HEADER METAL BINDING PROTEIN 29-SEP-19 6L1P TITLE CRYSTAL STRUCTURE OF PHF20L1 IN COMPLEX WITH HIT 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHD FINGER PROTEIN 20-LIKE PROTEIN 1; COMPND 3 CHAIN: B, A, C, D; COMPND 4 SYNONYM: PLANT HOMEODOMAIN (PHD) FINGER PROTEIN 20-LIKE 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PHF20L1, CGI-72; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHF20L1, TUDOR, HIT1, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.Q.LV,J.GAO REVDAT 3 22-NOV-23 6L1P 1 REMARK REVDAT 2 30-SEP-20 6L1P 1 JRNL REVDAT 1 23-SEP-20 6L1P 0 JRNL AUTH M.LV,J.GAO,M.LI,R.MA,F.LI,Y.LIU,M.LIU,J.ZHANG,X.YAO,J.WU, JRNL AUTH 2 Y.SHI,Y.TANG,Y.PAN,Z.ZHANG,K.RUAN JRNL TITL CONFORMATIONAL SELECTION IN LIGAND RECOGNITION BY THE FIRST JRNL TITL 2 TUDOR DOMAIN OF PHF20L1. JRNL REF J PHYS CHEM LETT V. 11 7932 2020 JRNL REFN ESSN 1948-7185 JRNL PMID 32885980 JRNL DOI 10.1021/ACS.JPCLETT.0C02039 REMARK 2 REMARK 2 RESOLUTION. 1.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 80879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4040 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8990 - 3.7793 1.00 2874 138 0.1843 0.1777 REMARK 3 2 3.7793 - 3.0002 1.00 2771 122 0.1791 0.2120 REMARK 3 3 3.0002 - 2.6211 1.00 2687 160 0.2040 0.2405 REMARK 3 4 2.6211 - 2.3815 1.00 2666 148 0.1956 0.2180 REMARK 3 5 2.3815 - 2.2108 1.00 2700 143 0.1842 0.1941 REMARK 3 6 2.2108 - 2.0805 1.00 2675 134 0.1778 0.2047 REMARK 3 7 2.0805 - 1.9763 1.00 2680 137 0.1795 0.1977 REMARK 3 8 1.9763 - 1.8903 1.00 2656 131 0.1815 0.1808 REMARK 3 9 1.8903 - 1.8175 1.00 2653 143 0.1772 0.1891 REMARK 3 10 1.8175 - 1.7548 1.00 2632 151 0.1701 0.1871 REMARK 3 11 1.7548 - 1.6999 1.00 2713 95 0.1864 0.2265 REMARK 3 12 1.6999 - 1.6513 1.00 2649 120 0.1792 0.1828 REMARK 3 13 1.6513 - 1.6078 1.00 2610 151 0.1775 0.2270 REMARK 3 14 1.6078 - 1.5686 1.00 2624 153 0.1684 0.1776 REMARK 3 15 1.5686 - 1.5330 1.00 2658 144 0.1725 0.1659 REMARK 3 16 1.5330 - 1.5003 1.00 2622 141 0.1801 0.1987 REMARK 3 17 1.5003 - 1.4703 1.00 2602 157 0.1732 0.2195 REMARK 3 18 1.4703 - 1.4426 1.00 2641 118 0.1778 0.1821 REMARK 3 19 1.4426 - 1.4168 1.00 2653 126 0.1785 0.2063 REMARK 3 20 1.4168 - 1.3928 1.00 2618 136 0.1832 0.1957 REMARK 3 21 1.3928 - 1.3703 1.00 2641 134 0.1828 0.1973 REMARK 3 22 1.3703 - 1.3492 1.00 2621 143 0.1846 0.1851 REMARK 3 23 1.3492 - 1.3294 1.00 2601 151 0.1846 0.1829 REMARK 3 24 1.3294 - 1.3107 1.00 2645 126 0.1915 0.1853 REMARK 3 25 1.3107 - 1.2930 1.00 2564 159 0.1907 0.2134 REMARK 3 26 1.2930 - 1.2762 1.00 2634 147 0.1863 0.2138 REMARK 3 27 1.2762 - 1.2602 1.00 2589 160 0.1929 0.1805 REMARK 3 28 1.2602 - 1.2450 1.00 2641 143 0.1960 0.2254 REMARK 3 29 1.2450 - 1.2310 0.98 2519 129 0.1959 0.2059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 70) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0123 8.3848 -12.7915 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.0770 REMARK 3 T33: 0.0863 T12: 0.0095 REMARK 3 T13: -0.0078 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.3187 L22: 1.2254 REMARK 3 L33: 1.6974 L12: 0.3262 REMARK 3 L13: -0.5444 L23: 0.2914 REMARK 