HEADER RNA BINDING PROTEIN/RNA 30-SEP-19 6L1W TITLE ZINC-FINGER ANTIVIRAL PROTEIN (ZAP) BOUND TO RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER CCCH-TYPE ANTIVIRAL PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 13,ARTD13, COMPND 5 INACTIVE POLY [ADP-RIBOSE] POLYMERASE 13,PARP13; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'-R(*CP*GP*UP*CP*GP*U)-3'); COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZC3HAV1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: VIRUS-ASSOCIATED RNAS; SOURCE 11 ORGANISM_TAXID: 1425366 KEYWDS RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.LUO,X.WANG,Y.GAO,J.ZHU,S.LIU,G.GAO,P.GAO REVDAT 3 22-NOV-23 6L1W 1 REMARK REVDAT 2 22-JAN-20 6L1W 1 JRNL REVDAT 1 01-JAN-20 6L1W 0 JRNL AUTH X.LUO,X.WANG,Y.GAO,J.ZHU,S.LIU,G.GAO,P.GAO JRNL TITL MOLECULAR MECHANISM OF RNA RECOGNITION BY ZINC-FINGER JRNL TITL 2 ANTIVIRAL PROTEIN. JRNL REF CELL REP V. 30 46 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 31914396 JRNL DOI 10.1016/J.CELREP.2019.11.116 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 12471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2740 - 3.4815 1.00 3127 150 0.1896 0.2056 REMARK 3 2 3.4815 - 2.7636 1.00 2996 143 0.2071 0.2503 REMARK 3 3 2.7636 - 2.4143 1.00 2931 160 0.2243 0.3033 REMARK 3 4 2.4143 - 2.1940 0.97 2808 156 0.2434 0.3012 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1893 REMARK 3 ANGLE : 0.875 2571 REMARK 3 CHIRALITY : 0.052 292 REMARK 3 PLANARITY : 0.006 315 REMARK 3 DIHEDRAL : 15.381 743 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 4:66 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.426 64.923 10.528 REMARK 3 T TENSOR REMARK 3 T11: 0.6219 T22: 0.2139 REMARK 3 T33: 0.3268 T12: -0.0187 REMARK 3 T13: 0.0428 T23: 0.0450 REMARK 3 L TENSOR REMARK 3 L11: 1.7361 L22: 2.3514 REMARK 3 L33: 2.2533 L12: -0.0062 REMARK 3 L13: 0.9721 L23: -0.3935 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: -0.1353 S13: -0.4454 REMARK 3 S21: -0.0637 S22: -0.0634 S23: 0.0910 REMARK 3 S31: 1.2340 S32: -0.2481 S33: -0.0307 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 67:86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.181 91.469 16.700 REMARK 3 T TENSOR REMARK 3 T11: 0.1835 T22: 0.1404 REMARK 3 T33: 0.2376 T12: -0.0195 REMARK 3 T13: -0.0219 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 1.4073 L22: 3.6435 REMARK 3 L33: 2.6213 L12: -0.3805 REMARK 3 L13: -0.1401 L23: 1.4229 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: -0.2045 S13: 0.2989 REMARK 3 S21: -0.2996 S22: -0.2536 S23: 0.3086 REMARK 3 S31: -0.4788 S32: -0.2568 S33: 0.2818 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 87:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.871 91.063 21.830 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.7509 REMARK 3 T33: 0.3689 T12: -0.3208 REMARK 3 T13: -0.2902 T23: -0.1561 REMARK 3 L TENSOR REMARK 3 L11: 2.7562 L22: 3.5739 REMARK 3 L33: 2.0678 L12: -1.7332 REMARK 3 L13: -0.7584 L23: -1.5135 REMARK 3 S TENSOR REMARK 3 