HEADER LIGASE 05-OCT-19 6L2P TITLE THREONYL-TRNA SYNTHETASE FROM SALMONELLA ENTERICA IN THE APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THREONINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: THREONYL-TRNA SYNTHETASE,THRRS; COMPND 5 EC: 6.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 CUBANA STR. 76814; SOURCE 4 ORGANISM_TAXID: 1192560; SOURCE 5 GENE: THRS, A628_05061; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRNA SYNTHETASE, DRUG TARGET, HOMODIMER, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.GUO,B.CHEN,H.ZHOU REVDAT 2 22-NOV-23 6L2P 1 REMARK REVDAT 1 15-JAN-20 6L2P 0 JRNL AUTH J.GUO,B.CHEN,Y.YU,B.CHENG,Y.CHENG,Y.JU,Q.GU,J.XU,H.ZHOU JRNL TITL DISCOVERY OF NOVEL TRNA-AMINO ACID DUAL-SITE INHIBITORS JRNL TITL 2 AGAINST THREONYL-TRNA SYNTHETASE BY FRAGMENT-BASED TARGET JRNL TITL 3 HOPPING. JRNL REF EUR.J.MED.CHEM. V. 187 11941 2019 JRNL REFN ISSN 0223-5234 JRNL PMID 31821989 JRNL DOI 10.1016/J.EJMECH.2019.111941 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 37882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2065 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2583 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6479 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 126 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.12000 REMARK 3 B22 (A**2) : -1.17000 REMARK 3 B33 (A**2) : -1.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.396 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.258 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.228 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6622 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 6208 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8935 ; 1.070 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14230 ; 0.875 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 799 ; 5.488 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 347 ;32.534 ;23.487 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1165 ;14.005 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 62 ;14.975 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 942 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7557 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1629 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 242 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): -0.8590 1.7290 10.8060 REMARK 3 T TENSOR REMARK 3 T11: 0.4680 T22: 0.0387 REMARK 3 T33: 0.0672 T12: 0.0251 REMARK 3 T13: -0.0212 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.1269 L22: 0.4536 REMARK 3 L33: 0.4397 L12: 0.1879 REMARK 3 L13: -0.1236 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0499 S13: 0.0187 REMARK 3 S21: -0.0739 S22: 0.0306 S23: -0.0036 REMARK 3 S31: -0.0536 S32: -0.0595 S33: -0.0421 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 393 A 528 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8540 4.8200 -1.2240 REMARK 3 T TENSOR