HEADER OXIDOREDUCTASE 01-OCT-19 6L1X TITLE QUINOL-DEPENDENT NITRIC OXIDE REDUCTASE (QNOR) FROM NEISSERIA TITLE 2 MENINGITIDIS IN THE MONOMERIC OXIDIZED STATE WITH ZINC COMPLEX. COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRIC-OXIDE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.7.99.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS (STRAIN ALPHA14); SOURCE 3 ORGANISM_TAXID: 662598; SOURCE 4 STRAIN: ALPHA14; SOURCE 5 GENE: NORB, NMO_1451; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REDUCTASE, MEMBRANE-BOUND, NITRIC OXIDE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.M.A.JAMALI,S.V.ANTONYUK,T.TOSHA,K.MURAMOTO,S.S.HASNAIN,Y.SHIRO REVDAT 3 27-MAR-24 6L1X 1 REMARK REVDAT 2 03-JUN-20 6L1X 1 JRNL REVDAT 1 01-APR-20 6L1X 0 JRNL AUTH M.A.M.JAMALI,C.C.GOPALASINGAM,R.M.JOHNSON,T.TOSHA, JRNL AUTH 2 K.MURAMOTO,S.P.MUENCH,S.V.ANTONYUK,Y.SHIRO,S.S.HASNAIN JRNL TITL THE ACTIVE FORM OF QUINOL-DEPENDENT NITRIC OXIDE REDUCTASE JRNL TITL 2 FROMNEISSERIA MENINGITIDISIS A DIMER. JRNL REF IUCRJ V. 7 404 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 32431824 JRNL DOI 10.1107/S2052252520003656 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.5 REMARK 3 NUMBER OF REFLECTIONS : 19034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.303 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1063 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1401 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.4400 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.4550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 100.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.94000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : 5.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.566 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.498 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.933 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5866 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8006 ; 0.999 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 703 ; 6.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;35.285 ;21.962 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 832 ;19.755 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.511 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 721 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4493 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2828 ; 4.881 ;10.150 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3525 ; 8.120 ;15.208 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3038 ; 5.069 ;10.242 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9656 ;13.719 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SF FILE CONTAINS FRIEDEL PAIRS UNDER REMARK 3 I/F_MINUS AND I/F_PLUS COLUMNS. REMARK 4 REMARK 4 6L1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300013992. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19034 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 49.