HEADER SUGAR BINDING PROTEIN 25-SEP-19 6KZR TITLE CRYSTAL STRUCTURE OF MOUSE DCAR2 CRD DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TYPE LECTIN DOMAIN FAMILY 4, MEMBER B1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DENDRITIC CELL IMMUNO-ACTIVATING RECEPTOR BETA ISOFORM; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CLEC4B1, CLEC4B, DCAR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C-TYPE LECTIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.OMAHDI,Y.HORIKAWA,K.TOYONAGA,T.TERAMOTO,Y.KAKUTA,S.YAMASAKI REVDAT 3 22-NOV-23 6KZR 1 LINK REVDAT 2 06-MAY-20 6KZR 1 JRNL REVDAT 1 25-MAR-20 6KZR 0 JRNL AUTH Z.OMAHDI,Y.HORIKAWA,M.NAGAE,K.TOYONAGA,A.IMAMURA,K.TAKATO, JRNL AUTH 2 T.TERAMOTO,H.ISHIDA,Y.KAKUTA,S.YAMASAKI JRNL TITL STRUCTURAL INSIGHT INTO THE RECOGNITION OF PATHOGEN-DERIVED JRNL TITL 2 PHOSPHOGLYCOLIPIDS BY C-TYPE LECTIN RECEPTOR DCAR. JRNL REF J.BIOL.CHEM. V. 295 5807 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32139512 JRNL DOI 10.1074/JBC.RA120.012491 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22002 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.186 REMARK 3 FREE R VALUE TEST SET COUNT : 1141 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1474 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2170 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 243 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23700 REMARK 3 B22 (A**2) : -0.17800 REMARK 3 B33 (A**2) : -0.05900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.214 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2353 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1995 ; 0.036 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3207 ; 1.407 ; 1.629 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4668 ; 2.370 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 6.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;34.397 ;23.435 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 386 ;15.537 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;11.376 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 286 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2656 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 527 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 576 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 48 ; 0.229 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1072 ; 0.171 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 177 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 9 ; 0.090 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1086 ; 3.754 ; 3.297 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1085 ; 3.742 ; 3.292 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 5.777 ; 4.927 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1365 ; 5.775 ; 4.933 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1267 ; 5.015 ; 3.791 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1268 ; 5.013 ; 3.792 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1837 ; 7.691 ; 5.469 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1838 ; 7.689 ; 5.470 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 6KZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300013936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22002 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 58.