HEADER HYDROLASE/DNA 05-OCT-19 6L2O TITLE CRYSTAL STRUCTURE OF THE R.PABI(Y68F-K154A)-DSDNA(GTAC-5BP-GTAC) TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: RE_R_PAB1 DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*A*GP*CP*AP*GP*TP*AP*CP*TP*TP*AP*AP*AP*GP*TP*AP*CP*TP*GP*CP*TP*G COMPND 9 )-3'); COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI (STRAIN GE5 / ORSAY); SOURCE 3 ORGANISM_TAXID: 272844; SOURCE 4 STRAIN: GE5 / ORSAY; SOURCE 5 GENE: PAB0105; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS GLYCOSYLASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.MIYAZONO,D.WANG,T.ITO,M.TANOKURA REVDAT 5 22-NOV-23 6L2O 1 REMARK REVDAT 4 27-MAY-20 6L2O 1 JRNL REVDAT 3 15-APR-20 6L2O 1 JRNL REVDAT 2 25-MAR-20 6L2O 1 REMARK REVDAT 1 18-MAR-20 6L2O 0 JRNL AUTH K.I.MIYAZONO,D.WANG,T.ITO,M.TANOKURA JRNL TITL DISTORTION OF DOUBLE-STRANDED DNA STRUCTURE BY THE BINDING JRNL TITL 2 OF THE RESTRICTION DNA GLYCOSYLASE R.PABI. JRNL REF NUCLEIC ACIDS RES. V. 48 5106 2020 JRNL REFN ESSN 1362-4962 JRNL PMID 32232412 JRNL DOI 10.1093/NAR/GKAA184 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2140 - 5.8652 1.00 2721 122 0.1806 0.2118 REMARK 3 2 5.8652 - 4.6574 1.00 2707 154 0.1742 0.2414 REMARK 3 3 4.6574 - 4.0693 1.00 2653 176 0.1656 0.2256 REMARK 3 4 4.0693 - 3.6975 1.00 2704 142 0.2028 0.2105 REMARK 3 5 3.6975 - 3.4326 1.00 2697 164 0.2228 0.2572 REMARK 3 6 3.4326 - 3.2303 1.00 2780 93 0.2241 0.2565 REMARK 3 7 3.2303 - 3.0686 1.00 2684 131 0.2558 0.2772 REMARK 3 8 3.0686 - 2.9351 1.00 2696 168 0.2692 0.3105 REMARK 3 9 2.9351 - 2.8221 1.00 2726 120 0.2734 0.3086 REMARK 3 10 2.8221 - 2.7247 1.00 2720 130 0.2703 0.3030 REMARK 3 11 2.7247 - 2.6395 0.99 2693 130 0.2777 0.3337 REMARK 3 12 2.6395 - 2.5641 1.00 2611 196 0.2940 0.2692 REMARK 3 13 2.5641 - 2.4966 1.00 2717 138 0.2831 0.3827 REMARK 3 14 2.4966 - 2.4357 1.00 2713 126 0.3005 0.3959 REMARK 3 15 2.4357 - 2.3803 1.00 2686 154 0.3078 0.3549 REMARK 3 16 2.3803 - 2.3297 1.00 2718 148 0.3057 0.3582 REMARK 3 17 2.3297 - 2.2831 1.00 2719 109 0.3325 0.3594 REMARK 3 18 2.2831 - 2.2400 1.00 2746 142 0.3384 0.4173 REMARK 3 19 2.2400 - 2.2000 0.99 2634 134 0.3674 0.3680 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4018 REMARK 3 ANGLE : 0.623 5507 REMARK 3 CHIRALITY : 0.046 615 REMARK 3 PLANARITY : 0.003 629 REMARK 3 DIHEDRAL : 10.256 2382 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0872 -20.3744 -38.0982 REMARK 3 T TENSOR REMARK 3 T11: 0.6508 T22: 0.5044 REMARK 3 T33: 0.4117 T12: 0.0370 REMARK 3 