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES PH8 26% PEG 600 (V/V) 0.5 REMARK 280 MM ZINC SULPHATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.06000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.77500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.34000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.77500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.34000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 251 REMARK 465 SER A 252 REMARK 465 GLU A 258 REMARK 465 GLU A 259 REMARK 465 VAL A 260 REMARK 465 GLU A 261 REMARK 465 VAL A 262 REMARK 465 PRO A 263 REMARK 465 THR A 264 REMARK 465 GLU A 265 REMARK 465 ASP A 266 REMARK 465 PRO A 267 REMARK 465 ILE A 268 REMARK 465 SER A 269 REMARK 465 LYS A 270 REMARK 465 VAL A 271 REMARK 465 GLN A 272 REMARK 465 GLU A 307 REMARK 465 GLY A 308 REMARK 465 GLN A 309 REMARK 465 GLY A 310 REMARK 465 PHE A 311 REMARK 465 TYR A 312 REMARK 465 GLY A 313 REMARK 465 ILE A 314 REMARK 465 ASP A 315 REMARK 465 GLU A 316 REMARK 465 ALA A 317 REMARK 465 LEU A 318 REMARK 465 GLY A 319 REMARK 465 PHE A 320 REMARK 465 GLU A 321 REMARK 465 MET A 322 REMARK 465 GLU A 585 REMARK 465 TRP A 586 REMARK 465 ALA A 587 REMARK 465 LYS A 588 REMARK 465 ARG A 589 REMARK 465 LEU A 590 REMARK 465 ARG A 749 REMARK 465 ASP A 750 REMARK 465 LYS A 751 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 MET A 25 CG SD CE REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 51 CG CD CE NZ REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 ILE A 133 CG1 CG2 CD1 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 ASP A 206 CG OD1 OD2 REMARK 470 VAL A 224 CG1 CG2 REMARK 470 LEU A 247 CG CD1 CD2 REMARK 470 PHE A 253 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 449 CG CD CE NZ REMARK 470 TYR A 580 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 655 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 332 O1A HEM A 801 1.41 REMARK 500 O LEU A 22 OH TYR A 483 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 32 59.51 -104.14 REMARK 500 PRO A 34 107.23 -55.05 REMARK 500 SER A 42 58.46 -106.31 REMARK 500 ALA A 43 -60.70 56.05 REMARK 500 LYS A 46 94.17 -47.22 REMARK 500 ALA A 50 -146.65 -104.94 REMARK 500 VAL A 69 -65.55 -96.51 REMARK 500 LYS A 107 42.22 -89.32 REMARK 500 PHE A 108 -29.87 70.58 REMARK 500 GLU A 135 -8.37 74.82 REMARK 500 ASP A 136 60.03 -160.93 REMARK 500 ASP A 163 116.68 -36.92 REMARK 500 ASN A 178 68.38 63.37 REMARK 500 THR A 226 -178.79 -59.11 REMARK 500 LYS A 365 -137.26 -129.46 REMARK 500 PRO A 399 38.01 -66.10 REMARK 500 TYR A 412 -8.03 84.39 REMARK 500 LYS A 449 55.02 -103.39 REMARK 500 LYS A 475 49.75 -94.23 REMARK 500 HIS A 490 -60.61 -129.03 REMARK 500 SER A 518 35.10 -77.20 REMARK 500 THR A 519 -58.11 -133.27 REMARK 500 THR A 539 -38.06 -24.79 REMARK 500 SER A 546 42.35 -88.21 REMARK 500 SER A 550 -5.95 -56.80 REMARK 500 GLU A 563 9.95 -60.81 REMARK 500 HIS A 577 5.20 -67.20 REMARK 500 TRP A 578 -78.45 -97.79 REMARK 500 SER A 579 72.99 -64.09 REMARK 500 HIS A 582 -51.97 -153.85 REMARK 500 ASN A 628 1.85 -62.75 REMARK 500 VAL A 641 -71.23 -94.79 REMARK 500 ASN A 660 -1.39 52.47 REMARK 500 SER A 686 -69.35 -161.14 REMARK 500 TRP A 704 -28.61 -38.08 REMARK 500 GLN A 713 76.93 -67.06 REMARK 500 PHE A 747 79.31 -105.