REMARK 3 T11: 0.4351 T22: 0.0272 REMARK 3 T33: 0.0528 T12: 0.0189 REMARK 3 T13: 0.0375 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.1141 L22: 1.9453 REMARK 3 L33: 1.0384 L12: 1.4328 REMARK 3 L13: 0.4357 L23: 0.2845 REMARK 3 S TENSOR REMARK 3 S11: -0.0470 S12: 0.1128 S13: -0.0189 REMARK 3 S21: -0.1022 S22: 0.1369 S23: -0.0240 REMARK 3 S31: 0.0323 S32: 0.0444 S33: -0.0899 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 529 A 642 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3910 -33.1640 3.6080 REMARK 3 T TENSOR REMARK 3 T11: 0.4175 T22: 0.0209 REMARK 3 T33: 0.0418 T12: -0.0072 REMARK 3 T13: -0.0326 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.7524 L22: 3.4461 REMARK 3 L33: 0.6004 L12: 0.9397 REMARK 3 L13: -0.0844 L23: -0.4049 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: -0.0205 S13: -0.0052 REMARK 3 S21: -0.2668 S22: 0.0614 S23: 0.0598 REMARK 3 S31: 0.1141 S32: 0.0261 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 241 B 392 REMARK 3 ORIGIN FOR THE GROUP (A): -10.0360 -4.8240 24.0150 REMARK 3 T TENSOR REMARK 3 T11: 0.4222 T22: 0.0378 REMARK 3 T33: 0.0843 T12: -0.0016 REMARK 3 T13: 0.0031 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.3573 L22: 0.4126 REMARK 3 L33: 0.8888 L12: 0.3034 REMARK 3 L13: 0.1858 L23: 0.1390 REMARK 3 S TENSOR REMARK 3 S11: 0.0386 S12: 0.0128 S13: 0.0590 REMARK 3 S21: 0.1003 S22: -0.0496 S23: 0.0574 REMARK 3 S31: 0.0144 S32: -0.0884 S33: 0.0110 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 393 B 541 REMARK 3 ORIGIN FOR THE GROUP (A): -14.8280 -14.5570 35.0090 REMARK 3 T TENSOR REMARK 3 T11: 0.4922 T22: 0.0164 REMARK 3 T33: 0.0948 T12: 0.0153 REMARK 3 T13: 0.0581 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.4567 L22: 0.3036 REMARK 3 L33: 0.6664 L12: 0.4603 REMARK 3 L13: -0.0009 L23: 0.0278 REMARK 3 S TENSOR REMARK 3 S11: -0.1250 S12: 0.0240 S13: -0.0018 REMARK 3 S21: 0.1708 S22: 0.0151 S23: 0.0976 REMARK 3 S31: -0.0230 S32: -0.1007 S33: 0.1099 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 542 B 640 REMARK 3 ORIGIN FOR THE GROUP (A): 24.9430 -16.9270 26.4940 REMARK 3 T TENSOR REMARK 3 T11: 0.3443 T22: 0.2324 REMARK 3 T33: 0.1348 T12: 0.0082 REMARK 3 T13: 0.0064 T23: -0.1026 REMARK 3 L TENSOR REMARK 3 L11: 4.4268 L22: 1.3333 REMARK 3 L33: 3.3119 L12: 1.9320 REMARK 3 L13: 1.1494 L23: 0.9373 REMARK 3 S TENSOR REMARK 3 S11: -0.1668 S12: 0.6094 S13: -0.5691 REMARK 3 S21: 0.1762 S22: 0.3590 S23: -0.1456 REMARK 3 S31: -0.0718 S32: 0.8111 S33: -0.1922 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6L2P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-OCT-19. REMARK 100 THE DEPOSITION ID IS D_1300014056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40001 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.0350 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4HWP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.22 M LITHIUM ACETATE PH 7.0, 20% PEG REMARK 280 