3 S TENSOR REMARK 3 S11: 0.0118 S12: 0.1662 S13: 0.1394 REMARK 3 S21: -0.1664 S22: 0.0207 S23: 0.1010 REMARK 3 S31: -0.2264 S32: -0.1603 S33: -0.0151 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 3 THROUGH 70) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0484 -9.3665 12.6270 REMARK 3 T TENSOR REMARK 3 T11: 0.0544 T22: 0.0439 REMARK 3 T33: 0.0655 T12: 0.0041 REMARK 3 T13: 0.0032 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.2767 L22: 0.9436 REMARK 3 L33: 1.8849 L12: -0.1948 REMARK 3 L13: 0.2556 L23: -0.0834 REMARK 3 S TENSOR REMARK 3 S11: -0.0119 S12: -0.0729 S13: -0.0685 REMARK 3 S21: 0.0648 S22: 0.0018 S23: 0.0593 REMARK 3 S31: 0.1016 S32: -0.0588 S33: 0.0158 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1 THROUGH 70) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0982 -17.6345 -12.5147 REMARK 3 T TENSOR REMARK 3 T11: 0.0444 T22: 0.0490 REMARK 3 T33: 0.0609 T12: 0.0022 REMARK 3 T13: 0.0028 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.9451 L22: 0.7066 REMARK 3 L33: 1.7147 L12: 0.0921 REMARK 3 L13: 0.3791 L23: 0.2811 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: -0.0117 S13: -0.0324 REMARK 3 S21: 0.0223 S22: 0.0062 S23: -0.0219 REMARK 3 S31: 0.0851 S32: 0.1072 S33: -0.0102 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 2 THROUGH 70) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0099 16.4436 12.2415 REMARK 3 T TENSOR REMARK 3 T11: 0.0540 T22: 0.0568 REMARK 3 T33: 0.0750 T12: 0.0067 REMARK 3 T13: 0.0067 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.5572 L22: 0.9606 REMARK 3 L33: 2.6115 L12: -0.1333 REMARK 3 L13: -0.1253 L23: 0.1628 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: 0.0300 S13: 0.0485 REMARK 3 S21: -0.0758 S22: -0.0277 S23: -0.0751 REMARK 3 S31: -0.1632 S32: 0.1047 S33: -0.0172 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300013996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80879 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 36.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.28 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3SD4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M MAGNESIUM SULFATE, 0.1MM MES, PH REMARK 280 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.90050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.69600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.28700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.69600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.90050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.28700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 GLY D 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 39 CG CD OE1 OE2 REMARK 470 GLU B 40 CG CD OE1 OE2 REMARK 470 TRP B 60 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 60 CZ3 CH2 REMARK 470 ARG B 70 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 3 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 39 CG CD OE1 OE2 REMARK 470 MET A 43 CG SD CE REMARK 470 ARG A 70 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 7 CG OD1 ND2 REMARK 470 GLU C 34 CG CD OE1 OE2 REMARK 470 ARG C 70 CG CD NE CZ NH1 NH2 REMARK 470 SER D 2 OG REMARK 470 LYS D 42 CG CD CE NZ REMARK 470 ARG D 70 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN B 26 36.27 70.51 REMARK 500 ARG B 49 -17.97 86.90 REMARK 500 GLN A 26 36.97 70.01 REMARK 500 ARG A 49 -16.94 87.24 REMARK 500 GLN C 26 33.89 72.36 REMARK 500 ARG C 49 -17.20 87.34 REMARK 500 GLN D 26 36.29 72.76 REMARK 500 ARG D 49 -17.11 86.