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 804 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 76 O REMARK 620 2 TYR A 78 OH 100.6 REMARK 620 3 GLU A 411 OE1 88.1 170.5 REMARK 620 4 GLU A 411 OE2 77.9 135.5 49.9 REMARK 620 5 HEM A 801 O1D 104.0 76.3 105.4 61.5 REMARK 620 6 HEM A 802 O1A 162.9 93.8 78.2 85.4 70.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 806 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 172 NE2 REMARK 620 2 GLN A 713 OE1 73.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 805 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 257 ND1 REMARK 620 2 GLU A 573 OE1 98.2 REMARK 620 3 GLU A 576 OE1 66.3 73.4 REMARK 620 4 HIS A 577 NE2 166.8 92.8 124.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 335 NE2 REMARK 620 2 HEM A 801 NA 91.8 REMARK 620 3 HEM A 801 NB 83.8 87.6 REMARK 620 4 HEM A 801 NC 90.0 173.3 86.2 REMARK 620 5 HEM A 801 ND 97.8 95.1 176.8 91.1 REMARK 620 6 HIS A 635 NE2 168.2 90.0 84.7 86.9 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 803 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 490 ND1 REMARK 620 2 HIS A 541 NE2 113.0 REMARK 620 3 HIS A 542 NE2 100.6 96.0 REMARK 620 4 HOH A 901 O 107.5 114.2 124.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 807 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 494 OE1 REMARK 620 2 GLU A 494 OE2 63.8 REMARK 620 3 GLU A 498 OE1 104.0 73.1 REMARK 620 4 GLU A 498 OE2 92.1 122.9 63.6 REMARK 620 5 GLU A 563 OE1 129.7 80.0 96.9 138.0 REMARK 620 6 GLU A 563 OE2 101.7 116.7 154.1 118.6 63.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 633 NE2 REMARK 620 2 HEM A 802 NA 91.6 REMARK 620 3 HEM A 802 NB 93.4 87.2 REMARK 620 4 HEM A 802 NC 90.2 173.0 85.9 REMARK 620 5 HEM A 802 ND 86.5 92.9 179.9 94.0 REMARK 620 6 HOH A 901 O 166.2 100.8 81.4 76.7 98.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 807 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6FWF RELATED DB: PDB DBREF 6L1X A 1 751 UNP C6S880 C6S880_NEIML 1 751 SEQRES 1 A 751 MET GLY GLN TYR LYS LYS LEU TRP TYR LEU LEU PHE ALA SEQRES 2 A 751 VAL LEU ALA VAL CYS PHE THR ILE LEU GLY TYR MET GLY SEQRES 3 A 751 SER GLU VAL TYR LYS LYS ALA PRO PRO TYR PRO GLU GLN SEQRES 4 A 751 VAL VAL SER ALA SER GLY LYS VAL LEU MET ALA LYS ASP SEQRES 5 A 751 ASP ILE LEU ALA GLY GLN SER ALA TRP GLN THR THR GLY SEQRES 6 A 751 GLY MET GLU VAL GLY SER VAL LEU GLY HIS GLY ALA TYR SEQRES 7 A 751 GLN ALA PRO ASP TRP THR ALA ASP TRP LEU HIS ARG GLU SEQRES 8 A 751 LEU SER ALA TRP LEU ASP LEU THR ALA GLN GLN THR TYR SEQRES 9 A 751 GLY LYS LYS PHE ASP GLU VAL SER PRO GLU GLU GLN ALA SEQRES 10 A 751 VAL LEU LYS THR ARG LEU ALA ASP GLU TYR ARG ASN GLN SEQRES 11 A 751 SER ARG ILE LYS GLU ASP GLY SER VAL VAL ILE SER ASP SEQRES 12 A 751 THR ARG VAL LYS ALA ILE GLU SER ILE LEU PRO TYR TYR SEQRES 13 A 751 HIS GLY VAL TYR GLY ASP ASP PRO ALA LEU GLN THR THR SEQRES 14 A 751 ARG GLU HIS PHE ALA MET LYS ASN ASN THR LEU PRO SER SEQRES 15 A 751 GLN GLU ALA ARG GLU LYS LEU PHE ASP PHE PHE PHE TRP SEQRES 16 A 751 THR SER TRP SER ALA SER THR ASN ARG PRO ASP GLU THR SEQRES 17 A 751 PHE THR TYR THR ASN ASN TRP PRO HIS GLU PRO LEU ILE SEQRES 18 A 751 ASN ASN VAL PRO THR THR GLU ASN TYR MET TRP SER PHE SEQRES 19 A 751 THR SER VAL VAL LEU LEU LEU MET GLY ILE GLY LEU LEU SEQRES 20 A 751 MET TRP GLY TYR SER PHE LEU THR LYS HIS GLU GLU VAL SEQRES 21 A 751 GLU VAL