3350, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.99400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.02350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.92950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.02350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.99400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.92950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 240 REMARK 465 GLY A 241 REMARK 465 LEU A 643 REMARK 465 GLU A 644 REMARK 465 HIS A 645 REMARK 465 HIS A 646 REMARK 465 HIS A 647 REMARK 465 HIS A 648 REMARK 465 HIS A 649 REMARK 465 HIS A 650 REMARK 465 MET B 240 REMARK 465 GLU B 641 REMARK 465 GLU B 642 REMARK 465 LEU B 643 REMARK 465 GLU B 644 REMARK 465 HIS B 645 REMARK 465 HIS B 646 REMARK 465 HIS B 647 REMARK 465 HIS B 648 REMARK 465 HIS B 649 REMARK 465 HIS B 650 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 246 CD CE NZ REMARK 470 LYS A 426 CG CD CE NZ REMARK 470 LYS A 599 CG CD CE NZ REMARK 470 LYS A 614 CG CD CE NZ REMARK 470 GLU A 642 CG CD OE1 OE2 REMARK 470 LYS B 426 CG CD CE NZ REMARK 470 GLU B 432 CG CD OE1 OE2 REMARK 470 GLU B 453 CG CD OE1 OE2 REMARK 470 GLU B 458 CG CD OE1 OE2 REMARK 470 LYS B 505 CG CD CE NZ REMARK 470 GLU B 553 CG CD OE1 OE2 REMARK 470 LYS B 599 CG CD CE NZ REMARK 470 GLU B 602 CG CD OE1 OE2 REMARK 470 LYS B 627 CG CD CE NZ REMARK 470 GLN B 638 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 371 96.99 -165.81 REMARK 500 CYS A 480 -55.62 -132.64 REMARK 500 SER A 488 -57.08 -120.74 REMARK 500 ARG A 589 35.25 70.67 REMARK 500 SER B 322 118.47 -164.13 REMARK 500 CYS B 480 -51.11 -125.44 REMARK 500 SER B 488 -56.95 -128.00 REMARK 500 LEU B 573 40.81 -109.43 REMARK 500 ASN B 575 69.79 -113.63 REMARK 500 LYS B 577 159.28 77.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 334 SG REMARK 620 2 HIS A 385 NE2 99.3 REMARK 620 3 HIS A 511 ND1 102.2 99.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 334 SG REMARK 620 2 HIS B 385 NE2 91.7 REMARK 620 3 HIS B 511 ND1 93.9 90.0 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 701 DBREF 6L2P A 242 642 UNP V7II86 V7II86_SALET 222 622 DBREF 6L2P B 242 642 UNP V7II86 V7II86_SALET 222 622 SEQADV 6L2P MET A 240 UNP V7II86 EXPRESSION TAG SEQADV 6L2P GLY A 241 UNP V7II86 EXPRESSION TAG SEQADV 6L2P LEU A 643 UNP V7II86 EXPRESSION TAG SEQADV 6L2P GLU A 644 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS A 645 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS A 646 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS A 647 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS A 648 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS A 649 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS A 650 UNP V7II86 EXPRESSION TAG SEQADV 6L2P MET B 240 UNP V7II86 EXPRESSION TAG SEQADV 6L2P GLY B 241 UNP V7II86 EXPRESSION TAG SEQADV 6L2P LEU B 643 UNP V7II86 EXPRESSION TAG SEQADV 6L2P GLU B 644 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS B 645 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS B 646 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS B 647 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS B 648 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS B 649 UNP V7II86 EXPRESSION TAG SEQADV 6L2P HIS B 650 UNP V7II86 EXPRESSION TAG SEQRES 1 A 411 MET GLY ARG ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP SEQRES 2 A 411 LEU TYR HIS MET GLN GLU GLU ALA PRO GLY MET VAL PHE SEQRES 3 A 411 TRP HIS ASN ASP GLY TRP THR ILE PHE ARG GLU LEU GLU SEQRES 4 A 411 VAL PHE VAL ARG SER LYS LEU LYS GLU TYR GLN TYR GLN SEQRES 5 A 411 GLU VAL LYS GLY PRO PHE MET MET ASP ARG VAL LEU TRP SEQRES 6 A 411 GLU LYS THR GLY HIS TRP ASP ASN TYR LYS ASP ALA MET SEQRES 7 A 411 PHE THR THR SER SER GLU ASN ARG GLU TYR CYS ILE LYS SEQRES 8 A 411 PRO MET ASN CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN SEQRES 9 A 411 GLY LEU LYS SER TYR ARG ASP LEU PRO LEU ARG MET ALA SEQRES 10 A 411 GLU PHE GLY SER CYS HIS ARG ASN GLU PRO SER GLY ALA SEQRES 11 A 411 LEU HIS GLY LEU MET ARG VAL ARG GLY PHE THR GLN ASP SEQRES 12 A 411 ASP ALA HIS ILE PHE CYS THR GLU GLU GLN ILE ARG ASP SEQRES 13 A 411 GLU VAL ASN ALA CYS ILE ARG MET VAL TYR ASP MET TYR SEQRES 14 A 411 SER THR PHE GLY PHE GLU LYS ILE VAL VAL LYS LEU SER SEQRES 15 A 411 THR ARG PRO ASP LYS ARG ILE GLY SER ASP GLU MET TRP SEQRES 16 A 411 ASP ARG ALA GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU SEQRES 17 A 411 ASN ASN ILE PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA SEQRES 18 A 411 PHE TYR GLY PRO LYS ILE GLU PHE THR LEU TYR ASP CYS SEQRES 19 A 411 LEU ASP ARG ALA TRP GLN CYS GLY THR VAL GLN LEU ASP SEQRES 20 A 411 PHE SER LEU PRO SER ARG LEU SER ALA SER TYR VAL GLY SEQRES 21 A 411 GLU ASP ASN GLU ARG LYS VAL PRO VAL MET ILE HIS ARG SEQRES 22 A 411 ALA ILE LEU GLY SER MET GLU ARG PHE ILE GLY ILE LEU SEQRES 23 A 411 THR GLU GLU PHE ALA GLY PHE PHE PRO THR TRP LEU ALA SEQRES 24 A 411 PRO VAL GLN VAL VAL VAL MET ASN ILE THR ASP SER GLN SEQRES 25 A 411 SER GLU TYR VAL ASN GLU LEU THR GLN LYS LEU GLN ASN SEQRES 26 A 411 ALA GLY ILE ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS SEQRES 27 A 411 ILE GLY PHE LYS ILE ARG GLU HIS THR LEU ARG ARG VAL SEQRES 28 A 411 PRO TYR MET LEU VAL CYS GLY ASP LYS GLU VAL GLU ALA SEQRES 29 A 411 GLY LYS VAL ALA VAL ARG THR ARG ARG GLY LYS ASP LEU SEQRES 30 A 411 GLY SER LEU ASP VAL ASN ASP VAL ILE GLU LYS LEU GLN SEQRES 31 A 411 GLN GLU ILE ARG SER ARG SER LEU GLN GLN LEU GLU GLU SEQRES 32 A 411 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 411 MET GLY ARG ASP HIS ARG LYS ILE GLY LYS GLN LEU ASP SEQRES 2 B 411 LEU TYR HIS MET GLN GLU GLU ALA PRO GLY MET VAL PHE SEQRES 3 B 411 TRP HIS ASN ASP GLY TRP THR ILE PHE ARG GLU LEU GLU SEQRES 4 B 411 VAL PHE VAL ARG SER LYS LEU LYS GLU TYR GLN TYR GLN SEQRES 5 B 411 GLU VAL LYS GLY PRO PHE MET MET ASP ARG VAL LEU TRP SEQRES 6 B 411 GLU LYS THR GLY HIS