG A 678 -7.21 74.50 REMARK 500 ASP A 679 45.92 -143.17 REMARK 500 ALA A 830 67.84 -150.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DZC A 901 DBREF 6KZC A 528 839 UNP Q16288 NTRK3_HUMAN 528 839 SEQRES 1 A 312 THR TYR VAL GLN HIS ILE LYS ARG ARG ASP ILE VAL LEU SEQRES 2 A 312 LYS ARG GLU LEU GLY GLU GLY ALA PHE GLY LYS VAL PHE SEQRES 3 A 312 LEU ALA GLU CYS TYR ASN LEU SER PRO THR LYS ASP LYS SEQRES 4 A 312 MET LEU VAL ALA VAL LYS ALA LEU LYS ASP PRO THR LEU SEQRES 5 A 312 ALA ALA ARG LYS ASP PHE GLN ARG GLU ALA GLU LEU LEU SEQRES 6 A 312 THR ASN LEU GLN HIS GLU HIS ILE VAL LYS PHE TYR GLY SEQRES 7 A 312 VAL CYS GLY ASP GLY ASP PRO LEU ILE MET VAL PHE GLU SEQRES 8 A 312 TYR MET LYS HIS GLY ASP LEU ASN LYS PHE LEU ARG ALA SEQRES 9 A 312 HIS GLY PRO ASP ALA MET ILE LEU VAL ASP GLY GLN PRO SEQRES 10 A 312 ARG GLN ALA LYS GLY GLU LEU GLY LEU SER GLN MET LEU SEQRES 11 A 312 HIS ILE ALA SER GLN ILE ALA SER GLY MET VAL TYR LEU SEQRES 12 A 312 ALA SER GLN HIS PHE VAL HIS ARG ASP LEU ALA THR ARG SEQRES 13 A 312 ASN CYS LEU VAL GLY ALA ASN LEU LEU VAL LYS ILE GLY SEQRES 14 A 312 ASP PHE GLY MET SER ARG ASP VAL TYR SER THR ASP TYR SEQRES 15 A 312 TYR ARG LEU PHE ASN PRO SER GLY ASN ASP PHE CYS ILE SEQRES 16 A 312 TRP CYS GLU VAL GLY GLY HIS THR MET LEU PRO ILE ARG SEQRES 17 A 312 TRP MET PRO PRO GLU SER ILE MET TYR ARG LYS PHE THR SEQRES 18 A 312 THR GLU SER ASP VAL TRP SER PHE GLY VAL ILE LEU TRP SEQRES 19 A 312 GLU ILE PHE THR TYR GLY LYS GLN PRO TRP PHE GLN LEU SEQRES 20 A 312 SER ASN THR GLU VAL ILE GLU CYS ILE THR GLN GLY ARG SEQRES 21 A 312 VAL LEU GLU ARG PRO ARG VAL CYS PRO LYS GLU VAL TYR SEQRES 22 A 312 ASP VAL MET LEU GLY CYS TRP GLN ARG GLU PRO GLN GLN SEQRES 23 A 312 ARG LEU ASN ILE LYS GLU ILE TYR LYS ILE LEU HIS ALA SEQRES 24 A 312 LEU GLY LYS ALA THR PRO ILE TYR LEU ASP ILE LEU GLY HET DZC A 901 38 HETNAM DZC 3-(2-IMIDAZO[1,2-A]PYRAZIN-3-YLETHYNYL)-2-METHYL-~{N}- HETNAM 2 DZC [3-(4-METHYLPIPERAZIN-1-YL)-5-(TRIFLUOROMETHYL) HETNAM 3 DZC PHENYL]BENZAMIDE FORMUL 2 DZC C28 H25 F3 N6 O FORMUL 3 HOH *205(H2 O) HELIX 1 AA1 LYS A 534 ARG A 536 5 3 HELIX 2 AA2 THR A 578 LEU A 595 1 18 HELIX 3 AA3 ASP A 624 HIS A 632 1 9 HELIX 4 AA4 GLY A 652 GLN A 673 1 22 HELIX 5 AA5 ALA A 681 ARG A 683 5 3 HELIX 6 AA6 ALA A 689 LEU A 691 5 3 HELIX 7 AA7 PRO A 733 MET A 737 5 5 HELIX 8 AA8 PRO A 738 ARG A 745 1 8 HELIX 9 AA9 THR A 748 THR A 765 1 18 HELIX 10 AB1 SER A 775 GLN A 785 1 11 HELIX 11 AB2 PRO A 796 TRP A 807 1 12 HELIX 12 AB3 GLU A 810 ARG A 814 5 5 HELIX 13 AB4 ASN A 816 GLY A 828 1 13 SHEET 1 AA1 5 ILE A 538 GLY A 547 0 SHEET 2 AA1 5 GLY A 550 CYS A 557 -1 O LEU A 554 N ARG A 542 SHEET 3 AA1 5 MET A 567 LEU A 574 -1 O VAL A 571 N PHE A 553 SHEET 4 AA1 5 LEU A 613 GLU A 618 -1 O PHE A 617 N ALA A 570 SHEET 5 AA1 5 PHE A 603 VAL A 606 -1 N GLY A 605 O VAL A 616 SHEET 1 AA2 2 CYS A 685 VAL A 687 0 SHEET 2 AA2 2 VAL A 693 ILE A 695 -1 O LYS A 694 N LEU A 686 SHEET 1 AA3 2 TYR A 710 ARG A 711 0 SHEET 2 AA3 2 MET A 731 LEU A 732 -1 O LEU A 732 N TYR A 710 CISPEP 1 ASP A 611 PRO A 612 0 3.72 SITE 1 AC1 20 LEU A 544 ALA A 570 LYS A 572 GLU A 588 SITE 2 AC1 20 LEU A 591 LEU A 592 LEU A 595 ILE A 600 SITE 3 AC1 20 VAL A 601 PHE A 617 GLU A 618 TYR A 619 SITE 4 AC1 20 MET A 620 HIS A 677 LEU A 686 ILE A 695 SITE 5 AC1 20 GLY A 696 ASP A 697 PHE A 698 HOH A1129 CRYST1 51.811 54.405 108.885 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019301 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009184 0.00000