PRO THR GLU ASP PRO ILE SER LYS VAL GLN LEU SEQRES 22 A 751 THR PRO SER GLN LYS ALA LEU GLY LYS TYR VAL PHE LEU SEQRES 23 A 751 THR VAL ALA LEU PHE VAL VAL GLN VAL LEU LEU GLY GLY SEQRES 24 A 751 LEU THR ALA HIS TYR THR VAL GLU GLY GLN GLY PHE TYR SEQRES 25 A 751 GLY ILE ASP GLU ALA LEU GLY PHE GLU MET SER ASP TRP SEQRES 26 A 751 PHE PRO TYR ALA LEU THR ARG THR TRP HIS ILE GLN SER SEQRES 27 A 751 ALA ILE PHE TRP ILE ALA THR GLY PHE LEU THR ALA GLY SEQRES 28 A 751 LEU PHE LEU ALA PRO ILE VAL ASN GLY GLY LYS ASP PRO SEQRES 29 A 751 LYS PHE GLN ARG ALA GLY VAL ASN PHE LEU TYR ILE ALA SEQRES 30 A 751 LEU PHE ILE VAL VAL GLY GLY SER TYR ALA GLY ASN PHE SEQRES 31 A 751 PHE ALA LEU THR HIS ILE LEU PRO PRO GLU PHE ASN PHE SEQRES 32 A 751 TRP PHE GLY HIS GLN GLY TYR GLU TYR LEU ASP LEU GLY SEQRES 33 A 751 ARG PHE TRP GLN LEU LEU LEU MET VAL GLY LEU LEU LEU SEQRES 34 A 751 TRP LEU PHE LEU MET LEU ARG CYS THR VAL SER ALA PHE SEQRES 35 A 751 LYS GLU LYS GLY VAL ASP LYS ASN LEU LEU ALA ILE PHE SEQRES 36 A 751 VAL ALA SER MET VAL GLY VAL GLY VAL PHE TYR ALA PRO SEQRES 37 A 751 GLY LEU PHE TYR GLY GLU LYS SER PRO ILE ALA VAL MET SEQRES 38 A 751 GLU TYR TRP ARG TRP TRP VAL VAL HIS LEU TRP VAL GLU SEQRES 39 A 751 GLY PHE PHE GLU VAL PHE ALA THR ALA ALA PHE ALA PHE SEQRES 40 A 751 VAL PHE TYR ASN MET GLY PHE VAL ARG ARG SER THR ALA SEQRES 41 A 751 THR ALA SER THR LEU ALA ALA ALA ALA ILE PHE MET LEU SEQRES 42 A 751 GLY GLY VAL PRO GLY THR LEU HIS HIS LEU TYR PHE SER SEQRES 43 A 751 GLY SER THR SER ALA SER MET ALA ILE GLY ALA CYS PHE SEQRES 44 A 751 SER ALA LEU GLU VAL VAL PRO LEU VAL LEU LEU GLY ARG SEQRES 45 A 751 GLU ALA TYR GLU HIS TRP SER TYR GLN HIS LEU SER GLU SEQRES 46 A 751 TRP ALA LYS ARG LEU ARG TRP PRO LEU MET CYS PHE VAL SEQRES 47 A 751 ALA VAL ALA PHE TRP ASN MET ILE GLY ALA GLY VAL PHE SEQRES 48 A 751 GLY PHE LEU ILE ASN PRO PRO ILE SER LEU PHE TYR ILE SEQRES 49 A 751 GLN GLY LEU ASN THR SER ALA VAL HIS ALA HIS ALA ALA SEQRES 50 A 751 LEU PHE GLY VAL TYR GLY PHE LEU ALA LEU GLY PHE VAL SEQRES 51 A 751 LEU LEU VAL ALA ARG TYR LEU LYS PRO ASN VAL GLN PHE SEQRES 52 A 751 ASP ASP LYS LEU MET THR TRP GLY PHE TRP LEU LEU ASN SEQRES 53 A 751 GLY GLY LEU VAL GLY MET ILE ALA ILE SER LEU LEU PRO SEQRES 54 A 751 VAL GLY VAL ILE GLN ALA TYR ALA SER ILE THR HIS GLY SEQRES 55 A 751 LEU TRP TYR ALA ARG SER GLU GLU PHE LEU GLN MET GLU SEQRES 56 A 751 ILE LEU ASP THR LEU ARG TRP VAL ARG THR ALA ALA ASP SEQRES 57 A 751 LEU ILE PHE ILE GLY GLY ALA ILE CYS VAL ALA ILE GLN SEQRES 58 A 751 ALA THR LYS ILE VAL PHE GLY ARG ASP LYS HET HEM A 801 43 HET HEM A 802 43 HET FE A 803 1 HET CA A 804 1 HET ZN A 805 1 HET ZN A 806 1 HET ZN A 807 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM FE FE (III) ION HETNAM CA CALCIUM ION HETNAM ZN ZINC ION HETSYN HEM HEME FORMUL 2 HEM 2(C34 H32 FE N4 O4) FORMUL 4 FE FE 3+ FORMUL 5 CA CA 2+ FORMUL 6 ZN 3(ZN 2+) FORMUL 9 HOH *(H2 O) HELIX 1 AA1 TYR A 4 LYS A 32 1 29 HELIX 2 AA2 LYS A 51 THR A 64 1 14 HELIX 3 AA3 GLY A 65 VAL A 69 5 5 HELIX 4 AA4 ASP A 82 GLY A 105 1 24 HELIX 5 AA5 SER A 112 GLN A 130 1 19 HELIX 6 AA6 SER A 142 GLU A 150 1 9 HELIX 7 AA7 ILE A 152 TYR A 160 1 9 HELIX 8 AA8 LEU A 166 PHE A 173 1 8 HELIX 9 AA9 SER A 182 ALA