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6LFJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.98950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.55300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.21750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.55300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.98950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.21750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 60 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 74 REMARK 465 GLY A 75 REMARK 465 ASN A 208 REMARK 465 LEU A 209 REMARK 465 MET B 74 REMARK 465 GLY B 75 REMARK 465 ASN B 208 REMARK 465 LEU B 209 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 116 O HOH A 402 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 107 CB - CA - C ANGL. DEV. = 14.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 81 -10.28 81.37 REMARK 500 PHE A 96 104.66 -42.58 REMARK 500 ILE A 185 -54.76 -127.44 REMARK 500 ASP B 81 -12.53 83.43 REMARK 500 ILE B 185 -53.17 -122.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE1 REMARK 620 2 SER A 170 OG 75.6 REMARK 620 3 GLU A 174 OE1 139.8 70.8 REMARK 620 4 ASN A 190 OD1 69.7 143.5 145.6 REMARK 620 5 ASP A 191 O 127.8 138.5 71.6 74.8 REMARK 620 6 ASP A 191 OD1 70.5 81.8 83.3 96.6 77.2 REMARK 620 7 GOL A 301 O1 74.5 76.3 116.8 83.9 137.8 142.3 REMARK 620 8 GOL A 301 O2 138.0 103.1 72.3 95.5 81.2 151.4 64.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 168 OE1 REMARK 620 2 SER B 170 OG 77.4 REMARK 620 3 GLU B 174 OE1 137.1 65.1 REMARK 620 4 ASN B 190 OD1 72.3 146.9 147.9 REMARK 620 5 ASP B 191 O 129.5 132.7 71.7 78.6 REMARK 620 6 ASP B 191 OD1 68.6 84.1 87.0 96.9 75.2 REMARK 620 7 GOL B 302 O2 138.8 109.1 76.1 86.0 76.9 150.7 REMARK 620 8 GOL B 302 O3 76.7 75.3 110.9 84.9 140.7 142.7 66.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 DBREF 6KZR A 78 209 UNP Q9D8Q7 Q9D8Q7_MOUSE 45 176 DBREF 6KZR B 78 209 UNP Q9D8Q7 Q9D8Q7_MOUSE 45 176 SEQADV 6KZR MET A 74 UNP Q9D8Q7 INITIATING METHIONINE SEQADV 6KZR GLY A 75 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6KZR SER A 76 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6KZR MET A 77 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6KZR MET B 74 UNP Q9D8Q7 INITIATING METHIONINE SEQADV 6KZR GLY B 75 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6KZR SER B 76 UNP Q9D8Q7 EXPRESSION TAG SEQADV 6KZR MET B 77 UNP Q9D8Q7 EXPRESSION TAG SEQRES 1 A 136 MET GLY SER MET CYS PRO LYS ASP TRP LYS LEU PHE GLY SEQRES 2 A 136 SER HIS CYS TYR LEU VAL PRO THR VAL PHE SER SER ALA SEQRES 3 A 136 SER TRP ASN LYS SER GLU GLU ASN CYS SER ARG MET GLY SEQRES 4 A 136 ALA HIS LEU VAL VAL ILE HIS SER GLN GLU GLU GLN ASP SEQRES 5 A 136 PHE ILE THR GLY ILE LEU ASP ILE HIS ALA ALA TYR PHE SEQRES 6 A 136 ILE GLY LEU TRP ASP THR GLY HIS ARG GLN TRP GLN TRP SEQRES 7 A 136 VAL ASP GLN THR PRO TYR GLU GLU SER VAL THR PHE TRP SEQRES 8 A 136 HIS ASN GLY GLU PRO SER SER ASP ASN GLU LYS CYS VAL SEQRES 9 A 136 THR VAL TYR TYR ARG ARG ASN ILE GLY TRP GLY TRP ASN SEQRES 10 A 136 ASP ILE SER CYS ASN LEU LYS GLN LYS SER VAL CYS GLN SEQRES 11 A 136 MET LYS LYS ILE ASN LEU SEQRES 1 B 136 MET GLY SER MET CYS PRO LYS ASP TRP LYS LEU PHE GLY SEQRES 2 B 136 SER HIS CYS TYR LEU VAL PRO THR VAL PHE SER SER ALA SEQRES 3 B 136 SER TRP ASN LYS SER GLU GLU ASN CYS SER ARG MET GLY SEQRES 4 B 136 ALA HIS LEU VAL VAL ILE HIS SER GLN GLU GLU GLN ASP SEQRES 5 B 136 PHE ILE THR GLY ILE LEU ASP ILE HIS ALA ALA TYR PHE SEQRES 6 B 136 ILE GLY LEU TRP ASP THR GLY HIS ARG GLN TRP GLN TRP SEQRES 7 B 136 VAL ASP GLN THR PRO TYR GLU GLU SER VAL THR PHE TRP SEQRES 8 B 136 HIS