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E3X B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E3X A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E3X C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue E3X D 101 DBREF 6L1P B 5 70 UNP A8MW92 P20L1_HUMAN 5 70 DBREF 6L1P A 5 70 UNP A8MW92 P20L1_HUMAN 5 70 DBREF 6L1P C 5 70 UNP A8MW92 P20L1_HUMAN 5 70 DBREF 6L1P D 5 70 UNP A8MW92 P20L1_HUMAN 5 70 SEQADV 6L1P GLY B 1 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P SER B 2 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P HIS B 3 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P MET B 4 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P GLY A 1 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P SER A 2 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P HIS A 3 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P MET A 4 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P GLY C 1 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P SER C 2 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P HIS C 3 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P MET C 4 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P GLY D 1 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P SER D 2 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P HIS D 3 UNP A8MW92 EXPRESSION TAG SEQADV 6L1P MET D 4 UNP A8MW92 EXPRESSION TAG SEQRES 1 B 70 GLY SER HIS MET PRO PRO ASN ARG PRO GLY ILE THR PHE SEQRES 2 B 70 GLU ILE GLY ALA ARG LEU GLU ALA LEU ASP TYR LEU GLN SEQRES 3 B 70 LYS TRP TYR PRO SER ARG ILE GLU LYS ILE ASP TYR GLU SEQRES 4 B 70 GLU GLY LYS MET LEU VAL HIS PHE GLU ARG TRP SER HIS SEQRES 5 B 70 ARG TYR ASP GLU TRP ILE TYR TRP ASP SER ASN ARG LEU SEQRES 6 B 70 ARG PRO LEU GLU ARG SEQRES 1 A 70 GLY SER HIS MET PRO PRO ASN ARG PRO GLY ILE THR PHE SEQRES 2 A 70 GLU ILE GLY ALA ARG LEU GLU ALA LEU ASP TYR LEU GLN SEQRES 3 A 70 LYS TRP TYR PRO SER ARG ILE GLU LYS ILE ASP TYR GLU SEQRES 4 A 70 GLU GLY LYS MET LEU VAL HIS PHE GLU ARG TRP SER HIS SEQRES 5 A 70 ARG TYR ASP GLU TRP ILE TYR TRP ASP SER ASN ARG LEU SEQRES 6 A 70 ARG PRO LEU GLU ARG SEQRES 1 C 70 GLY SER HIS MET PRO PRO ASN ARG PRO GLY ILE THR PHE SEQRES 2 C 70 GLU ILE GLY ALA ARG LEU GLU ALA LEU ASP TYR LEU GLN SEQRES 3 C 70 LYS TRP TYR PRO SER ARG ILE GLU LYS ILE ASP TYR GLU SEQRES 4 C 70 GLU GLY LYS MET LEU VAL HIS PHE GLU ARG TRP SER HIS SEQRES 5 C 70 ARG TYR ASP GLU TRP ILE TYR TRP ASP SER ASN ARG LEU SEQRES 6 C 70 ARG PRO LEU GLU ARG SEQRES 1 D 70 GLY SER HIS MET PRO PRO ASN ARG PRO GLY ILE THR PHE SEQRES 2 D 70 GLU ILE GLY ALA ARG LEU GLU ALA LEU ASP TYR LEU GLN SEQRES 3 D 70 LYS TRP TYR PRO SER ARG ILE GLU LYS ILE ASP TYR GLU SEQRES 4 D 70 GLU GLY LYS MET LEU VAL