S11: 0.2836 S12: -1.2585 S13: 0.5568 REMARK 3 S21: 0.6856 S22: -0.2441 S23: -1.5589 REMARK 3 S31: -0.5661 S32: 1.2507 S33: 0.0525 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 115:141 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.768 79.593 19.909 REMARK 3 T TENSOR REMARK 3 T11: 0.2019 T22: 0.2488 REMARK 3 T33: 0.1703 T12: -0.0276 REMARK 3 T13: -0.0005 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 2.3705 L22: 2.4041 REMARK 3 L33: 3.2439 L12: 0.3626 REMARK 3 L13: -0.0947 L23: -0.1326 REMARK 3 S TENSOR REMARK 3 S11: 0.0799 S12: -0.5803 S13: -0.1680 REMARK 3 S21: 0.4784 S22: -0.1562 S23: -0.1077 REMARK 3 S31: 0.1610 S32: 0.0442 S33: 0.0766 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN A AND RESID 142:160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.990 92.830 -3.561 REMARK 3 T TENSOR REMARK 3 T11: 0.4654 T22: 0.4573 REMARK 3 T33: 0.3719 T12: 0.0089 REMARK 3 T13: 0.1101 T23: 0.1993 REMARK 3 L TENSOR REMARK 3 L11: 1.8066 L22: 2.0159 REMARK 3 L33: 4.8406 L12: 0.2564 REMARK 3 L13: 0.0497 L23: -0.8136 REMARK 3 S TENSOR REMARK 3 S11: 0.0288 S12: 0.7154 S13: 0.7265 REMARK 3 S21: -0.8468 S22: -0.2129 S23: -0.3811 REMARK 3 S31: -0.4187 S32: 0.1273 S33: 0.1144 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN A AND RESID 161:178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.377 93.912 -5.168 REMARK 3 T TENSOR REMARK 3 T11: 0.5160 T22: 0.3869 REMARK 3 T33: 0.3201 T12: -0.1525 REMARK 3 T13: -0.0049 T23: 0.1173 REMARK 3 L TENSOR REMARK 3 L11: 4.0268 L22: 2.3577 REMARK 3 L33: 2.7734 L12: 0.2469 REMARK 3 L13: 0.3203 L23: 0.9242 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: 0.3559 S13: 0.6154 REMARK 3 S21: -0.0508 S22: 0.0646 S23: -0.2135 REMARK 3 S31: -1.1507 S32: 0.7247 S33: -0.1995 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN A AND RESID 179:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.967 85.326 -4.086 REMARK 3 T TENSOR REMARK 3 T11: 0.3550 T22: 0.3972 REMARK 3 T33: 0.2534 T12: 0.0094 REMARK 3 T13: 0.1047 T23: 0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.8977 L22: 3.0755 REMARK 3 L33: 2.4606 L12: 0.6616 REMARK 3 L13: -0.3052 L23: 0.5045 REMARK 3 S TENSOR REMARK 3 S11: -0.1560 S12: 0.4326 S13: 0.0713 REMARK 3 S21: -0.6232 S22: 0.1756 S23: -0.2718 REMARK 3 S31: -0.5981 S32: 0.3509 S33: -0.0945 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: ( CHAIN A AND RESID 209:225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.127 77.557 -0.092 REMARK 3 T TENSOR REMARK 3 T11: 0.1837 T22: 0.1353 REMARK 3 T33: 0.1588 T12: 0.0310 REMARK 3 T13: 0.0574 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.1562 L22: 3.7647 REMARK 3 L33: 4.5579 L12: 0.9461 REMARK 3 L13: -0.0002 L23: -0.1264 REMARK 3 S TENSOR REMARK 3 S11: 0.1021 S12: 0.1204 S13: -0.1092 REMARK 3 S21: -0.2241 S22: -0.0397 S23: -0.0124 REMARK 3 S31: 0.3411 S32: 0.1054 S33: -0.0544 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: ( CHAIN C AND RESID -2:2 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.770 98.902 9.196 