T13: 0.0223 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 5.2487 L22: 5.9963 REMARK 3 L33: 7.9502 L12: -4.2828 REMARK 3 L13: -3.9032 L23: 6.8186 REMARK 3 S TENSOR REMARK 3 S11: 0.3987 S12: -0.0346 S13: 0.3505 REMARK 3 S21: -0.5094 S22: -0.1986 S23: -0.3568 REMARK 3 S31: -0.4691 S32: -0.7512 S33: -0.1799 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.4777 -7.6797 -29.6903 REMARK 3 T TENSOR REMARK 3 T11: 0.8405 T22: 0.7692 REMARK 3 T33: 0.5969 T12: -0.0200 REMARK 3 T13: 0.1324 T23: -0.0907 REMARK 3 L TENSOR REMARK 3 L11: 4.7518 L22: 2.2086 REMARK 3 L33: 6.4249 L12: 3.2131 REMARK 3 L13: 0.3894 L23: 0.0440 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: -0.0900 S13: 0.8344 REMARK 3 S21: 0.3944 S22: 0.2339 S23: -0.1162 REMARK 3 S31: -1.2246 S32: 0.8548 S33: -0.3679 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1664 -27.2197 -19.0351 REMARK 3 T TENSOR REMARK 3 T11: 0.4810 T22: 0.5832 REMARK 3 T33: 0.4049 T12: 0.0139 REMARK 3 T13: -0.0413 T23: 0.0439 REMARK 3 L TENSOR REMARK 3 L11: 0.9324 L22: 2.2189 REMARK 3 L33: 5.3235 L12: -0.3026 REMARK 3 L13: -0.7547 L23: 2.3074 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.1056 S13: -0.0620 REMARK 3 S21: 0.2438 S22: -0.0374 S23: -0.0644 REMARK 3 S31: 0.6914 S32: 0.1715 S33: 0.0103 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3241 -24.5099 -27.4090 REMARK 3 T TENSOR REMARK 3 T11: 0.4178 T22: 0.5628 REMARK 3 T33: 0.3199 T12: 0.0373 REMARK 3 T13: -0.0302 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 2.2691 L22: 3.1264 REMARK 3 L33: 3.9301 L12: -0.8728 REMARK 3 L13: 0.2675 L23: 0.1754 REMARK 3 S TENSOR REMARK 3 S11: 0.1059 S12: -0.2566 S13: 0.1124 REMARK 3 S21: -0.1107 S22: -0.0468 S23: 0.0878 REMARK 3 S31: -0.0742 S32: -0.2102 S33: -0.0748 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4748 -5.9975 -8.9560 REMARK 3 T TENSOR REMARK 3 T11: 0.7340 T22: 1.2573 REMARK 3 T33: 0.5797 T12: 0.4478 REMARK 3 T13: -0.2252 T23: -0.0757 REMARK 3 L TENSOR REMARK 3 L11: 4.4815 L22: 8.9331 REMARK 3 L33: 3.2074 L12: -2.3513 REMARK 3 L13: -1.6903 L23: 5.3402 REMARK 3 S TENSOR REMARK 3 S11: 0.1179 S12: 0.3586 S13: 0.3009 REMARK 3 S21: -1.3194 S22: -0.4098 S23: 0.0075 REMARK 3 S31: -1.3618 S32: -1.0672 S33: 0.4547 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4591 -7.6359 -4.3928 REMARK 3 T TENSOR REMARK 3 T11: 0.4479 T22: 0.9811 REMARK 3 T33: 0.4178 T12: 0.1683 REMARK 3 T13: -0.0194 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 3.8711 L22: 6.0591 REMARK 3 L33: 5.9461 L12: 1.3251 