HIS PHE GLU ARG TRP SER HIS SEQRES 5 D 70 ARG TYR ASP GLU TRP ILE TYR TRP ASP SER ASN ARG LEU SEQRES 6 D 70 ARG PRO LEU GLU ARG HET E3X B 101 14 HET GOL B 102 6 HET E3X A 101 14 HET GOL A 102 6 HET SO4 A 103 5 HET SO4 A 104 5 HET E3X C 101 14 HET SO4 C 102 5 HET SO4 C 103 5 HET E3X D 101 14 HETNAM E3X 4-(1-METHYL-3,6-DIHYDRO-2H-PYRIDIN-4-YL)PHENOL HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 E3X 4(C12 H15 N O) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 9 SO4 4(O4 S 2-) FORMUL 15 HOH *390(H2 O) HELIX 1 AA1 SER B 51 ASP B 55 5 5 HELIX 2 AA2 SER A 51 ASP A 55 5 5 HELIX 3 AA3 SER C 51 ASP C 55 5 5 HELIX 4 AA4 SER D 51 ASP D 55 5 5 SHEET 1 AA1 5 GLU B 56 TYR B 59 0 SHEET 2 AA1 5 LYS B 42 PHE B 47 -1 N VAL B 45 O GLU B 56 SHEET 3 AA1 5 TRP B 28 ASP B 37 -1 N ASP B 37 O LYS B 42 SHEET 4 AA1 5 ARG B 18 LEU B 22 -1 N LEU B 19 O SER B 31 SHEET 5 AA1 5 LEU B 65 ARG B 66 -1 O ARG B 66 N GLU B 20 SHEET 1 AA2 5 GLU A 56 TYR A 59 0 SHEET 2 AA2 5 LYS A 42 PHE A 47 -1 N VAL A 45 O GLU A 56 SHEET 3 AA2 5 TRP A 28 ASP A 37 -1 N GLU A 34 O LEU A 44 SHEET 4 AA2 5 ARG A 18 LEU A 22 -1 N LEU A 19 O SER A 31 SHEET 5 AA2 5 LEU A 65 ARG A 66 -1 O ARG A 66 N GLU A 20 SHEET 1 AA3 5 GLU C 56 TYR C 59 0 SHEET 2 AA3 5 LYS C 42 PHE C 47 -1 N VAL C 45 O GLU C 56 SHEET 3 AA3 5 TRP C 28 ASP C 37 -1 N GLU C 34 O LEU C 44 SHEET 4 AA3 5 ARG C 18 LEU C 22 -1 N LEU C 19 O SER C 31 SHEET 5 AA3 5 LEU C 65 ARG C 66 -1 O ARG C 66 N GLU C 20 SHEET 1 AA4 2 ASN D 7 ARG D 8 0 SHEET 2 AA4 2 ILE D 11 THR D 12 -1 O ILE D 11 N ARG D 8 SHEET 1 AA5 5 GLU D 56 TYR D 59 0 SHEET 2 AA5 5 LYS D 42 PHE D 47 -1 N VAL D 45 O GLU D 56 SHEET 3 AA5 5 TRP D 28 ASP D 37 -1 N GLU D 34 O LEU D 44 SHEET 4 AA5 5 ARG D 18 LEU D 22 -1 N LEU D 19 O SER D 31 SHEET 5 AA5 5 LEU D 65 ARG D 66 -1 O ARG D 66 N GLU D 20 SITE 1 AC1 7 ASP B 23 LEU B 25 TYR B 29 PHE B 47 SITE 2 AC1 7 TRP B 50 TYR B 54 ASN D 63 SITE 1 AC2 5 ILE B 58 TYR B 59 SER B 62 ARG B 64 SITE 2 AC2 5 HOH B 218 SITE 1 AC3 10 ASP A 23 TYR A 24 LEU A 25 TYR A 29 SITE 2 AC3 10 PHE A 47 TRP A 50 TYR A 54 HOH A 232 SITE 3 AC3 10 ARG B 49 ASN C 63 SITE 1 AC4 6 SER A 62 ASN A 63 ARG A 64 HOH A 204 SITE 2 AC4 6 HOH A 260 HOH A 279 SITE 1 AC5 10 ARG A 32 HIS A 46 GLU A 48 ARG A 49 SITE 2 AC5 10 TRP A 50 HOH A 203 HOH A 247 HOH A 265 SITE 3 AC5 10 SER B 51 ARG B 53 SITE 1 AC6 11 SER A 51 ARG A 53 HOH A 233 HOH A 255 SITE 2 AC6 11 ARG B 32 HIS B 46 GLU B 48 ARG B 49 SITE 3 AC6 11 TRP B 50 HOH B 232 HOH C 202 SITE 1 AC7 8 ASN B 63 ASP C 23 LEU C 25 TYR C 29 SITE 2 AC7 8 PHE C 47 TRP C 50 TYR C 54 ARG D 49 SITE 1 AC8 11 HOH B 227 HOH B 237 SER C 51 ARG C 53 SITE 2 AC8 11 HOH C 209 HOH C 263 ARG D 32 HIS D 46 SITE 3 AC8 11 GLU D 48 ARG D 49 TRP D 50 SITE 1 AC9 11 HOH A 206 ARG C 32 HIS C 46 GLU C 48 SITE 2 AC9 11 ARG C 49 TRP C 50 HOH C 221 HOH C 230 SITE 3 AC9 11 HOH C 254 SER D 51 ARG D 53 SITE 1 AD1 9 ASN A 63 ARG C 49 ASP D 23 LEU D 25 SITE 2 AD1 9 TYR D 29 PHE D 47 TRP D 50 TYR D 54 SITE 3 AD1 9 HOH D 227 CRYST1 51.801 52.574 101.392 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019021 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009863 0.00000