REMARK 3 T TENSOR REMARK 3 T11: 0.3874 T22: 0.4806 REMARK 3 T33: 0.3845 T12: -0.2006 REMARK 3 T13: 0.0137 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: -0.0397 L22: -0.0435 REMARK 3 L33: -0.0294 L12: 0.1222 REMARK 3 L13: -0.0424 L23: -0.0534 REMARK 3 S TENSOR REMARK 3 S11: -0.0136 S12: 0.1080 S13: 0.1008 REMARK 3 S21: -0.4228 S22: 0.0133 S23: 0.1226 REMARK 3 S31: 0.2469 S32: -0.2104 S33: 0.1597 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: ( CHAIN C AND RESID 4:4 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.932 94.589 15.551 REMARK 3 T TENSOR REMARK 3 T11: 0.9809 T22: 1.5031 REMARK 3 T33: 1.5680 T12: -0.3450 REMARK 3 T13: -0.0598 T23: 0.2240 REMARK 3 L TENSOR REMARK 3 L11: 0.0010 L22: -0.0008 REMARK 3 L33: 0.0001 L12: -0.0001 REMARK 3 L13: -0.0012 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0749 S12: 0.0401 S13: 0.0638 REMARK 3 S21: -0.0012 S22: 0.1079 S23: -0.1642 REMARK 3 S31: -0.0545 S32: 0.0456 S33: -0.0781 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300014018. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12471 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.28600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3U9G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 7.5, 0.25 M MGCL2, 18% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.22500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.08600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.27400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.08600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.22500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.27400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 THR A 54 REMARK 465 GLY A 55 REMARK 465 ASP A 56 REMARK 465 GLN A 57 REMARK 465 ALA A 58 REMARK 465 GLY A 59 REMARK 465 ILE A 60 REMARK 465 ARG A 226 REMARK 465 ASN A 227 REMARK 465 U C 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 100 -53.51 -120.07 REMARK 500 ARG A 103 -50.26 70.26 REMARK 500 ASN A 104 -169.56 -76.55 REMARK 500 LEU A 113 43.60 -99.86 REMARK 500 LYS A 159 36.97 -149.06 REMARK 500 ILE A 161 71.25 -66.74 REMARK 500 CYS A 162 36.94 -93.12 REMARK 500 PRO A 167 141.57 -38.08 REMARK 500 HIS A 172 72.32 -100.19 REMARK 500 ASN A 181 24.53 -141.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 73 SG REMARK 620 2 CYS A 78 SG 114.9 REMARK 620 3 CYS A 82 SG 114.3 107.9 REMARK 620 4 HIS A 86 NE2 104.8 103.6 110.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 88 SG REMARK 620 2 CYS A 96 SG 113.4 REMARK 620 3 CYS A 106 SG 104.2 116.9 REMARK 620 4 HIS A 110 NE2 110.7 104.0 107.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 150 SG REMARK 620 2 CYS A 162 SG 93.8 REMARK 620 3 CYS A 168 SG 124.7 126.3 REMARK 620 4 HIS A 172 NE2 121.1 99.5 91.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 174 SG REMARK 620 2 CYS A 182 SG 108.7 REMARK 620 3 CYS A 187 SG 108.1 112.2 REMARK 620 4 HIS A 191 NE2 122.6 97.6 107.