TRP ASP ASN TYR LYS ASP ALA MET SEQRES 7 B 411 PHE THR THR SER SER GLU ASN ARG GLU TYR CYS ILE LYS SEQRES 8 B 411 PRO MET ASN CYS PRO GLY HIS VAL GLN ILE PHE ASN GLN SEQRES 9 B 411 GLY LEU LYS SER TYR ARG ASP LEU PRO LEU ARG MET ALA SEQRES 10 B 411 GLU PHE GLY SER CYS HIS ARG ASN GLU PRO SER GLY ALA SEQRES 11 B 411 LEU HIS GLY LEU MET ARG VAL ARG GLY PHE THR GLN ASP SEQRES 12 B 411 ASP ALA HIS ILE PHE CYS THR GLU GLU GLN ILE ARG ASP SEQRES 13 B 411 GLU VAL ASN ALA CYS ILE ARG MET VAL TYR ASP MET TYR SEQRES 14 B 411 SER THR PHE GLY PHE GLU LYS ILE VAL VAL LYS LEU SER SEQRES 15 B 411 THR ARG PRO ASP LYS ARG ILE GLY SER ASP GLU MET TRP SEQRES 16 B 411 ASP ARG ALA GLU ALA ASP LEU ALA VAL ALA LEU GLU GLU SEQRES 17 B 411 ASN ASN ILE PRO PHE GLU TYR GLN LEU GLY GLU GLY ALA SEQRES 18 B 411 PHE TYR GLY PRO LYS ILE GLU PHE THR LEU TYR ASP CYS SEQRES 19 B 411 LEU ASP ARG ALA TRP GLN CYS GLY THR VAL GLN LEU ASP SEQRES 20 B 411 PHE SER LEU PRO SER ARG LEU SER ALA SER TYR VAL GLY SEQRES 21 B 411 GLU ASP ASN GLU ARG LYS VAL PRO VAL MET ILE HIS ARG SEQRES 22 B 411 ALA ILE LEU GLY SER MET GLU ARG PHE ILE GLY ILE LEU SEQRES 23 B 411 THR GLU GLU PHE ALA GLY PHE PHE PRO THR TRP LEU ALA SEQRES 24 B 411 PRO VAL GLN VAL VAL VAL MET ASN ILE THR ASP SER GLN SEQRES 25 B 411 SER GLU TYR VAL ASN GLU LEU THR GLN LYS LEU GLN ASN SEQRES 26 B 411 ALA GLY ILE ARG VAL LYS ALA ASP LEU ARG ASN GLU LYS SEQRES 27 B 411 ILE GLY PHE LYS ILE ARG GLU HIS THR LEU ARG ARG VAL SEQRES 28 B 411 PRO TYR MET LEU VAL CYS GLY ASP LYS GLU VAL GLU ALA SEQRES 29 B 411 GLY LYS VAL ALA VAL ARG THR ARG ARG GLY LYS ASP LEU SEQRES 30 B 411 GLY SER LEU ASP VAL ASN ASP VAL ILE GLU LYS LEU GLN SEQRES 31 B 411 GLN GLU ILE ARG SER ARG SER LEU GLN GLN LEU GLU GLU SEQRES 32 B 411 LEU GLU HIS HIS HIS HIS HIS HIS HET ZN A 701 1 HET ZN B 701 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *126(H2 O) HELIX 1 AA1 ASP A 243 LEU A 251 1 9 HELIX 2 AA2 HIS A 267 TYR A 288 1 22 HELIX 3 AA3 ARG A 301 LYS A 306 1 6 HELIX 4 AA4 HIS A 309 LYS A 314 1 6 HELIX 5 AA5 ASN A 333 GLN A 343 1 11 HELIX 6 AA6 SER A 347 LEU A 351 5 5 HELIX 7 AA7 PRO A 366 LEU A 370 5 5 HELIX 8 AA8 GLN A 392 PHE A 411 1 20 HELIX 9 AA9 SER A 430 ASN A 448 1 19 HELIX 10 AB1 SER A 488 LEU A 493 1 6 HELIX 11 AB2 SER A 517 ALA A 530 1 14 HELIX 12 AB3 PRO A 534 ALA A 538 5 5 HELIX 13 AB4 THR A 548 SER A 550 5 3 HELIX 14 AB5 GLN A 551 ALA A 565 1 15 HELIX 15 AB6 LYS A 577 ARG A 588 1 12 HELIX 16 AB7 GLY A 597 GLY A 604 1 8 HELIX 17 AB8 VAL A 621 SER A 634 1 14 HELIX 18 AB9 ASP B 243 LEU B 251 1 9 HELIX 19 AC1 HIS B 267 TYR B 288 1 22 HELIX 20 AC2 ARG B 301 THR B 307 1 7 HELIX 21 AC3 HIS B 309 LYS B 314 1 6 HELIX 22 AC4 ASN B 333 ASN B 342 1 10 HELIX 23 AC5 SER B 347 LEU B 351 5 5 HELIX 24 AC6 PRO B 366 LEU B 370 5 5 HELIX 25 AC7 GLN B 392 PHE B 411 1 20 HELIX 26 AC8 SER B 430 ASN B 448 1 19 HELIX 27 AC9 SER B 488 LEU B 493 1 6 HELIX 28 AD1 MET B 518 ALA B 530 1 13 HELIX 29 AD2 THR B 548 