A 200 1 19 HELIX 10 AB1 THR A 226 MET A 248 1 23 HELIX 11 AB2 THR A 274 LEU A 280 1 7 HELIX 12 AB3 LEU A 280 TYR A 304 1 25 HELIX 13 AB4 PRO A 327 ASN A 359 1 33 HELIX 14 AB5 PHE A 366 LEU A 393 1 28 HELIX 15 AB6 GLY A 416 CYS A 437 1 22 HELIX 16 AB7 ASN A 450 PHE A 465 1 16 HELIX 17 AB8 TYR A 466 PHE A 471 5 6 HELIX 18 AB9 PRO A 477 VAL A 489 1 13 HELIX 19 AC1 GLU A 494 MET A 512 1 19 HELIX 20 AC2 ARG A 516 THR A 539 1 24 HELIX 21 AC3 LEU A 540 LEU A 543 5 4 HELIX 22 AC4 SER A 550 SER A 560 1 11 HELIX 23 AC5 GLU A 563 HIS A 577 1 15 HELIX 24 AC6 TRP A 592 GLY A 607 1 16 HELIX 25 AC7 GLY A 609 LEU A 614 1 6 HELIX 26 AC8 PRO A 617 GLN A 625 1 9 HELIX 27 AC9 LEU A 627 LYS A 658 1 32 HELIX 28 AD1 ASP A 664 ILE A 685 1 22 HELIX 29 AD2 SER A 686 GLY A 702 1 17 HELIX 30 AD3 GLY A 702 ARG A 707 1 6 HELIX 31 AD4 SER A 708 GLN A 713 1 6 HELIX 32 AD5 ILE A 716 PHE A 747 1 32 SHEET 1 AA1 2 VAL A 40 VAL A 41 0 SHEET 2 AA1 2 VAL A 139 VAL A 140 1 O VAL A 139 N VAL A 41 LINK O GLY A 76 CA CA A 804 1555 1555 2.34 LINK OH TYR A 78 CA CA A 804 1555 1555 2.35 LINK NE2 HIS A 172 ZN ZN A 806 1555 1555 2.14 LINK ND1 HIS A 257 ZN ZN A 805 1555 1555 2.18 LINK NE2 HIS A 335 FE HEM A 801 1555 1555 1.89 LINK OE1 GLU A 411 CA CA A 804 1555 1555 2.33 LINK OE2 GLU A 411 CA CA A 804 1555 1555 2.81 LINK ND1 HIS A 490 FE FE A 803 1555 1555 1.89 LINK OE1 GLU A 494 ZN ZN A 807 1555 1555 2.08 LINK OE2 GLU A 494 ZN ZN A 807 1555 1555 2.07 LINK OE1 GLU A 498 ZN ZN A 807 1555 1555 2.08 LINK OE2 GLU A 498 ZN ZN A 807 1555 1555 2.07 LINK NE2 HIS A 541 FE FE A 803 1555 1555 1.88 LINK NE2 HIS A 542 FE FE A 803 1555 1555 1.90 LINK OE1 GLU A 563 ZN ZN A 807 1555 1555 2.07 LINK OE2 GLU A 563 ZN ZN A 807 1555 1555 2.08 LINK OE1 GLU A 573 ZN ZN A 805 1555 1555 2.08 LINK OE1 GLU A 576 ZN ZN A 805 1555 1555 2.06 LINK NE2 HIS A 577 ZN ZN A 805 1555 1555 2.03 LINK NE2 HIS A 633 FE HEM A 802 1555 1555 1.88 LINK NE2 HIS A 635 FE HEM A 801 1555 1555 1.87 LINK OE1 GLN A 713 ZN ZN A 806 1555 1555 2.10 LINK O1D HEM A 801 CA CA A 804 1555 1555 2.34 LINK O1A HEM A 802 CA CA A 804 1555 1555 2.33 LINK FE HEM A 802 O HOH A 901 1555 1555 2.05 LINK FE FE A 803 O HOH A 901 1555 1555 2.04 CISPEP 1 TRP A 215 PRO A 216 0 1.28 SITE 1 AC1 22 GLY A 76 ALA A 77 TYR A 78 GLN A 79 SITE 2 AC1 22 GLN A 294 GLY A 298 GLY A 299 ALA A 302 SITE 3 AC1 22 TYR A 328 ARG A 332 HIS A 335 ILE A 336 SITE 4 AC1 22 ALA A 339 GLU A 411 TYR A 412 HIS A 635 SITE 5 AC1 22 PHE A 639 ARG A 724 ASP A 728 PHE A 731 SITE 6 AC1 22 HEM A 802 CA A 804 SITE 1 AC2 21 TYR A 78 GLU A 411 TYR A 412 TRP A 486 SITE 2 AC2 21 GLU A 494 HIS A 541 HIS A 542 ALA A 608 SITE 3 AC2 21 GLY A 612 PHE A 613 ASN A 616 LEU A 621 SITE 4 AC2 21 GLN A 625 SER A 630 HIS A 633 ALA A 637 SITE 5 AC2 21 LEU A 638 TYR A 642 HEM A 801 CA A 804 SITE 6 AC2 21 HOH A 901 SITE 1 AC3 4 HIS A 490 HIS A 541 HIS A 542 HOH A 901 SITE 1 AC4 5 GLY A 76 TYR A 78 GLU A 411 HEM A 801 SITE 2 AC4 5 HEM A 802 SITE 1 AC5 4 HIS A 257 GLU A 573 GLU A 576 HIS A 577 SITE 1 AC6 2 HIS A 172 GLN A 713 SITE 1 AC7 3 GLU A 494 GLU A 498 GLU A 563 CRYST1 96.120 116.680 123.550 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008570 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008094 0.00000