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 DBREF 6L1W A 1 227 UNP Q3UPF5 ZCCHV_MOUSE 1 227 DBREF 6L1W C -2 5 PDB 6L1W 6L1W -2 5 SEQADV 6L1W SER A 0 UNP Q3UPF5 EXPRESSION TAG SEQRES 1 A 228 SER MET THR ASP PRO GLU VAL PHE CYS PHE ILE THR LYS SEQRES 2 A 228 ILE LEU CYS ALA HIS GLY GLY ARG MET THR LEU GLU GLU SEQRES 3 A 228 LEU LEU GLY GLU ILE SER LEU PRO GLU ALA GLN LEU TYR SEQRES 4 A 228 GLU LEU LEU LYS ALA ALA GLY PRO ASP ARG PHE VAL LEU SEQRES 5 A 228 LEU GLU THR GLY ASP GLN ALA GLY ILE THR ARG SER VAL SEQRES 6 A 228 VAL ALA THR THR ARG ALA ARG VAL CYS ARG ARG LYS TYR SEQRES 7 A 228 CYS GLN ARG PRO CYS ASP SER LEU HIS LEU CYS LYS LEU SEQRES 8 A 228 ASN LEU LEU GLY ARG CYS HIS TYR ALA GLN SER GLN ARG SEQRES 9 A 228 ASN LEU CYS LYS TYR SER HIS ASP VAL LEU SER GLU GLN SEQRES 10 A 228 ASN PHE GLN VAL LEU LYS ASN HIS GLU LEU SER GLY LEU SEQRES 11 A 228 ASN GLN GLU GLU LEU ALA VAL LEU LEU VAL GLN SER ASP SEQRES 12 A 228 PRO PHE PHE MET PRO GLU ILE CYS LYS SER TYR LYS GLY SEQRES 13 A 228 GLU GLY ARG LYS GLN ILE CYS GLY GLN PRO GLN PRO CYS SEQRES 14 A 228 GLU ARG LEU HIS ILE CYS GLU HIS PHE THR ARG GLY ASN SEQRES 15 A 228 CYS SER TYR LEU ASN CYS LEU ARG SER HIS ASN LEU MET SEQRES 16 A 228 ASP ARG LYS VAL LEU ALA ILE MET ARG GLU HIS GLY LEU SEQRES 17 A 228 SER SER ASP VAL VAL GLN ASN ILE GLN ASP ILE CYS ASN SEQRES 18 A 228 ASN LYS HIS THR ARG ARG ASN SEQRES 1 C 7 C G U C G U U HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *99(H2 O) HELIX 1 AA1 GLU A 5 HIS A 17 1 13 HELIX 2 AA2 LEU A 23 GLY A 28 1 6 HELIX 3 AA3 PRO A 33 GLY A 45 1 13 HELIX 4 AA4 CYS A 88 LEU A 93 1 6 HELIX 5 AA5 SER A 114 HIS A 124 1 11 HELIX 6 AA6 ASN A 130 ASP A 142 1 13 HELIX 7 AA7 PRO A 143 MET A 146 5 4 HELIX 8 AA8 CYS A 174 ARG A 179 1 6 HELIX 9 AA9 ASP A 195 GLY A 206 1 12 HELIX 10 AB1 SER A 208 THR A 224 1 17 SHEET 1 AA1 3 ARG A 20 THR A 22 0 SHEET 2 AA1 3 SER A 63 ALA A 66 -1 O VAL A 64 N MET A 21 SHEET 3 AA1 3 PHE A 49 LEU A 52 -1 N VAL A 50 O VAL A 65 LINK SG CYS A 73 ZN ZN A 302 1555 1555 2.35 LINK SG CYS A 78 ZN ZN A 302 1555 1555 2.36 LINK SG CYS A 82 ZN ZN A 302 1555 1555 2.34 LINK NE2 HIS A 86 ZN ZN A 302 1555 1555 1.99 LINK SG CYS A 88 ZN ZN A 301 1555 1555 2.44 LINK SG CYS A 96 ZN ZN A 301 1555 1555 2.41 LINK SG CYS A 106 ZN ZN A 301 1555 1555 2.25 LINK NE2 HIS A 110 ZN ZN A 301 1555 1555 1.89 LINK SG CYS A 150 ZN ZN A 303 1555 1555 2.34 LINK SG CYS A 162 ZN ZN A 303 1555 1555 2.78 LINK SG CYS A 168 ZN ZN A 303 1555 1555 2.13 LINK NE2 HIS A 172 ZN ZN A 303 1555 1555 2.01 LINK SG CYS A 174 ZN ZN A 304 1555 1555 2.28 LINK SG CYS A 182 ZN ZN A 304 1555 1555 2.28 LINK SG CYS A 187 ZN ZN A 304 1555 1555 2.45 LINK NE2 HIS A 191 ZN ZN A 304 1555 1555 2.02 CISPEP 1 ARG A 80 PRO A 81 0 8.94 SITE 1 AC1 4 CYS A 88 CYS A 96 CYS A 106 HIS A 110 SITE 1 AC2 4 CYS A 73 CYS A 78 CYS A 82 HIS A 86 SITE 1 AC3 4 CYS A 150 CYS A 162 CYS A 168 HIS A 172 SITE 1 AC4 4 CYS A 174 CYS A 182 CYS A 187 HIS A 191 CRYST1 34.450 80.548 84.172 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029028 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011880 0.00000