REMARK 3 L13: 0.2660 L23: 0.6581 REMARK 3 S TENSOR REMARK 3 S11: -0.0640 S12: 0.2392 S13: 0.1217 REMARK 3 S21: -0.2528 S22: 0.3695 S23: 0.5935 REMARK 3 S31: -0.6595 S32: -1.2157 S33: -0.2340 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5282 -3.9102 -3.3117 REMARK 3 T TENSOR REMARK 3 T11: 0.7238 T22: 0.7096 REMARK 3 T33: 0.4514 T12: -0.2186 REMARK 3 T13: 0.0173 T23: 0.0890 REMARK 3 L TENSOR REMARK 3 L11: 3.0608 L22: 6.6270 REMARK 3 L33: 7.0331 L12: -2.8598 REMARK 3 L13: -2.4002 L23: 3.5361 REMARK 3 S TENSOR REMARK 3 S11: 0.3225 S12: -0.1664 S13: 0.7368 REMARK 3 S21: 0.0810 S22: 0.1992 S23: -0.8922 REMARK 3 S31: -1.2089 S32: 0.6913 S33: -0.5642 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 130 THROUGH 172 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9454 -8.0623 -5.1653 REMARK 3 T TENSOR REMARK 3 T11: 0.6106 T22: 0.4982 REMARK 3 T33: 0.3501 T12: 0.0223 REMARK 3 T13: 0.0023 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 4.5569 L22: 2.2800 REMARK 3 L33: 4.9113 L12: -1.7893 REMARK 3 L13: 1.9497 L23: -0.3017 REMARK 3 S TENSOR REMARK 3 S11: 0.2693 S12: 0.6314 S13: 0.1248 REMARK 3 S21: -0.3634 S22: -0.3841 S23: -0.0998 REMARK 3 S31: -0.7481 S32: -0.3227 S33: 0.0635 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 173 THROUGH 223 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1675 -0.5381 -2.5030 REMARK 3 T TENSOR REMARK 3 T11: 0.7215 T22: 0.8558 REMARK 3 T33: 0.4002 T12: 0.2721 REMARK 3 T13: 0.0464 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 2.6388 L22: 5.4080 REMARK 3 L33: 4.9533 L12: 0.4872 REMARK 3 L13: 0.7079 L23: 1.4147 REMARK 3 S TENSOR REMARK 3 S11: 0.3169 S12: 0.0831 S13: 0.2877 REMARK 3 S21: -0.0290 S22: -0.2753 S23: 0.5307 REMARK 3 S31: -1.1075 S32: -1.2150 S33: 0.0468 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID -9 THROUGH -5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5406 -6.6259 -33.5926 REMARK 3 T TENSOR REMARK 3 T11: 1.2896 T22: 1.3953 REMARK 3 T33: 1.3868 T12: 0.2203 REMARK 3 T13: -0.0855 T23: 0.2942 REMARK 3 L TENSOR REMARK 3 L11: 3.0062 L22: 3.1107 REMARK 3 L33: 9.8957 L12: -3.0464 REMARK 3 L13: -3.3362 L23: 3.8075 REMARK 3 S TENSOR REMARK 3 S11: 1.7385 S12: 0.8470 S13: -1.6176 REMARK 3 S21: 0.8798 S22: -1.6717 S23: 2.4400 REMARK 3 S31: -0.5706 S32: -0.5321 S33: 0.2415 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID -4 THROUGH 0 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7455 -19.6372 -21.0845 REMARK 3 T TENSOR REMARK 3 T11: 0.6505 T22: 0.9348 REMARK 3 T33: 0.8829 T12: -0.0777 REMARK 3 T13: -0.0377 T23: 0.1760 REMARK 3 L TENSOR REMARK 3 L11: 3.4650 L22: 6.6716 REMARK 3 L33: 6.6194 L12: 1.9557 REMARK 3 L13: -3.6969 L23: -5.1053 REMARK 3 S TENSOR REMARK 3 S11: -1.8708 S12: 0.4597 S13: -1.0616 REMARK 3 S21: -1.3459 S22: 1.0414 S23: -0.3095 REMARK 3 S31: 1.4678 S32: -1.2659 S33: 0.5964 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1337 -20.3478 -24.1361 REMARK 3 T TENSOR REMARK 3 T11: 0.8966 T22: 1.1975 REMARK 3 T33: 0.8722 T12: -0.0702 REMARK 3 T13: -0.2448 T23: 0.2133 REMARK 3 L TENSOR REMARK 3 L11: 7.4794 L22: 2.2814 REMARK 3 L33: 6.0514 L12: 0.4925 REMARK 3 L13: 0.2084 L23: -0.5770 REMARK 3 S TENSOR REMARK 3 S11: -1.1410 S12: -1.9313 S13: -0.3497 REMARK 3 S21: -0.0991 S22: 0.3779 S23: -0.0095 REMARK 3 S31: -0.9100 S32: -1.1360 S33: 0.9172 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8120 -25.7670 -12.5079 REMARK 3 T TENSOR REMARK 3 T11: 1.3280 T22: 1.7288 REMARK 3 T33: 0.9840 T12: 0.3023 REMARK 3 T13: 0.0919 T23: 0.1039 REMARK 3 L TENSOR REMARK 3 L11: 1.9223 L22: 4.2932 REMARK 3 L33: 4.4398 L12: 2.8473 REMARK 3 L13: -2.3735 L23: -3.1302 REMARK 3 S TENSOR REMARK 3 S11: 1.0210 S12: 0.7439 S13: 1.0000 REMARK 3 S21: 1.8405 S22: -0.0984 S23: 0.9188 REMARK 3 S31: -1.5938 S32: -2.6759 S33: -0.5909 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6L2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300014060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28711 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 46.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.85200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5IFF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.3, 51% MPD, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.56333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.78167 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.78167 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.56333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -83.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -46.78167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 224 REMARK 465 THR A 225 REMARK 465 SER A 226 REMARK 465 SER B 12 REMARK 465 PHE B 13 REMARK 465 GLU B 14 REMARK 465 ASN B 15 REMARK 465 GLY B 16 REMARK 465 GLY B 224 REMARK 465 THR B 225 REMARK 465 SER B 226 REMARK 465 DC C -11 REMARK 465 DA C -10 REMARK 465 DG C 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DG C -9 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 71.05 -100.94 REMARK 500 ASP A 54 -158.73 -167.84 REMARK 500 TYR A 74 58.25 -107.78 REMARK 500 GLU A 77 -107.67 48.56 REMARK 500 ASP B 54 -154.68 -87.20 REMARK 500 GLU B 77 -109.94 54.04 REMARK 500 ARG B 156 -23.06 73.78 REMARK 500 REMARK 500 REMARK: NULL DBREF 6L2O A 8 226 UNP Q9V2B6 Q9V2B6_PYRAB 8 226 DBREF 6L2O B 8 226 UNP Q9V2B6 Q9V2B6_PYRAB 8 226 DBREF 6L2O C -11 11 PDB 6L2O 6L2O -11 11 SEQADV 6L2O MET A 7 UNP Q9V2B6 INITIATING METHIONINE SEQADV 6L2O PHE A 68 UNP Q9V2B6 TYR 68 ENGINEERED MUTATION SEQADV 6L2O ALA A 154 UNP Q9V2B6 LYS 154 ENGINEERED MUTATION SEQADV 6L2O MET B 7 UNP Q9V2B6 INITIATING METHIONINE SEQADV 6L2O PHE B 68 UNP Q9V2B6 TYR 68 ENGINEERED MUTATION SEQADV 6L2O ALA B 154 UNP Q9V2B6 LYS 154 ENGINEERED MUTATION SEQRES 1 A 220 MET GLU ALA SER VAL SER PHE GLU ASN GLY LYS ILE VAL SEQRES 2 A 220 VAL ARG LEU PRO ILE THR ARG PRO THR SER LYS ILE ARG SEQRES 3 A 220 VAL LYS LYS ILE GLU ASN GLY VAL GLY ILE PRO VAL SER SEQRES 4 A 220 THR ARG LYS LYS SER PHE PRO SER ASP GLU ASN LEU ARG SEQRES 5 A 220 ASP TYR TYR ILE GLU TRP GLN ILE SER PHE ALA ARG ASP SEQRES 6 A 220 GLY LYS TYR ASP TYR GLU LEU SER ARG MET VAL ARG LEU SEQRES 7 A 220 ALA HIS GLU HIS GLY ILE LEU THR TYR ASN ASP ILE TYR SEQRES 8 A 220 GLU LEU LEU LYS PHE ALA ASP ASP VAL LYS SER TYR LEU SEQRES 9 A 220 GLU ASP LYS GLY ILE ARG ARG GLU SER THR ASN GLU GLU SEQRES 10 A 220 LEU TYR GLY PHE ASN ILE TYR GLU ASP VAL TYR PRO VAL SEQRES 11 A 220 ALA LYS LYS GLU LEU PRO SER GLY GLU PHE ILE GLY ILE SEQRES 12 A 220 VAL LEU LYS HIS ALA GLN ARG ALA VAL GLY TYR GLN SER SEQRES 13 A 220 MET VAL TYR VAL CYS ILE PRO LEU THR ASN VAL GLU PRO SEQRES 14 A 220 SER LEU ALA GLY ARG VAL ALA ARG ARG ASN GLU VAL VAL SEQRES 15 A 220 LYS TYR GLU VAL PRO VAL ASP LEU MET LYS GLU LEU LEU SEQRES 16 A 220 LYS ALA PHE ILE ILE ALA SER GLU THR HIS LYS ASN ASP SEQRES 17 A 220 ILE VAL LYS PHE LEU ARG SER ILE ILE GLY THR SER SEQRES 1 B 220 MET GLU ALA SER VAL SER PHE GLU ASN GLY LYS ILE VAL SEQRES 2 B 220 VAL ARG LEU PRO ILE THR ARG PRO THR SER LYS ILE ARG SEQRES 3 B 220 VAL LYS LYS ILE GLU ASN GLY VAL GLY ILE PRO VAL SER SEQRES 4 B 220 THR ARG LYS LYS SER PHE PRO SER ASP GLU ASN LEU ARG SEQRES 5 B 220 ASP TYR TYR ILE GLU TRP GLN ILE SER PHE ALA ARG ASP SEQRES 6 B 220 GLY LYS TYR ASP TYR GLU LEU SER ARG MET VAL ARG LEU SEQRES 7 B 220 ALA HIS GLU HIS GLY ILE LEU THR TYR ASN ASP ILE TYR SEQRES 8 B 220 GLU LEU LEU LYS PHE ALA ASP ASP VAL LYS SER TYR LEU SEQRES 9 B 220 GLU ASP LYS GLY ILE ARG ARG GLU SER THR ASN GLU GLU SEQRES 10 B 220 LEU TYR GLY PHE ASN ILE TYR GLU ASP VAL TYR PRO VAL