ASN GLY GLU PRO SER SER ASP ASN GLU LYS CYS VAL SEQRES 9 B 136 THR VAL TYR TYR ARG ARG ASN ILE GLY TRP GLY TRP ASN SEQRES 10 B 136 ASP ILE SER CYS ASN LEU LYS GLN LYS SER VAL CYS GLN SEQRES 11 B 136 MET LYS LYS ILE ASN LEU HET GOL A 301 6 HET GOL A 302 6 HET CA A 303 1 HET CA B 301 1 HET GOL B 302 6 HET GOL B 303 6 HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 5 CA 2(CA 2+) FORMUL 9 HOH *243(H2 O) HELIX 1 AA1 SER A 100 MET A 111 1 12 HELIX 2 AA2 SER A 120 ILE A 130 1 11 HELIX 3 AA3 GLU A 158 THR A 162 5 5 HELIX 4 AA4 SER B 100 MET B 111 1 12 HELIX 5 AA5 SER B 120 ILE B 130 1 11 HELIX 6 AA6 GLU B 158 THR B 162 5 5 SHEET 1 AA1 4 LYS A 83 PHE A 85 0 SHEET 2 AA1 4 HIS A 88 LEU A 91 -1 O TYR A 90 N LYS A 83 SHEET 3 AA1 4 CYS A 202 LYS A 205 -1 O CYS A 202 N LEU A 91 SHEET 4 AA1 4 HIS A 114 LEU A 115 -1 N HIS A 114 O GLN A 203 SHEET 1 AA2 4 TRP A 149 TRP A 151 0 SHEET 2 AA2 4 TYR A 137 ASP A 143 -1 N TRP A 142 O GLN A 150 SHEET 3 AA2 4 CYS A 176 ARG A 182 -1 O VAL A 179 N TYR A 137 SHEET 4 AA2 4 GLY A 186 ILE A 192 -1 O ASN A 190 N THR A 178 SHEET 1 AA3 3 TRP A 149 TRP A 151 0 SHEET 2 AA3 3 TYR A 137 ASP A 143 -1 N TRP A 142 O GLN A 150 SHEET 3 AA3 3 LYS A 199 SER A 200 1 O LYS A 199 N PHE A 138 SHEET 1 AA4 4 LYS B 83 PHE B 85 0 SHEET 2 AA4 4 HIS B 88 LEU B 91 -1 O HIS B 88 N PHE B 85 SHEET 3 AA4 4 CYS B 202 LYS B 205 -1 O CYS B 202 N LEU B 91 SHEET 4 AA4 4 HIS B 114 LEU B 115 -1 N HIS B 114 O GLN B 203 SHEET 1 AA5 4 TRP B 149 TRP B 151 0 SHEET 2 AA5 4 TYR B 137 ASP B 143 -1 N TRP B 142 O GLN B 150 SHEET 3 AA5 4 CYS B 176 ARG B 182 -1 O VAL B 179 N TYR B 137 SHEET 4 AA5 4 GLY B 186 ILE B 192 -1 O ILE B 192 N CYS B 176 SHEET 1 AA6 3 TRP B 149 TRP B 151 0 SHEET 2 AA6 3 TYR B 137 ASP B 143 -1 N TRP B 142 O GLN B 150 SHEET 3 AA6 3 LYS B 199 SER B 200 1 O LYS B 199 N PHE B 138 SSBOND 1 CYS A 78 CYS A 89 1555 1555 2.11 SSBOND 2 CYS A 108 CYS A 202 1555 1555 2.08 SSBOND 3 CYS A 176 CYS A 194 1555 1555 2.08 SSBOND 4 CYS B 78 CYS B 89 1555 1555 2.08 SSBOND 5 CYS B 108 CYS B 202 1555 1555 2.07 SSBOND 6 CYS B 176 CYS B 194 1555 1555 2.08 LINK OE1 GLU A 168 CA CA A 303 1555 1555 2.52 LINK OG SER A 170 CA CA A 303 1555 1555 2.34 LINK OE1 GLU A 174 CA CA A 303 1555 1555 2.39 LINK OD1 ASN A 190 CA CA A 303 1555 1555 2.33 LINK O ASP A 191 CA CA A 303 1555 1555 2.33 LINK OD1 ASP A 191 CA CA A 303 1555 1555 2.32 LINK O1 GOL A 301 CA CA A 303 1555 1555 2.60 LINK O2 GOL A 301 CA CA A 303 1555 1555 2.64 LINK OE1 GLU B 168 CA CA B 301 1555 1555 2.46 LINK OG SER B 170 CA CA B 301 1555 1555 2.44 LINK OE1 GLU B 174 CA CA B 301 1555 1555 2.33 LINK OD1 ASN B 190 CA CA B 301 1555 1555 2.32 LINK O ASP B 191 CA CA B 301 1555 1555 2.32 LINK OD1 ASP B 191 CA CA B 301 1555 1555 2.33 LINK CA CA B 301 O2 GOL B 302 1555 1555 2.49 LINK CA CA B 301 O3 GOL B 302 1555 1555 2.63 CISPEP 1 GLU A 168 PRO A 169 0 -6.67 CISPEP 2 GLU B 168 PRO B 169 0 -4.36 SITE 1 AC1 8 GLU A 168 SER A 170 GLU A 174 ASN A 190 SITE 2 AC1 8 ASP A 191 CA A 303 HOH A 405 HOH A 464 SITE 1 AC2 5 TRP A 101 ASN A 102 LYS A 175 CYS A 194 SITE 2 AC2 5 HOH A 491 SITE 1 AC3 6 GLU A 168 SER A 170 GLU A 174 ASN A 190 SITE 2 AC3 6 ASP A 191 GOL A 301 SITE 1 AC4 6 GLU B 168 SER B 170 GLU B 174 ASN B 190 SITE 2 AC4 6 ASP B 191 GOL B 302 SITE 1 AC5 6 GLU B 168 SER B 170 GLU B 174 ASN B 190 SITE 2 AC5 6 ASP B 191 CA B 301 SITE 1 AC6 2 PHE B 163 TRP B 164 CRYST1 65.979 72.435 101.106 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015156 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009891 0.00000