SER B 550 5 3 HELIX 30 AD3 GLN B 551 ALA B 565 1 15 HELIX 31 AD4 LYS B 577 ARG B 588 1 12 HELIX 32 AD5 GLY B 597 GLY B 604 1 8 HELIX 33 AD6 VAL B 621 ARG B 635 1 15 SHEET 1 AA1 2 TYR A 254 HIS A 255 0 SHEET 2 AA1 2 PHE A 265 TRP A 266 -1 O PHE A 265 N HIS A 255 SHEET 1 AA2 8 GLN A 291 GLU A 292 0 SHEET 2 AA2 8 LEU A 353 HIS A 362 1 O ARG A 354 N GLN A 291 SHEET 3 AA2 8 GLY A 378 CYS A 388 -1 O PHE A 379 N CYS A 361 SHEET 4 AA2 8 VAL A 508 ALA A 513 -1 O VAL A 508 N CYS A 388 SHEET 5 AA2 8 ALA A 477 ASP A 486 -1 N GLN A 484 O HIS A 511 SHEET 6 AA2 8 LYS A 465 TYR A 471 -1 N ILE A 466 O VAL A 483 SHEET 7 AA2 8 ILE A 416 SER A 421 -1 N VAL A 417 O THR A 469 SHEET 8 AA2 8 GLU A 453 GLN A 455 1 O GLN A 455 N LEU A 420 SHEET 1 AA3 3 MET A 298 ASP A 300 0 SHEET 2 AA3 3 ARG A 325 ILE A 329 -1 O CYS A 328 N MET A 299 SHEET 3 AA3 3 THR A 319 SER A 322 -1 N THR A 320 O TYR A 327 SHEET 1 AA4 2 TYR A 497 VAL A 498 0 SHEET 2 AA4 2 ARG A 504 LYS A 505 -1 O LYS A 505 N TYR A 497 SHEET 1 AA5 5 VAL A 569 ASP A 572 0 SHEET 2 AA5 5 VAL A 542 ASN A 546 1 N VAL A 544 O ASP A 572 SHEET 3 AA5 5 TYR A 592 CYS A 596 1 O LEU A 594 N MET A 545 SHEET 4 AA5 5 LYS A 605 THR A 610 -1 O ALA A 607 N VAL A 595 SHEET 5 AA5 5 ASP A 615 ASP A 620 -1 O LEU A 616 N VAL A 608 SHEET 1 AA6 2 TYR B 254 HIS B 255 0 SHEET 2 AA6 2 PHE B 265 TRP B 266 -1 O PHE B 265 N HIS B 255 SHEET 1 AA7 8 GLN B 291 GLU B 292 0 SHEET 2 AA7 8 LEU B 353 HIS B 362 1 O ARG B 354 N GLN B 291 SHEET 3 AA7 8 GLY B 378 CYS B 388 -1 O PHE B 379 N CYS B 361 SHEET 4 AA7 8 VAL B 508 SER B 517 -1 O VAL B 508 N CYS B 388 SHEET 5 AA7 8 ALA B 477 ASP B 486 -1 N GLN B 484 O HIS B 511 SHEET 6 AA7 8 LYS B 465 TYR B 471 -1 N LEU B 470 O TRP B 478 SHEET 7 AA7 8 ILE B 416 SER B 421 -1 N VAL B 417 O THR B 469 SHEET 8 AA7 8 GLU B 453 GLN B 455 1 O GLN B 455 N LEU B 420 SHEET 1 AA8 3 MET B 298 ASP B 300 0 SHEET 2 AA8 3 ARG B 325 ILE B 329 -1 O CYS B 328 N MET B 299 SHEET 3 AA8 3 THR B 319 SER B 322 -1 N THR B 320 O TYR B 327 SHEET 1 AA9 2 TYR B 497 VAL B 498 0 SHEET 2 AA9 2 ARG B 504 LYS B 505 -1 O LYS B 505 N TYR B 497 SHEET 1 AB1 5 VAL B 569 ASP B 572 0 SHEET 2 AB1 5 VAL B 542 ASN B 546 1 N VAL B 544 O ASP B 572 SHEET 3 AB1 5 TYR B 592 CYS B 596 1 O LEU B 594 N MET B 545 SHEET 4 AB1 5 LYS B 605 THR B 610 -1 O ALA B 607 N VAL B 595 SHEET 5 AB1 5 ASP B 615 ASP B 620 -1 O LEU B 619 N VAL B 606 LINK SG CYS A 334 ZN ZN A 701 1555 1555 2.20 LINK NE2 HIS A 385 ZN ZN A 701 1555 1555 2.25 LINK ND1 HIS A 511 ZN ZN A 701 1555 1555 2.37 LINK SG CYS B 334 ZN ZN B 701 1555 1555 2.25 LINK NE2 HIS B 385 ZN ZN B 701 1555 1555 2.39 LINK ND1 HIS B 511 ZN ZN B 701 1555 1555 2.55 CISPEP 1 LEU A 351 PRO A 352 0 2.22 CISPEP 2 LEU B 351 PRO B 352 0 3.69 SITE 1 AC1 3 CYS A 334 HIS A 385 HIS A 511 SITE 1 AC2 3 CYS B 334 HIS B 385 HIS B 511 CRYST1 83.988 101.859 106.047 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011906 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009430 0.00000