SEQRES 11 B 220 ALA LYS LYS GLU LEU PRO SER GLY GLU PHE ILE GLY ILE SEQRES 12 B 220 VAL LEU LYS HIS ALA GLN ARG ALA VAL GLY TYR GLN SER SEQRES 13 B 220 MET VAL TYR VAL CYS ILE PRO LEU THR ASN VAL GLU PRO SEQRES 14 B 220 SER LEU ALA GLY ARG VAL ALA ARG ARG ASN GLU VAL VAL SEQRES 15 B 220 LYS TYR GLU VAL PRO VAL ASP LEU MET LYS GLU LEU LEU SEQRES 16 B 220 LYS ALA PHE ILE ILE ALA SER GLU THR HIS LYS ASN ASP SEQRES 17 B 220 ILE VAL LYS PHE LEU ARG SER ILE ILE GLY THR SER SEQRES 1 C 23 DC DA DG DC DA DG DT DA DC DT DT DA DA SEQRES 2 C 23 DA DG DT DA DC DT DG DC DT DG HELIX 1 AA1 ASP A 54 ARG A 58 5 5 HELIX 2 AA2 GLU A 77 HIS A 88 1 12 HELIX 3 AA3 THR A 92 VAL A 106 1 15 HELIX 4 AA4 TYR A 109 GLY A 114 5 6 HELIX 5 AA5 THR A 171 VAL A 173 5 3 HELIX 6 AA6 PRO A 193 SER A 208 1 16 HELIX 7 AA7 SER A 208 ILE A 222 1 15 HELIX 8 AA8 ASP B 54 ARG B 58 5 5 HELIX 9 AA9 GLU B 77 HIS B 88 1 12 HELIX 10 AB1 THR B 92 VAL B 106 1 15 HELIX 11 AB2 TYR B 109 GLY B 114 1 6 HELIX 12 AB3 THR B 171 VAL B 173 5 3 HELIX 13 AB4 PRO B 193 SER B 208 1 16 HELIX 14 AB5 SER B 208 ILE B 223 1 16 SHEET 1 AA1 3 SER A 10 GLU A 14 0 SHEET 2 AA1 3 LYS A 17 PRO A 23 -1 O VAL A 19 N SER A 12 SHEET 3 AA1 3 VAL A 187 VAL A 192 -1 O VAL A 192 N ILE A 18 SHEET 1 AA212 VAL A 40 PRO A 43 0 SHEET 2 AA212 ILE A 31 GLU A 37 -1 N LYS A 35 O ILE A 42 SHEET 3 AA212 TYR A 60 ILE A 66 -1 O TYR A 61 N LYS A 34 SHEET 4 AA212 TYR A 160 PRO A 169 -1 O ILE A 168 N ILE A 62 SHEET 5 AA212 PHE A 146 HIS A 153 -1 N GLY A 148 O TYR A 165 SHEET 6 AA212 PHE A 127 GLU A 140 -1 N ALA A 137 O ILE A 149 SHEET 7 AA212 ASN B 128 GLU B 140 -1 O ASP B 132 N TYR A 134 SHEET 8 AA212 PHE B 146 HIS B 153 -1 O ILE B 147 N LYS B 139 SHEET 9 AA212 TYR B 160 PRO B 169 -1 O TYR B 165 N GLY B 148 SHEET 10 AA212 TYR B 60 ILE B 66 -1 N ILE B 62 O ILE B 168 SHEET 11 AA212 ILE B 31 GLU B 37 -1 N LYS B 34 O TYR B 61 SHEET 12 AA212 VAL B 40 PRO B 43 -1 O VAL B 40 N GLU B 37 SHEET 1 AA3 4 ARG A 116 LEU A 124 0 SHEET 2 AA3 4 PHE A 127 GLU A 140 -1 O GLU A 131 N GLU A 118 SHEET 3 AA3 4 ASN B 128 GLU B 140 -1 O ASP B 132 N TYR A 134 SHEET 4 AA3 4 ARG B 116 GLU B 123 -1 N ARG B 116 O VAL B 133 SHEET 1 AA4 2 VAL B 19 PRO B 23 0 SHEET 2 AA4 2 VAL B 187 GLU B 191 -1 O TYR B 190 N VAL B 20 CISPEP 1 GLU A 174 PRO A 175 0 2.31 CISPEP 2 GLU B 174 PRO B 175 0 -1.75 CRYST1 82.429 82.429 140.345 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012132 0.007004 0.000000 0.00000 SCALE2 0.000000 0.014008 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007125 0.00000